ID JQ952600; SV 1; linear; genomic RNA; STD; VRL; 8594 BP. XX AC JQ952600; XX DT 17-JUL-2012 (Rel. 113, Created) DT 17-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Tomato chlorosis virus isolate ToC-Br2 segment RNA1, complete sequence. XX KW . XX OS Tomato chlorosis virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8594 RA Albuquerque L.C., Villanueva F., Navas-Castillo J., Resende R.O., RA Inoue-Nagata A.K.; RT "Molecular characterization of an isolate of Tomato chlorosis virus (ToCV) RT from Brazil reveals that it is more closely related to an European RT isolate"; RL Unpublished. XX RN [2] RP 1-8594 RA Albuquerque L.C., Villanueva F., Navas-Castillo J., Resende R.O., RA Inoue-Nagata A.K.; RT ; RL Submitted (19-APR-2012) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; 7bd7f3aa6ef555eea3e05b7d5af42418. XX FH Key Location/Qualifiers FH FT source 1..8594 FT /organism="Tomato chlorosis virus" FT /segment="RNA1" FT /host="Solanum lycopersicum" FT /isolate="ToC-Br2" FT /mol_type="genomic RNA" FT /country="Brazil:Sao Paulo" FT /collection_date="2006" FT /db_xref="taxon:67754" FT CDS 304..6141 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1a; encodes papain protease, methyltransferase FT and helicase" FT /db_xref="GOA:I6XKK0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6XKK0" FT /protein_id="AFN44464.1" FT /translation="MDSQQNLVSFNVDFTEKKIKDTFRVVKRHISNKYNKSFKKRLFLC FT SCDLNVSIAANSVSTAQGCSVRARIKTRMNVLRQLCGIPHCNFNKLPVSVYRKFGHDFH FT RINSAIDRYLESSVGSTGGKSLEEIERIDGYTDHGDGYRVRLYSDVNICDVFVKFNADV FT ATGHDLKIRLQRQKNRITGQVRTVVHAAKNGFGLDFSLWCDSFLLTDSKTSGQKMVMDM FT IAAVAMKVPDVLPGFDRLYSRVFSKNFKQIRSAFIRECKKYMQTSCDKANASHREKVTL FT KVKPSVAVKNVPDVTHKVGPDGAESFVVTYSDGKQRIIVNDDGAVRNLFNATLTNGKYF FT IHPKAMIPDKSFFSSKTTEYCWLNAFAAVNKKIPDFVVPYPCLRMRVLYNCGLGSVVEK FT HCKFVKAGLYHFDLRYCAPGKPINLNGYVGSKVDTDIPSLGKNINVIFDDLIGHYVQGT FT NLRSDNLLSSNIVNRLSDRINTMFSKPKDLSIATSLTASEKRKVIDMFPELCLNFTDTS FT YSSHPIATAIRCCENFIMAKRCGNEDFIDAGGDVVHYMLESVKNVHVCTPIVDTKDAHR FT HISRSAMLDTMWGLKDKVSFCEHKTETCTVEKTNIVAVEVYDMTLKQMAQALLSHKAKR FT FDFSLIIPPEVCDPVCDVYLLNNSLHVTNNGDKIEYAYGDFGESYFHDRENLRDILRTQ FT MFVYNGVVFKKSLECSRDNLHFFSVVPCLGIKPGVYTLSTHYKKSESDKIEMTIPVREK FT LGQVVDKRTSVDRALTYSLIEYVMNTAARVDEKSSDYLVSQYRAKKSMTIKGNKVVPND FT CDLPVELVPGYLAIILAEGLRLREKIQYFAKISYHRHYSPSILKIFSLLIQEFVTFAKA FT KCYDGFVWFLRKCLSDKVLDKVIFGERRIHDCQFIMRFKQEVTVVGESGKHSILGDSIH FT AFTEASERAETGLADFVDGRPDLFKPDDYEKLYDLVHSGGGNAGFFSKTANYYSPFSLY FT YSIYNFFSNFTSSASRISLYTNFFISVIDWMRYHSISCFEYFKEVVKVIVCATMGKLKS FT