ID JQ975057; SV 1; linear; genomic RNA; STD; VRL; 7336 BP. XX AC JQ975057; XX DT 30-APR-2013 (Rel. 116, Created) DT 30-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Arabis mosaic virus isolate DU13 segment RNA1, complete sequence. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7336 RA Lopez-Fabuel I., Olmos A., Bassler A., Dupuis L., Torres L.B., RA Bertolini E., Wetzel T.; RT "Molecular analysis of the genomic RNAs 1 and 2 of the first Arabis mosaic RT virus Spanish isolate"; RL Unpublished. XX RN [2] RP 1-7336 RA Lopez-Fabuel I., Olmos A., Bassler A., Dupuis L., Torres L.B., RA Bertolini E., Wetzel T.; RT ; RL Submitted (25-APR-2012) to the INSDC. RL Instituto Valenciano de Investigaciones Agrarias (IVIA), Centro de RL Proteccion Vegetal y Biotecnologia, Carretera Moncada a Naquera km 5, RL Moncada, Valencia 46113, Spain XX DR MD5; 3c09ec983cbecf95f3b50aa0bdf052ec. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7336 FT /organism="Arabis mosaic virus" FT /segment="RNA1" FT /host="grapevine cultivar Tempranillo" FT /isolate="DU13" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:12271" FT CDS 231..7085 FT /codon_start=1 FT /product="polyprotein P1" FT /db_xref="GOA:M9PM81" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:M9PM81" FT /protein_id="AGD98722.1" FT /translation="MWQISEGSQCCCTGKTWSNAEAKEARYVCNCILSCRLVKVEVVPQ FT LPKSRIAPAQSGAERVTPLCNLNGGIAPTTLKSKRVFVPNVPLFKQRCDVVVRVGPPAN FT LDLVYPALVQDEVATPPTEKVLQPTLKADVRVPVSCAPKWMVVFPKPPIKIAPKGVELQ FT FPAKAVAFNGVNFVDAKGKVVLSEGAKRILRGIRVAKQQRQRAARRSAACKEVRKARDL FT ALFKRLSEERTFQELPGGFMGEIPIGNMCYGKPIASPNATFKKVVSKGKKTVKSSKPAL FT SVQDFSCIEDFDWGEKSSAVNIEDDWILVEKPVLKRRAAHSVQGRATEALTRFAASSGF FT TVKAHQKVEDLASTSEAGHLIAGEFAELCLRSLVYNDAPVLSASIEELVTEQDFKDAIE FT LFNVELAELPTESTTCGRFNDWASTAKTMAKGVGSMVGDFARMSGAGVLITFDKCIEYL FT QEKALTLCQRVFNATMAPYLSHLAEASNIISKIWKKLAEWMESLKGKAGLALEVLAQHA FT IFALGAIVVGGVVVLVEKVLVACKIIPSCGIVLGAFLTLFFASLGLTALECTAEEIFRM FT HQCCKGAIYSMYSVKEPMSEAEGSSITMGVLQGLDNAVSALTRVGQSMISFKLGSFSYY FT AKIAQGFDQLARGKKAIGELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSWLL FT KSKRVRLQVETMAIGDRITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSKL FT EEVHQRTACAGINEGMRQFPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVYSR FT PKTGGIWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSMDS FT PLVVTTANTVKPPTNAGITDEDSFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNK FT CAYVDSEGVPQGPAVNTPMEEGWVSPSEAVAVLKNLLGEHVLAEEEKLLDYRERIGNDH FT PIYNAAQEFIGNMHYPGQWLTTEQKNTYGINEEGFSFLAVDGKMYKYNVLGKLNPCETI FT PPHPNVVPWLEEKTLSIVHWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVDLMGKDS FT SPEQQAFFKRLSLSERIYLRLCQIRIDAVKKEQLNGVSRGVLDVLRDCMNKSKARLAEN FT YSLLLTLVAILVLIATAYSLISTLVGLAGCSSFAGGLVALNHVSSASIPCSEPRLEEGY FT IPRNKFVSRISRTRGDGPAQGQGDHEDLVTELYYYFDGVKRLISCCWFRGRSLLMTRHQ FT AMAIPLGNEVQIIYADGTERKLVWPGRQEDGSCKGYIEFPDNELVVFEHARLLTMPVKY FT EKYFVDDPDHQISPNVAVKCCVARLEDGLPQFHFWNKYASARSDVHTIKDEGGSAVYQN FT KIRRYIIYAHEAKRNDCGAIAVAEIQRTPKVIAMLVSGIGNVTYSSVIPNYSSSFVRGD FT VPYVPEDGIKTNGYRKIGYLMAKDAPHVPSKTAFMRVPDEICFPYPNPKQPAILSAEDE FT RLKGTVHEGYTPVREGMRKFAEPMHLLDAQLLDEVAGDMVHTWFDAGEFLEDVPLSVAI FT NGDVDEEYFDPIAMDTSEGYPEVLQRKPGEKGKARFFVGEPGAREFVPGCGPEKAYLVL FT EEECKTCIPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMK FT KRGYLPCQVGINPYSREWTDLYHRLAEKSDVGYNCDYKGFDGLITEQILTVIAKMINAG FT FRNPVSNQQRSNLLLAISNRLSICGNQVYETESGIPSGCALTVVINSIFNELLMRYCYK FT KIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTHFTGDALKAEMAGLGVTITDGKDKS FT LATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDNVN FT TALVELFLHQDREYLESVRNFYLEKLPPGSYKELTTWHEAQTFHECQLSGESGWKPQGL FT IEVSHNASFASFVQQNGTELERHDICPGLAISGARYIAKEEEILLSLSSLLPGDVNAVK FT LTLKCGDGIGRLPSRASVLNQRKPGIVMQLCARALKEKKTLVIRDERPYIGGWAMACIC FT GESFGFSIKDTLALYANLMGPNRKNGLATYFTDFDSPIHVKRVHAVTNGEEGVAMLKES FT FAFCEPTTVVATSCDTRREMVSHLPMSFPNVVLIGGISFPKEGGEPGALYSSTDVVMSK FT KLQGVYVSEAILKCCLRCPGVAVKTVLQTSSPGSSLSQAHFRSLRRIQSHRCVRKP" XX SQ Sequence 7336 BP; 1953 A; 1420 C; 1813 G; 2150 T; 0 other; atgaaaattt ttgatgtgag tttttataca aacgcaatcc gcaatctttt caatcaagag 60 tttaagaaac tcaaaaattc caacaattaa tccgttaaga gcggaaacca aaccaaaccg 120 ttaagagcgg taccaagaga agagtctaag aaactcattg ttttattctg cattttatct 180 acgccgtatt tgtttagttt atattttgtt gctttaaggc ttttgccact atgtggcaga 240 tttctgaggg ttcccagtgc tgttgcactg ggaaaacctg gtctaatgcc gaggctaagg 300 aagcccggta tgtctgcaac tgtattctca gttgcagact tgttaaagtt gaggtagtac 360 ctcaacttcc gaagagcagg atagcgcctg ctcaaagtgg ggcagagagg gtaacacctc 420 tttgcaattt gaatggtggg atagctccca ccacccttaa atccaaaagg gtctttgtgc 480 ccaacgtgcc tttgtttaaa caaaggtgtg atgttgtcgt tagggttggc ccgccggcca 540 accttgactt ggtgtatcct gctcttgtgc aggatgaggt ggcaacccca cctactgaaa 600 aggttctgca gcctacctta aaggctgatg taagggtgcc tgtttcttgt gcaccaaagt 660 ggatggtggt tttccccaaa ccacccatta aaattgctcc taagggagta gagctacagt 720 ttcctgcaaa ggctgtagct tttaatggtg tcaattttgt tgacgccaag gggaaagtcg 780 tcctatctga gggcgcaaag aggattctta gaggaatccg cgttgctaaa cagcaacgtc 840 aaagagctgc acgcagatct gctgcgtgca aggaggtacg caaagccaga gatctggctt 900 tgtttaagcg cttgtctgaa gagcgcacct ttcaggaact gcctggaggg