ID   JQ954735; SV 1; linear; genomic RNA; STD; VRL; 1579 BP.
XX
AC   JQ954735;
XX
DT   08-OCT-2012 (Rel. 114, Created)
DT   08-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate M117 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   "Genetic variability and population structure of Sugarcane streak mosaic
RT   virus (SCSMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL   Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL   West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
XX
DR   MD5; 12e68e05d03cc8417304adb1b135c94e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1579
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="sugarcane"
FT                   /isolate="M117"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Wenfeng Li and Zhen He"
FT                   /collection_date="03-Jun-2011"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1579
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /note="contains NIa-Pro protein and NIb protein"
FT                   /db_xref="GOA:K0IIF6"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:K0IIF6"
FT                   /protein_id="AFU50427.1"
FT                   /translation="WDDGKQRWDSREGTYTNVFKTLYDLDPTKFKYVVAEAPGYRFKKR
FT                   LNRQEKKRLSETIIEGIRSQMASEGVYDYPEVTQATLYLFGDPGQPAKKVILTPHNPLA
FT                   VSQGSGNPVGFPSNRGELRQTGAAMEMTEEEKQQALASETIVMHAQARIDISHVEKNVG
FT                   LISDGSYTSQCFITQSWCVAPYHLASYFKQTSNTLTITTTSGHYTLPRPLVHKILNHDL
FT                   VIFKMPGDFPPMKKISCFRKPNPDDEIVLITTKRTPSGLRTTFSSSFYISEHHSGMMQY
FT                   ALKSVPGFCGGPIMSIKDGQIIGFHSAARVVNMQDRGSTFTCVNDEVIEVLQSESSQTL
FT                   IPWLFNEEMVQWKGVNSNLDPRNFPIAKTHTELVFHGAEIQHGTDKYFGDNLTIQGRIN
FT                   QSFNNRHVIKGSDTYFDEFVMHVRPAPERVDAHLPSDLSVEAFFKDFLKYATPVELGRV
FT                   DLGCLASAVDKVIGHLEDQGFTPKEFQVETNFYTLLNSMNLDTAMGALYQTKKRDVLAP
FT                   ATHEELST"
XX
SQ   Sequence 1579 BP; 494 A; 335 C; 354 G; 396 T; 0 other;
     attgggatga tggaaaacag cgatgggatt cacgtgaagg cacctacacg aatgtgttta        60
     agacattata cgacctggat ccaactaagt tcaaatatgt tgttgctgaa gcccctggat       120
     atcgttttaa gaaaagactt aacagacaag agaagaaaag attatctgaa actattattg       180
     aaggaattag gtctcaaatg gcctcagaag gagtgtacga ttatcccgag gtgactcagg       240
     caactttgta tctatttggt gatcctggcc aaccagctaa gaaggtcatt ctaacaccgc       300
     acaacccact ggctgtctca caaggaagtg gcaaccctgt tggatttcca agcaatcgtg       360
     gagagcttcg acaaactgga gcggccatgg aaatgacgga agaggaaaag caacaagcgt       420
     tagcgagtga gacaatagtg atgcacgccc aagcacgaat agatatttca catgttgaga       480
     aaaacgttgg gttaatctca gatgggtcgt acacttcgca atgctttatc acacagagct       540
     ggtgtgttgc tccataccac cttgcgagct attttaaaca aactagtaat acattgacaa       600
     taaccacaac ttctggacac tacacactgc ctcgaccgtt ggtgcacaaa attctcaatc       660
     atgatttagt aatcttcaaa atgcctggcg actttccacc gatgaaaaag atttcgtgtt       720
     ttcgaaaacc caatccagat gacgaaattg ttctaatcac aactaaaaga acgccgtctg       780
     ggttgagaac aacattctca tcgtcgtttt atatcagtga acatcactcc ggtatgatgc       840
     agtatgcact caaatcggtg ccaggctttt gtggaggacc aatcatgtca atcaaggatg       900
     gccaaatcat tggattccac tcggcagctc gagtagtgaa catgcaagat cgtggatcaa       960
     cattcacttg tgttaacgat gaggtcatcg aagtcttgca atcagagagc tcgcaaacat      1020
     taattccgtg gttgtttaat gaggagatgg tccaatggaa gggtgtcaat tcaaatctcg      1080
     atccaagaaa ctttccgatt gcaaaaacac atacggagct tgtttttcac ggcgcagaga      1140
     tacaacacgg cacagacaaa tactttggcg acaatctcac gatacaaggg cgaatcaatc      1200
     aatcattcaa caacaggcat gtcatcaaag gatcggacac atatttcgac gagtttgtta      1260
     tgcatgttag accagcacca gagcgagtgg acgcgcatct accgagtgat ctcagtgtgg      1320
     aagctttctt taaggatttt ctcaaatatg ccacacctgt tgagcttgga cgagtggatt      1380
     tgggctgtct ggcgagcgct gtggacaaag ttattgggca tcttgaagat caaggattta      1440
     caccaaaaga attccaagtt gaaacaaatt tttatacact tcttaattca atgaacttgg      1500
     acacggcaat gggagctttg taccaaacta agaagcgcga tgtccttgca ccagccacac      1560
     acgaagagtt gagcacttg                                                   1579
//