GMQSLWDKLKRCAKEMKGLVNSDRLSLEKKLDDIFSADDEIAEALSSDVQSIVTEAVLS FT EQLISSGGGGVISRPMKCVREMYDHSRRSLRWFCTWFLQQFKLYKRNILYIPEFLRESF FT DEIFEALKLKILSNDFIEMTIQGMSFFVVNLTTSLFFGKIGLGLSAVSTVFYLSIKYTG FT LERRFLGTSFVNEHLSSAITTGGFSHPYMIPVRSLVMKSCQNWMKQKLLRYETVSPIVT FT DLIAKDVLNASVYQYVTPYRVRMGLYFSILLALLKPTFAGVLLVCILLVAEHAKFYRTV FT VVQANVHLSFASRLRRLNPTSKARAIKQLLVSKFDRKRFSKDNSDDKFCDTFEDFDCGP FT TEFGINSKDLVGAGEASTSEQPVVELDYSGNEIKGKSWGDVADDSISEPDIVDRPDGLV FT FSSLEITNQREKFLCDSSLLLSDALLQYPVVDVTTNVLTGDNIVDTFSEFFFLEKKKLH FT VELGKINNVVDFYKSSLTGKNAFYNKVWSLRNKFDDSSLYVSENSKVWYKLKQGEKGHV FT QLEGVCKYTLDNKLVPFTYFYDDFQVTSDELMGMFSNRRCLALQSITPRESGFDLNSML FT ENVTFFNKPPGAGKTTTIVRNMVRDIKSNVRCLALTCTNAGKKEIIHKLRKEGVNNAFS FT LVMTYDSFLINGGKMDTDMVYCDEIFMIHAGLWVALLSMLQFKKMECYGDKNQIPFINR FT VPNTLCQYSQKIFFLFRMIHDNVSYRCPPDVCYILSNLRDAAGNLLYPNGVKAVGPNSN FT LLRSMFVVPLRSAEEVPYSPDVKMIAFTKPEKDDIMRHGRTADGKTNSAQTVNEVQGGT FT FPKVELYRLRQYDNPIYNDVNQFVVSISRHTEVMKYRVLSTKMHDTVGQHISSLDKVAD FT HIIRECAFKQQV" FT CDS <6143..7657 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1b; translated from ORF1a by +1 frameshift" FT /db_xref="GOA:I6WZ19" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I6WZ19" FT /protein_id="AFN44465.1" FT /translation="TYRLTIEGCYIPDTFSRPASSHLMAVNDFMSVVNPGLAWMQFLHR FT TILFEYGDFDMPPVEKMVLDFSKYKPYVAGEFVVSKILGKGERTRPDSMKQGIISLSHR FT NFSAPRINERLDVYKTAERLCQNLVRSFDFSRLYENYDVILPDMFKIDDWLQDRDGSKF FT GRIKRDMDHKLLVEQFESLKFMIKGEMKPKMDMSSYTAYNPPANIIYYNHLVSMYYSPL FT FLEVFDRISYCLSKKIVMYSGMNLETLGTLIGSKLQKPLTSYHTLEIDFSKFDKSQGIL FT FKVYEGMIYRFFKFSEDYYTNIEATEYFIKYRGRCGISGELGAQRRTGSPNTWLSNTLV FT TMGIILSVYDLDDIDLFLVSGDDSLIFSSKPLKNKTDEINRDFGFEAKMIENSVPYFCS FT KYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREKFRSYKDLMKDFDYDTTCV FT LVDALVCYRYNLPPMCSYAALCYIHCLCANFTTFRRVYESDLTVVI" FT CDS 7664..8245 FT /codon_start=1 FT /product="p22" FT /db_xref="UniProtKB/TrEMBL:I6WNA7" FT /protein_id="AFN44462.1" FT /translation="MDLTGCLRKLRQCDRLLERLGNDVSEVHLRAILIDLDECSECLML FT CEQEYIRDTDCLMSFLLALKHYEIKFHMDMLNMIYDFKLKTSQLIQDVFRIKVIIRVYL FT ELCEIDPLLAMTEACQDILESGILNIGFISSALGHEPNILITILSMVDFTVVIDDRPLV FT FIPSKIRFVGDKLGSGHFRWFDKFFFGSDI" FT CDS 8265..8420 FT /codon_start=1 FT /product="p6" FT /db_xref="GOA:Q4KRZ2" FT /db_xref="UniProtKB/TrEMBL:Q4KRZ2" FT /protein_id="AFN44463.1" FT /translation="MGDRFACDSLDSIARDIHSLYILFFYTFLVGVLLTFIMSCVRGVI FT EIYRVN" XX SQ Sequence 8594 BP; 2348 A; 1470 C; 2020 G; 2756 T; 0 other; gaaaaatagt attcgtgtga ttacacaaag tactaattaa ttcagcttta aggctttctg 60 gtgtgttgcc agtttgcctg cccggttgcc actgtgttca gtgtcgacct tatcatacca 