tttatgggtg 960 agattcccat aggaaacatg tgctatggca agcccatagc ctctcccaat gccaccttta 1020 agaaggtggt ttccaaaggt aagaagactg tgaagtcttc taagccagct ctgtcagtgc 1080 aggatttctc ctgcattgag gattttgact ggggggagaa atcctctgca gtcaacatcg 1140 aggatgattg gatcctcgtg gaaaaacctg tcctgaaaag gcgggctgca cactctgtgc 1200 agggaagggc tactgaagcc cttactagat ttgccgcctc aagcggcttt acagtgaaag 1260 cccaccaaaa ggtggaggat ttggcttcaa ctagtgaggc cggtcattta atagcagggg 1320 agtttgcaga gctttgcctg agatctttgg tgtacaatga tgcacccgtt ttatctgcct 1380 ccattgaaga acttgttact gaacaggatt tcaaagatgc tatagagctc ttcaatgttg 1440 agttagccga attgccaact gagtccacta catgtgggcg ttttaatgac tgggcttcta 1500 ctgccaagac gatggctaag ggagttgggt ctatggttgg cgattttgcc cgtatgtctg 1560 gggctggtgt gcttattact tttgataagt gcattgagta tttgcaagag aaggccttga 1620 cactttgtca gagagtgttt aatgccacca tggcccccta tttgagccac ttagcagaag 1680 cttccaatat aattagtaag atttggaaaa agctggctga gtggatggag agcttaaagg 1740 gcaaagctgg gttggctcta gaagtgcttg cacaacatgc tatctttgcc cttggagcca 1800 tagttgtggg aggagttgtt gtcctcgttg agaaagtact agtagcttgc aaaattattc 1860 ccagttgtgg gattgtgcta ggtgcttttt taactctctt ctttgccagc ttggggttaa 1920 cggctcttga gtgtacagct gaagaaattt tccgaatgca ccagtgttgt aagggtgcta 1980 tatatagcat gtactccgtg aaagagccca tgagtgaagc tgaggggagt tccataacga 2040 tgggagtact acaggggctt gataatgcag tgtctgccct tacgagagtt ggccagagta 2100 tgattagttt taaacttggg agcttctcat attatgccaa gattgcccag gggtttgacc 2160 agcttgccag gggaaagaaa gcaataggcg aactcaccag ttggctcatt gatcttgtag 2220 ggagtgttta ttccaaagtt tcaggacagg aaagcacttt cttcgatgaa ttgtcaacta 2280 tagtgtgcct ggacgttaga tcctggttgt taaagagcaa acgtgtgaga ttgcaagttg 2340 aaactatggc cattggtgat agaatcactc ttgatactat ttccaaacta cttgaagaag 2400 gccataaaat tcttgttact gcagctggcg tgcccaggaa gacttctgcc gatttcacaa 2460 tgtgtatcaa agaagaagtt tccaaactgg aagaagtaca tcagcggact gcttgtgctg 2520 gtattaatga gggaatgcgc cagtttcctt tttgggtgta tatttttggt gcttctcaat 2580 ctgggaagac tactattgcc aattctgtta taattccttc gctcctggag gaaatgaacc 2640 ttcctaagac ttctgtgtat tccagaccca aaacaggagg tatttggagt ggatatgcaa 2700 ggcaggcatg cgttaaagtt gatgatttct acgctataga gcaaacgccc agtcttgcct 2760 cttctatgat agacgtggtg aattctgaac catatcctct agacatggcc tatttgcatg 2820 aaaaaggtat gtctatggat tcaccactag tagtgacaac tgcaaacaca gttaagcccc 2880 ccaccaatgc tggtataact gatgaggatt ctttctttaa tcgtcgcgca gctgtcatag 2940 aagtgcgcag gaaggacaat actcatttca caccccgtgc atatgataat tgcattgaag 3000 tgaggttctt gcacaacaag tgtgcatatg ttgattctga aggtgttcct caggggcctg 3060 ctgtaaatac acctatggaa