ID   JQ968542; SV 1; linear; genomic RNA; STD; VRL; 1050 BP.
XX
AC   JQ968542;
XX
DT   29-JUL-2012 (Rel. 113, Created)
DT   05-APR-2013 (Rel. 116, Last updated, Version 3)
XX
DE   Velvet tobacco mottle virus clone PIR24 RNA dependent RNA polymerase (RdRp)
DE   gene, partial cds; and coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Velvet tobacco mottle virus
OC   Viruses; Riboviria; Solemoviridae; Sobemovirus.
XX
RN   [1]
RP   1-1050
RX   DOI; 10.1007/s11262-012-0801-2.
RX   PUBMED; 22983896.
RA   Arthur K., Collins N.C., Randles J.W.;
RT   "Mutation rate in Velvet tobacco mottle virus varies between genomic region
RT   and virus variant but is not influenced by obligatory mirid transmission";
RL   Virus Genes 45(3):575-580(2012).
XX
RN   [2]
RP   1-1050
RA   Arthur K.R., Collins N.C., Randles J.W.;
RT   ;
RL   Submitted (22-APR-2012) to the INSDC.
RL   School of Agriculture, Food and Wine, University of Adelaide, Waite Rd.,
RL   Adelaide, SA 5064, Australia
XX
DR   MD5; 37e04d4f1ffd460bb7ee14ddf6427935.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1050
FT                   /organism="Velvet tobacco mottle virus"
FT                   /isolate="VTMoV-R17"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /isolation_source="mirid insect transmission 24 months"
FT                   /collected_by="Kieren Arthur"
FT                   /collection_date="Jul-2010"
FT                   /clone="PIR24"
FT                   /PCR_primers="fwd_name: vtmov-cpf5, fwd_seq:
FT                   gatttcccgcaacaagttttggctca, rev_name: vtmov-cpr4, rev_seq:
FT                   cgcttgcctagcggtcagtt"
FT                   /db_xref="taxon:12473"
FT   gene            <1..448
FT                   /gene="RdRp"
FT   CDS             <1..448
FT                   /codon_start=2
FT                   /gene="RdRp"
FT                   /product="RNA dependent RNA polymerase"
FT                   /db_xref="UniProtKB/TrEMBL:I6ZW31"
FT                   /protein_id="AFN89805.1"
FT                   /translation="ISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDY
FT                   CCQVGLVPDKTYWEEDHPADYVEETHQEPGQADDTGNLAERADFCSVPTTETPKVDAAR
FT                   AEFYSYGPNGWSCDMPEATHVNQWPLWGYSSSFGGGFGSPIRDY"
FT   gene            198..1043
FT                   /gene="CP"
FT   CDS             198..1043
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:I7B0S3"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:I7B0S3"
FT                   /protein_id="AFN89806.1"
FT                   /translation="MSKKLTKNQVKQMIQATLPKEQTSARSRRRRRRRSTQQGQSSTVM
FT                   APMAGAVICRKRPMLINGRSGVTVRHSEVVLVVQSGTTNFSATSVTLAPNTFTWLAVQG
FT                   SLYSKWRWISLRATYVPETASTTPGTVAMGFQYDNTDVLPTGTAGMSSLHGFVSGAPWS
FT                   GFSGSKLLAESPTTPIPAGAIATRLDCQNFGLKWYQYKSVIPAGDSGNIYIPAQLIVGT
FT                   LGTGSTLRYGEVHIQYEIEFIEPLPPSVNTLRDIYSRMILSSASDERKGEKSSQTLTDR
FT                   "
XX
SQ   Sequence 1050 BP; 260 A; 256 C; 257 G; 277 T; 0 other;
     gatttcccgc aacaagtttt ggctcacaag ctggcctaaa accttgtaca ggttcctaga        60
     ctctccctct gaaaattttc atgatcttga aagggaactt ggctcatgtc ccaagtgggc       120
     caagataaag gattattgtt gtcaggtagg actggtccct gacaaaacat attgggaaga       180
     agatcaccct gctgactatg tcgaagaaac tcaccaagaa ccaggtcaag cagatgatac       240
     aggcaacctt gccgaaagag cagacttctg ctcggtcccg acgacggaga cgccgaaggt       300
     cgacgcagca agggcagagt tctacagtta tggccccaat ggctggagct gtgatatgcc       360
     ggaagcgacc catgttaatc aatggccgct ctggggttac agttcgtcat tcggaggtgg       420
     ttttggtagt ccaatccggg actactaact tctcggccac ttctgttact ctcgcgccta       480
     acactttcac ctggttagct gtacaaggat ccctctattc taaatggagg tggatatcgc       540
     ttagagccac gtatgtgccc gaaaccgctt ctacgactcc cggaactgtg gcaatgggtt       600
     tccagtatga caatactgat gtcctaccca ctggaaccgc tggtatgtct agtttgcatg       660
     gttttgtgtc aggcgctccg tggtcaggct ttagtggttc taaactcctc gctgaaagtc       720
     ccaccactcc catccctgct ggagcaatcg caactcgact tgactgtcaa aatttcggtc       780
     tcaaatggta tcagtacaag tctgttatac ctgctggtga ttctggaaac atctatattc       840
     cagctcagtt gattgtcggt accctgggga ctggttcaac tttgagatat ggtgaagtgc       900
     acatccagta tgagattgag tttattgagc cccttcctcc ttcggtgaac actctcagag       960
     atatttactc taggatgatc ctaagttcgg cgtcagatga aaggaaaggt gagaagtcta      1020
     gtcagacttt aactgaccgc taggcaagcg                                       1050
//