120 gcattcaccg ccatagcatt actagaaaca gcacgacgag tacactaaac taatctgcct 180 tgctttactt tgcgttctcc ttttcgtctc ggagagcgcg ccccttgccc gccgttgtgg 240 gttgttagtg ttcaccatat aaccccctct tgttgtgatt tagtagtttg tattttagct 300 attatggatt ctcagcaaaa cctagtttcg tttaacgtag attttactga aaagaaaata 360 aaagatacgt ttagagtagt taagaggcat attagtaata aatataataa atcctttaag 420 aagagactgt ttttgtgcag ttgcgattta aatgtctcaa ttgccgcaaa ctcagtgtcg 480 actgctcagg gatgcagtgt gagggctcgg ataaaaactc gcatgaacgt acttagacag 540 ttatgtggga taccacattg caatttcaac aaattaccag tttctgtata cagaaaattc 600 ggtcacgatt tccatagaat aaattctgca atagaccggt atttggaaag ttctgtgggg 660 tcaacaggtg gaaaatctct cgaggaaatc gagagaatag atggttacac ggaccatggt 720 gatggttatc gtgtaagact ttactctgac gtcaacattt gtgacgtgtt tgtaaagttc 780 aatgctgatg ttgccactgg tcacgatttg aagatcaggc tccagagaca gaagaataga 840 attaccggcc aagttaggac ggtcgttcat gctgcgaaga atggttttgg gcttgatttt 900 tctctgtggt gtgatagttt ccttctcaca gacagtaaaa cttccggcca gaagatggtt 960 atggatatga tagcggctgt tgctatgaag gttccggatg ttttgcctgg atttgaccgt 1020 ttgtactcca gagtttttag taagaacttt aagcagatca gatccgcttt tatcagagag 1080 tgcaagaagt acatgcaaac ttcttgtgat aaggctaatg caagtcaccg cgagaaagtg 1140 acactcaaag tgaagccgtc agtcgcggtg aagaacgtgc cagatgtgac ccataaggtc 1200 ggacccgatg gtgcagaatc gttcgtggtc acttattctg atgggaaaca acgcataatt 1260 gtgaatgatg acggtgccgt taggaatttg tttaacgcta ctctcaccaa cggtaaatat 1320 ttcattcacc cgaaggctat gatcccagat aaaagctttt tctcgtccaa aacaactgag 1380 tattgttggt tgaatgcctt cgctgccgtc aataagaaaa taccagattt cgttgtacct 1440 tacccatgtc ttaggatgcg ggtgctgtac aactgtggtt tgggcagtgt agttgagaag 1500 cattgtaagt ttgtaaaagc cggtttatac cattttgatc ttaggtactg tgcgcctgga 1560 aaacccatca atctcaatgg ttatgttggt tccaaggttg atactgatat accgtcccta 1620 ggtaagaaca taaatgtcat ctttgatgat ttgatcggac attatgttca aggtactaat 1680 ttgagatctg acaatctgct atctagcaac atcgttaata gattgtctga cagaataaac 1740 acaatgttta gcaaaccgaa agatctctcg atagcgactt cgctcaccgc atcagagaaa 1800 cgtaaagtga tcgatatgtt tcctgagttg tgtttgaatt tcaccgacac atcttactcc 1860 tctcatccta tagccactgc aattaggtgt tgtgagaact tcatcatggc caaacgatgt 1920 ggtaatgagg attttattga tgctggtggt gatgttgtgc actatatgtt agagagtgtg 1980 aaaaacgttc acgtttgcac accaatagtt gataccaagg atgcccatag acacatttcg 2040 aggagtgcta tgctcgatac catgtgggga cttaaggaca aggtgtcttt ctgtgagcat 2100 aaaactgaaa cttgcacagt ggagaaaact aatattgtag cggtggaggt ttatgatatg 2160 actctgaaac aaatggcaca agctcttctg tcacataagg ccaaaaggtt tgacttcagc 2220 cttataatac cacctgaggt gtgcgacccg