gaaggatggg tttctcccag tgaggctgtt gctgtactca 3120 agaatctttt gggagaacat gttcttgctg aagaggaaaa attgttggat tatcgtgaaa 3180 gaattggcaa cgaccatcct atttacaatg cagcacagga attcataggt aatatgcact 3240 atcctggaca gtggttaacc acggaacaga aaaataccta tggaatcaat gaagaaggat 3300 tctccttctt ggcggtcgat gggaaaatgt acaagtacaa tgtgctgggc aagttgaatc 3360 cttgtgaaac aataccgcca caccccaatg tggttccgtg gttggaggaa aagacattgt 3420 caatagtgca ctgggacgtg cataaacata tagctaccgg tcctcgaaat gctttggttt 3480 cttgcttttt gcaaggtctt gtgcaggacc agagtcgagt ccagagcgtc gatctgatgg 3540 gcaaagacag ttcacccgaa cagcaagcct tttttaaacg gttgtcccta tctgagagaa 3600 tttatctcag actgtgccaa atccgcattg atgctgttaa aaaggaacaa ttgaatggcg 3660 tgtctagagg agttctagat gtgctgcgag attgtatgaa caaaagcaaa gccaggcttg 3720 cagagaatta ttccttatta ttaaccctgg ttgcaatttt ggtcttaatc gccactgcct 3780 attctttaat ttctactctg gttggactag ctgggtgctc gagctttgct ggagggttgg 3840 ttgcgttaaa ccacgtttcc agtgcttcta ttccatgttc ggaaccccga cttgaggaag 3900 gctatattcc cagaaataag tttgtgtcgc gcatttctag gacgagagga gatggccctg 3960 cgcaaggcca gggggatcat gaagatttgg tcactgaact ctattattac tttgatgggg 4020 ttaagagact tatttcttgt tgttggttta gaggacgttc ccttttgatg acaagacatc 4080 aagcgatggc cattccctta ggaaatgagg ttcagatcat ctatgctgat ggtactgaaa 4140 gaaaacttgt ttggccaggc aggcaggaag atggttcttg taaaggatac attgaatttc 4200 ctgataatga acttgtcgta tttgaacatg ctaggcttct gactatgcct gttaaatatg 4260 agaagtattt tgtggacgat cccgaccatc aaatttcccc taacgttgcc gtaaaatgct 4320 gtgttgcgcg acttgaagat ggtctccctc aatttcattt ttggaacaaa tatgcttctg 4380 ccagaagtga tgtgcatacc attaaagatg aagggggaag tgcggtgtac cagaataaaa 4440 tcaggaggta cataatatat gcacatgaag caaagagaaa tgactgcggg gctattgctg 4500 tcgctgaaat acagcgtacc ccaaaagtta ttgccatgct tgtttctggg attggtaatg 4560 tgacctattc ttctgtgatt ccaaattaca gttcctcatt tgtgagaggt gatgtgcctt 4620 atgtgccaga agatgggatt aagacaaatg ggtataggaa aattgggtat cttatggcaa 4680 aagatgctcc gcatgttcca agtaaaacgg cattcatgag agtgccagat gaaatttgtt 4740 ttccttatcc caatcctaag cagcctgcca ttctgagtgc agaagatgaa cggttaaagg 4800 gtaccgtcca tgaaggatat actcctgtcc gggagggcat gaggaagttt gctgaaccaa 4860 tgcacctgct tgatgcgcaa ttacttgatg aagttgcagg tgatatggtt cacacgtggt 4920 ttgatgcagg ggagttctta gaagatgtgc ctctaagtgt tgccatcaat ggtgacgtgg 4980 atgaggaata tttcgacccc attgctatgg atacttctga aggatatcct gaggtgttac 5040 aaagaaaacc tggggaaaag gggaaagctc gtttctttgt tggggagcca ggggcaagag 5100 aatttgtgcc tggatgtggg ccggaaaaag cctatttagt ccttgaagag gaatgcaaga 5160 catgcatccc ttccttgatt agtattgaaa cacccaaaga tgagagactg