ID   JQ948083; SV 1; circular; genomic DNA; STD; VRL; 2748 BP.
XX
AC   JQ948083;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Chloris striate mosaic virus isolate AU-QG29-2011, complete genome.
XX
KW   .
XX
OS   Chloris striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2748
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2748
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; d9ca3709d58efec2a38e3bff828f9a1c.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2748
FT                   /organism="Chloris striate mosaic virus"
FT                   /host="Panicum sp."
FT                   /isolate="AU-QG29-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="26.57 S 152.94 E"
FT                   /collection_date="2011"
FT                   /note="genotype: CSMV-A6"
FT                   /db_xref="taxon:10820"
FT   CDS             1..342
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FG53"
FT                   /db_xref="UniProtKB/TrEMBL:J7FG53"
FT                   /protein_id="AFN80705.1"
FT                   /translation="MQYQGYEQLSRSGSVEQTSPGASFAFPVKVTALVCFAAIVGACIL
FT                   VFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAATSTPVCVPCAPQVQASV
FT                   DLPSVSRVS"
FT   CDS             339..1064
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FGJ2"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGJ2"
FT                   /protein_id="AFN80706.1"
FT                   /translation="MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDF
FT                   VWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSR
FT                   PVCWLVYDAAPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNG
FT                   SRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANG
FT                   AVFVARGNVRVYFKSVGNQ"
FT   CDS             complement(join(1262..1663,1750..2436))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FHM8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHM8"
FT                   /protein_id="AFN80708.1"
FT                   /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY
FT                   PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEAKFRTTSPKYFD
FT                   LNEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT                   ATTRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW
FT                   LQQELYTVRSPGVRRRSLYICGPIRTGKTTWARSLGTHHYWQHSVNFLEEWNCHAKFNI
FT                   IDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILANEDEDWLQSMSTQQV
FT                   DWFHGNAVVYYLPPGETFIPTE"
FT   CDS             complement(1549..2436)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FGJ4"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGJ4"
FT                   /protein_id="AFN80707.1"
FT                   /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY
FT                   PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEAKFRTTSPKYFD
FT                   LNEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT                   ATTRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW
FT                   LQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSADQFVPERPL
FT                   GPEVLELITTGSTQ"
XX
SQ   Sequence 2748 BP; 580 A; 715 C; 756 G; 697 T; 0 other;
     atgcagtacc aggggtacga gcagctcagt agatctggat ccgtggagca aaccagcccc        60
     ggtgctagct ttgcttttcc ggtgaaggtg acagccctcg tctgtttcgc agcgattgtt       120
     ggagcctgta ttcttgtatt cttgtacaag acgtgcattg cggactgcat aacgcagtac       180
     cggcttacgg actacggctg tcacacttcg gctggtttcg gaggtgcgtt acccgtgacc       240
     tctgcgcaag ctagtgctgc taccagcacc cctgtgtgtg ttccctgtgc tcctcaggta       300
     caggcgtccg tggatctacc ctctgtcagt agggtatcat gagccctgct agctcatgga       360
     agaggaagag gccctcttct tcctccgctc aggcgtcgaa gaagcgccgc gtctataggc       420
     ctgctgtttc acgttctctc gctcggcgag aacctctgca ggtgcaagac tttgtctggg       480
     atactgacgt tgccttcaac aggggaggag gttgttacct tctcaccagc tatgctcgag       540
     gctctgccga gaatcagcgg aaaaccgctg agaccatcac gtacaaggtg gcagttaacc       600
     tggggtgtgc tatctccggg acgatgcagc aatattgcat cagttcccga ccggtctgct       660
     ggcttgtcta cgacgcggcc ccaacaggct ctgctgtaac cccgaaggac atcttcgggt       720
     accctgaagg attagttaac tggcctacta cttggaaggt ggccagagcg gtgtcccacc       780
     gcttcatagt gaagcgccga tgggtcttca ccatggagtc caacggctcg cggttcgacc       840
     gtgactacac caacctcccg gctgctatac cgcagtccct tcccgttctg aacaagttcg       900
     cgaagcagtt gggcgtgcgg acggagtgga agaacgctga aggcggagac ttcggcgaca       960
     taaagagcgg agctctttac ctagtcatgg ctccggctaa cggagctgtc tttgtagctc      1020
     gcggcaatgt ccgcgtgtat tttaagtccg ttgggaatca gtgattcccg gacttcattt      1080
     tcaataaact gtgagagttt gcttgccaaa caacataatt tcattcataa cgatggcgca      1140
     gtatgcgcaa tacatttaaa agaagggcgg acaggacaaa ggcgggcggc taagggaagc      1200
     cgcaaggggc aacaccacat cccaagaatg agttttcgaa tatgcagccg ccggcttcac      1260
     gctattccgt aggaatgaag gtttcccccg gaggtagata atacaccacg gcattgccgt      1320
     gaaaccagtc gacctgttgg gtcgacatcg actgcagcca gtcttcgtcc tcgtttgcga      1380
     ggataataca cgggatcccg ttggggattc ttttcttctt cccgtacttg gggtttaccg      1440
     tcaggtcgta ctggctgccg acgagtccct tccaacaagg gacgaacttg aacgggatgt      1500
     catcaatgat gttgaacttg gcgtggcagt tccattcctc caggaagttc actgagtgct      1560
     gccagtagtg atgagttcca agacttctgg cccaagtggt ctttccggta cgaattggtc      1620
     cgcagatgta caggcttcgt ctccggactc cagggctcct gacctggtta ggtcagacat      1680
     ccattggagg tcaatacgtg cttgttcctc cgaaatacct gcatgcagac tgagggcttg      1740
     aggacttaca gtatacagct cctgctggag ccattcacct atgaccggat ggtcagacat      1800
     gtctctggac gcgtatggcg cggagtaggt ttgaggaggg tcagggaaca gggcatttgc      1860
     actgtactgg aattgctgta ggcgtaccgc ccattcgaaa gggaaactct ttcgaaccat      1920
     gctcagatat tcgtccctgg ttgtggcatt tgccatgatt tgtttcatgg tcttgtccct      1980
     agaggccgac tgggtcggac tcctgttgac cttaggtttc aggaattttc caaattccca      2040
     gctactctca ggatgtttca tacagtattt cagagtactg gctggctgcc ttgcagcttg      2100
     aatgtttgga tgaaattcat tgaggtcaaa gtatttggga gaggtggttc tgaattttgc      2160
     ttcgagctgg acgaaggcat gtaagtgggg ctcaccgtca gcatggaatt ccctggaaat      2220
     gtaaatataa ttacatttct tatttttaag gcggtcagca attttctgac cagcctcttc      2280
     gggactgata ggacacctgg gataggtgag gaagacatgt ttagtcctca gggagaaggc      2340
     cttctcccca ggcgtcactt gccctccgcg agatggcact tgtacggaag tgccacttcc      2400
     ctccccctcg ctctcactga caggcaggga cgacattata aaagacgacg tggcttgatg      2460
     gacagccgta ggatgtgttc tgagatgtgg actctgatga aaactatctc taataccagt      2520
     tgctcacctg ccgagtgccc tcttcggctt ttataggcct aacaggccgg ctctttgcat      2580
     gggcgggggg gcaaccataa tattaccgcc cccccggccc atgcgagggc ccatgctcaa      2640
     cgggtcccga gcggcttttg gctttcaccc gggattgtcc cccgcggtgc gatctgccct      2700
     gccatctttg gcgtctttat aaagacgttc tcagaccttt ggtttcca                   2748
//