gtgtgtgatg tgtacctgct taacaatagc 2280 ctacacgtta ccaataacgg tgacaagatt gagtacgcat acggcgactt tggtgagagt 2340 tattttcatg atagagagaa cttgagagac attctacgaa ctcaaatgtt cgtttataat 2400 ggagttgttt tcaagaagtc attagagtgt tctcgtgaca atctgcattt cttctctgtg 2460 gttccttgct tgggcattaa accgggtgtc tacactttgt caactcatta taaaaaatct 2520 gagtctgata agattgagat gacaataccc gttcgggaga aactcggaca agtcgtcgac 2580 aagcggacga gtgttgatag ggcacttact tacagcttga tagaatatgt catgaacaca 2640 gcggctaggg tggatgagaa atcctctgac tatttagttt ctcagtacag ggccaagaag 2700 agtatgacca taaaaggtaa taaagtggtg cctaatgact gcgatttacc tgtggagttg 2760 gtgccaggtt acctagctat tattttggcc gagggattga ggcttaggga gaagattcaa 2820 tactttgcaa aaattagtta tcatcgtcac tacagcccgt cgattttgaa gatattttcc 2880 ctcttgatac aagagtttgt aacgttcgct aaggctaagt gttacgatgg gtttgtttgg 2940 ttccttcgca agtgtctgtc tgataaggta cttgataagg tgatatttgg tgagaggcgt 3000 atccatgact gccagttcat aatgcggttc aagcaagagg tcactgtggt cggcgagagt 3060 ggtaagcatt cgatcctcgg tgattctatc cacgccttca ctgaagcaag tgagagagct 3120 gaaactggac tggccgattt tgtggacggt agaccggatt tgttcaagcc agatgactat 3180 gagaagttgt atgatctagt tcattctggt ggtggaaacg cagggttttt tagtaagacg 3240 gctaattatt actctccgtt ttctttgtat tattctattt acaatttttt ctcgaatttt 3300 acttcttcag cttctcgaat ttccttgtat accaatttct ttatttcagt tatagattgg 3360 atgcgttatc actctatctc ttgttttgaa tattttaagg aggtcgtaaa agtcatagtt 3420 tgtgctacta tggggaagtt gaaatcaggt atgcagtctc tttgggacaa actcaaacgg 3480 tgtgctaaag agatgaaggg gctcgtgaac agcgacaggc tgtctttgga gaaaaaactt 3540 gatgatatct tctctgcgga cgacgagatt gctgaagcat tgtcctcgga tgtacaatct 3600 attgttactg aagcagtgct ttcagagcaa ttgatctcgt ctggaggcgg tggagtcata 3660 tcacgaccga tgaaatgcgt tcgtgaaatg tacgatcatt cacggcgatc cttgcggtgg 3720 ttttgtactt ggtttctcca gcaatttaag ctttacaaaa gaaatatttt gtacattcct 3780 gaatttttaa gggagtcctt tgatgagatc tttgaggccc taaaattgaa gattttgtct 3840 aacgatttca tcgagatgac gatccaaggt atgtctttct ttgttgttaa tttaactaca 3900 tcgttgtttt ttggtaagat aggtttaggt ttgagtgccg tgtctactgt tttctacctt 3960 tccattaaat acactggttt ggagagaaga tttcttggta cttcatttgt caatgaacat 4020 ctctcttccg ctataacgac tggtggtttt tcccatccgt acatgattcc agtgaggtct 4080 ttggttatga aaagttgcca gaattggatg aaacagaaac tgttgaggta tgagacggtc 4140 tctccaatag ttactgacct tattgctaag gacgtgttaa acgcgtcagt ttatcagtat 4200 gtaactccct acagagttag aatggggttg tattttagta ttttgttggc cctactgaaa 4260 ccaacatttg ctggcgtgct cctggtgtgt attctgttgg tggcggaaca tgcaaaattt 4320 tacagaactg ttgttgttca agccaatgtt catttatcct ttgcttctcg