aagcgatcga 5220 aaattgaaac tccgggaact agattgtttt ctgtgttgcc tctggcatac aatctacttt 5280 tgcgagtcaa atttttgtcc ttttcccgtt tgttaatgaa gaagagaggt tacctaccct 5340 gccaggtggg catcaaccct tatagccgag agtggactga cttataccac cgactggcag 5400 aaaagtcaga cgtgggatac aattgcgatt ataagggatt tgacggccta atcacagagc 5460 aaattttaac cgttattgca aaaatgataa atgcaggatt tcgtaatcct gtgagtaatc 5520 aacagcggtc taatcttttg ctagctatta gtaaccgact ctcaatttgt ggaaatcagg 5580 tttatgaaac tgagtctggt attccttcag ggtgcgcatt aacagttgtc attaattcta 5640 tattcaatga attgttgatg cgctactgtt ataagaaaat cgttcctccc atttaccgtg 5700 aatgcttcga tagatgtgtt gtcttaatca cttatggtga tgacaatgtg tttacagtgt 5760 ctcaatccat tatgacgcat ttcactggtg atgctctcaa agctgaaatg gctggtttgg 5820 gggtaacgat tactgatggc aaggataaga gccttgccac aattccagct cgcccacttc 5880 tggaattaga gtttttaaaa cgtgggttca aaaaggggaa tggaggtttg atttatgctc 5940 ccctggaaaa attgtccatc atgagttcac ttgtgtatat tcggagtgat ggatcagata 6000 tgttgcagaa actcgttgat aatgtgaaca cagccctcgt tgaattgttt ctgcaccagg 6060 atagagagta tttggaaagt gtccggaatt tctatcttga aaaacttccc cctggatctt 6120 acaaggaact gacaacatgg catgaagccc aaacctttca cgagtgtcaa ctcagcgggg 6180 aaagtggttg gaaaccccaa ggactaatag aagttagtca caatgctagc ttcgctagtt 6240 ttgttcaaca gaacggaact gagctagaac gtcatgacat ttgtcctggg ttggccatat 6300 ctggggctag atatattgcc aaggaagagg agatattact gtcccttagt tcccttttgc 6360 caggtgacgt taacgccgtg aagcttactc ttaaatgcgg agatggcatt ggtcgccttc 6420 cttcaagagc tagtgtgttg aatcaaagaa aacctggtat tgttatgcag ctgtgtgcgc 6480 gagccctcaa agaaaagaag actcttgtta ttcgcgatga gaggccctat attggggggt 6540 gggccatggc ttgcatttgt ggggaaagtt ttggcttttc cattaaggac accttggcgc 6600 tttatgccaa tctcatggga cctaatagaa aaaatggact cgctacttat ttcacagact 6660 ttgatagtcc aattcatgtg aagcgagtcc atgccgttac taatggggag gaaggagtag 6720 ccatgttgaa agagtctttt gctttctgcg aacccaccac tgttgtagct acttcatgtg 6780 acacgagaag ggaaatggta tcacatttac ccatgtcgtt cccaaatgtt gtattgattg 6840 gtgggattag tttccccaaa gagggaggag aaccaggggc actatattct tccactgacg 6900 ttgttatgtc caaaaagtta caaggtgttt acgtcagtga agccattttg aaatgttgct 6960 tgagatgccc tggtgttgct gttaaaacgg ttctccaaac ttcttctcct gggagtagtt 7020 tgtctcaagc tcatttcaga agtttacgcc ggatacaatc acatcgatgt gtgcgaaagc 7080 cataagtgat tcttcctcta tgtatggtac tgggataacc atcgttaaat aacccagttt 7140 tagcactgct catgctctgt tgagtgcttc atattttaga gtattttgta ttatattcat 7200 atttagcttg tttactgctt ttgcgtggtt aatttcatgc ttttagtggc gacagtgtgt 7260 agtttgtcct ttagacacac ttgccttgtt ggacgcaaaa agattttact ttctttttac 7320 tgcctttatg tttttt 7336 //