ID   JQ954733; SV 1; linear; genomic RNA; STD; VRL; 1579 BP.
XX
AC   JQ954733;
XX
DT   08-OCT-2012 (Rel. 114, Created)
DT   08-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate M126 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   "Genetic variability and population structure of Sugarcane streak mosaic
RT   virus (SCSMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL   Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL   West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
XX
DR   MD5; 664a25cf40dcebf74c4e850f98f5e3d2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1579
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="sugarcane"
FT                   /isolate="M126"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Wenfeng Li and Zhen He"
FT                   /collection_date="03-Jun-2011"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1579
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /note="contains NIa-Pro protein and NIb protein"
FT                   /db_xref="GOA:K0ICX6"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:K0ICX6"
FT                   /protein_id="AFU50425.1"
FT                   /translation="WDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYVVAEAPGYRFKKR
FT                   LNRQEKKRLSETIIEGIRSQMASEGVYDYPEVTQATLYLFGDPGQPAKKVILTPHNPLA
FT                   VSQGSGNPVGFPSNRGELRQTGAAMEMTEEEKQQALASETIVMHAQARIDISHVERNVG
FT                   LISDGSYTSQCFITQSWCVAPYHLASYFKQTSNTLTITTTSGHYTLPRPLVHKILDHDL
FT                   VIFKMPGDFPPMKKISCFRKPNPDDAIVLITTKRTPSGLRTTFSSSFYISEHHSGMMQY
FT                   ALKSVPGFCGGPTMSIKDGQIIGFHSAARVVNMQDRGSTFTCVNDEVIEVLQSESSQTL
FT                   IPWLFNEEMVQWKGVNSNLDPRNFPIAKTHTELVFHGAEIQHGTDKYFGDNLTIQGRIN
FT                   QSFNNRHVIKGSDTYFDEFVMHVRPAPERVDAHLPSDLSVEAFFKDFLKYATPVELGRV
FT                   DLGCLASAVDKVIGHLEDQGFTPKEFQVETNFYTLLNSMNLDTAMGALYQTKKRDVLVP
FT                   ATHEELST"
XX
SQ   Sequence 1579 BP; 495 A; 337 C; 354 G; 393 T; 0 other;
     attgggatga tggaaaacag caatgggatt cacgtgaagg cacctacacg aatgtgttta        60
     agacattata cgacctggat ccaactaagt tcaaatatgt tgttgctgaa gcccctggat       120
     atcgttttaa gaaaagactt aacagacaag agaagaaaag attatcagaa actattattg       180
     aaggaattag gtctcaaatg gcctcagaag gagtgtacga ttatcccgaa gtgactcagg       240
     caactttgta tctatttggt gatcctggcc aaccagctaa gaaggtcatt ctaacaccgc       300
     acaacccact ggctgtctca caaggaagcg gcaaccctgt tggatttcca agcaatcgtg       360
     gagagcttcg acaaactgga gcggccatgg aaatgacgga agaggaaaag caacaagcgt       420
     tagcgagtga gacaatagtg atgcacgccc aagcacgaat agatatttca catgttgaga       480
     gaaacgttgg gttaatctca gatggatcgt acacttcgca atgctttatc acacagagct       540
     ggtgtgttgc tccataccac cttgcgagct attttaaaca aactagtaac acattgacaa       600
     taaccacaac ttctggacac tacacactgc ctcgaccgtt ggtgcacaaa attctcgatc       660
     atgatttagt aatcttcaaa atgcctggcg actttccacc gatgaagaag atttcgtgtt       720
     ttcgaaaacc caatccagat gacgcaattg ttctaatcac aactaaaaga acgccgtctg       780
     ggttgagaac aacattctca tcgtcgtttt atatcagtga acatcactcc ggaatgatgc       840
     agtatgcact caaatcggtg ccaggctttt gtggaggacc aaccatgtca atcaaggatg       900
     gccaaatcat tggattccac tcggcagctc gagtagtgaa catgcaagat cgtggatcaa       960
     cattcacttg tgttaacgat gaggtcatcg aagtcttgca atcagagagc tcgcaaacat      1020
     taattccgtg gttgtttaat gaggagatgg tccaatggaa gggtgtcaat tcaaatctcg      1080
     atccaagaaa ctttccgatt gcaaaaacac atacagagct tgtttttcac ggtgcagaga      1140
     tacaacacgg cacagacaaa tactttggcg acaatctcac gatacaaggg cgaatcaatc      1200
     aatcattcaa caacaggcat gtcatcaaag gatcggacac atatttcgat gagtttgtta      1260
     tgcatgttag accagcacca gagcgagtgg acgcgcattt accgagtgat ctcagtgtgg      1320
     aagctttctt taaggatttt ctcaagtatg ccacacctgt tgagcttgga cgagtggatt      1380
     tgggctgtct ggcgagcgct gtggacaaag ttattgggca tcttgaagat caaggattta      1440
     caccaaaaga attccaagtt gaaacaaatt tttacacact tcttaattca atgaacttgg      1500
     acacggcaat gggagctttg taccaaacca agaagcgcga tgtccttgta ccagccacac      1560
     acgaagagtt gagcacttg                                                   1579
//