actgaggaga 4380 ttgaatccta cttcgaaggc tagagcgatt aagcagttac tcgtttccaa gtttgatagg 4440 aagagattta gcaaggataa cagtgacgat aagttctgcg atacatttga ggactttgat 4500 tgcggtccga ccgagtttgg aataaactct aaagatttgg ttggtgctgg ggaggcctcg 4560 acgtctgaac agcctgtggt agagttggat tactccggca atgagatcaa agggaagagt 4620 tggggagatg tggctgacga ttctatttct gagccggata ttgtggacag accggacggt 4680 ctggtgtttt caagtttgga gataactaat caaagggaga aattcttgtg tgatagcagt 4740 cttcttttga gtgatgccct tttgcaatat ccagttgtgg atgtgacgac caacgtcctg 4800 actggtgata atattgttga cactttttca gagtttttct ttttagagaa aaagaaatta 4860 catgtggagt taggtaagat taataatgtt gttgattttt acaaatcctc attgaccggg 4920 aagaatgctt tttataataa ggtttggagc ttgcgaaaca aattcgacga ttcgtcgtta 4980 tatgtttcgg aaaactcaaa ggtctggtac aagttgaaac agggtgagaa gggtcatgtt 5040 caacttgaag gtgtgtgcaa atacacgctt gacaacaagc tggttccttt cacttacttt 5100 tatgatgatt ttcaggtcac cagtgatgaa ttgatgggca tgttttccaa caggagatgt 5160 ttggcattgc agtcaatcac accgcgtgag tccgggtttg accttaatag catgttggag 5220 aatgtcacgt ttttcaataa acctcctggt gctggtaaga cgaccaccat tgtgaggaat 5280 atggtgagag acatcaaaag taatgtgagg tgtttggccc tgacctgcac aaatgctggg 5340 aagaaagaga tcatacataa gctcaggaag gaaggagtca acaatgcatt cagcttagtg 5400 atgacatatg actcttttct catcaatggt ggtaagatgg atactgatat ggtctattgt 5460 gatgagatct ttatgattca tgctggactg tgggtggccc tattatcaat gttgcaattc 5520 aagaaaatgg agtgttacgg tgacaaaaac cagattccat ttatcaatag agtgccgaat 5580 actctttgtc agtactccca gaagatattt ttcttgttta ggatgatcca cgacaatgtt 5640 tcatacagat gcccgccaga tgtttgctac attttgtcta atttgagaga tgctgccggt 5700 aatctgttgt atccaaatgg tgtcaaggct gtagggccga acagcaatct tctccgttct 5760 atgttcgtgg tgccactgag atctgccgag gaagttccat acagtccgga tgtgaagatg 5820 attgctttca ccaaacctga gaaggacgac ataatgcggc atggtagaac agcggatggt 5880 aagaccaatt cagctcagac tgttaatgag gttcaaggtg ggacttttcc caaagtcgag 5940 ttgtacagat tgaggcaata tgataatccc atctacaatg atgtcaacca attcgtggtc 6000 agtatatcca gacacacgga ggttatgaaa tatagagtct tgtctacgaa aatgcacgac 6060 actgttggac aacatatatc atctttggat aaggttgctg atcatatcat aagggagtgt 6120 gcatttaaac agcaggttta acacttatcg gttgaccatt gaaggttgtt atattcctga 6180 cactttttcg agacctgcct catctcattt gatggcagtc aacgatttta tgtcagtggt 6240 caacccggga ttagcttgga tgcaattttt gcacagaact atattgtttg agtatggtga 6300 ttttgacatg ccacctgttg agaagatggt ccttgatttt tcaaaataca agccttatgt 6360 cgcaggggag tttgttgtct cgaaaattct tggcaaaggt gagaggacga gaccggacag 6420 tatgaaacag gggataatct cattgtcaca tagaaatttt tctgcaccga gaataaatga 6480 acgtctggac gtttataaga ctgctgaacg tttatgtcag aatctcgtta gatctttcga 6540 cttctcaagg ttgtatgaga actatgatgt gattcttcct gacatgttca aaattgacga 6600 ttggttgcag gatagagatg gttcgaagtt tggtcggata aaaagggata tggaccacaa 6660 attgttggtc gaacagtttg agagcttaaa attcatgatc aaaggggaga tgaaaccgaa 6720 gatggatatg tcgtcctata cagcttataa tccaccggcg aatatcatct attataacca 6780 tctggtaagt atgtattatt ctccgttgtt tctggaggtc tttgatagga tatcatactg 6840 tcttagcaag aagatagtta tgtattccgg gatgaatcta gaaactctcg gcaccctgat 6900 tggttctaaa ctgcagaagc cgttgacatc atatcacact ttggagattg atttctcaaa 6960 gtttgataag tcccaaggta tcctatttaa agtttatgag gggatgattt accggttttt 7020 caagttttcc gaggattact ataccaacat agaggccact gaatacttca taaagtatcg 7080 tggtaggtgt ggaatcagcg gggagttggg tgcacaaagg agaacggggt caccgaacac 7140 ttggttgtca aacacattgg ttactatggg tatcatactc agtgtttacg acctggatga 7200 tattgattta ttcttagtaa gtggtgacga cagtttgatc ttttcgagta aacccttgaa 7260 gaataaaact gatgagataa acagagattt cggttttgag gctaagatga tagagaattc 7320 agtgccgtat ttttgctcca aatatatcat cagtgataga ggaaaaatca gagtcgttcc 7380 tgatcctgtg aggttttttg agaagttgtc tgtcccaatt cgagttcaag attttatgag 7440 tgacactctc atgcgggaaa aatttaggtc ttataaggac ttgatgaagg actttgatta 7500 cgatacaacg tgcgttttgg tggatgcttt ggtgtgttat aggtacaatt taccaccgat 7560 gtgttcatat gcagcgttgt gttatattca ttgtctgtgt gcaaatttta ctactttcag 7620 aagagtctat gagagcgatt tgactgttgt tatttaggtc agtatggatc tcactggttg 7680 cttgcgtaag cttcgacagt gtgatcgact tcttgagagg ctgggtaatg acgtttcaga 7740 agttcattta agagcgatct taattgatct tgatgagtgt tctgagtgtt tgatgctttg 7800 tgagcaggag tatatcagag acacggactg ccttatgtca tttctgttgg cgctgaaaca 7860 ctatgagatt aaatttcaca tggatatgtt gaatatgatt tatgacttta aactgaaaac 7920 gtcccaattg attcaggatg tttttagaat taaagtaatc atcagagtgt atcttgagtt 7980 gtgtgaaatt gatccacttt tggctatgac tgaggcttgt caagacattc ttgagagtgg 8040 tattttgaac atcggtttca tctcttcggc cctcgggcat gaaccgaaca tacttatcac 8100 aatattgtcg atggtcgatt ttacagtcgt cattgatgat cgaccactgg tctttatccc 8160 ttcaaaaata aggtttgttg gcgacaagtt ggggtcaggt cattttaggt ggtttgataa 8220 gtttttcttt gggagtgata tataatctgg ttaatattca aaggatgggt gatcgttttg 8280 cttgcgattc tttggatagt atagccagag atatacactc tttgtatatt ttgtttttct 8340 atacgtttct agtaggtgtt ttgttgacat tcataatgtc ttgtgttaga ggtgttatag 8400 aaatttatcg tgttaattag ggagtttttg ataatgtttc cttcctttgg ttatttactt 8460 cgtattttat aaaatccaaa aaatatatta tgctttttac atattgttct gtttagttgg 8520 tgtgaaaagt gatctaccta aattacgtgt tatacacgta gaccttggta gatctagtat 8580 ataaataaat aggc 8594 //