ID JQ782213; SV 1; linear; genomic RNA; STD; VRL; 4279 BP. XX AC JQ782213; XX DT 06-JAN-2013 (Rel. 115, Created) DT 17-MAR-2013 (Rel. 116, Last updated, Version 2) XX DE Lucerne transient streak virus isolate LTSV-Can, complete genome. XX KW . XX OS Lucerne transient streak virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4279 RX DOI; 10.1007/s00705-012-1519-0. RX PUBMED; 23111554. RA Somera M., Truve E.; RT "The genome organization of lucerne transient streak and turnip rosette RT sobemoviruses revisited"; RL Arch. Virol. 158(3):673-678(2013). XX RN [2] RP 1-4279 RA Somera M.; RT ; RL Submitted (15-MAR-2012) to the INSDC. RL Gene Technology, Tallinn University of Technology, Akadeemia tee 15, RL Tallinn, Harjumaa 19086, Estonia XX DR MD5; d46ec04948410d33ae303d20359d7428. DR EuropePMC; PMC3791421; 23830075. XX FH Key Location/Qualifiers FH FT source 1..4279 FT /organism="Lucerne transient streak virus" FT /host="Medicago sativa" FT /lab_host="Trigonella foenum-graecum" FT /isolate="LTSV-Can" FT /mol_type="genomic RNA" FT /country="Canada" FT /collected_by="Y.C. Paliwal" FT /db_xref="taxon:12470" FT /culture_collection="ATCC:PV-454" FT 5'UTR 1..77 FT CDS 78..440 FT /codon_start=1 FT /product="P1" FT /note="putative RNA silencing suppressor; ORF1" FT /db_xref="UniProtKB/TrEMBL:L0MLI2" FT /protein_id="AGB93805.1" FT /translation="MPSVIVECYTTDSHRDIPLFSQKIWFDNVDELTSDYVRVYRAVRD FT YSKVDYIEVELRCNFCHYYNSRGQIVQRYLGCKDVEIRNISLPDNDPYTYTVYSVDCAI FT CRKIPTESEDESDSSF" FT CDS join(534..1856,1856..3481) FT /codon_start=1 FT /ribosomal_slippage FT /product="polyprotein P2a2b" FT /note="ORF2a2b; contains N-terminal transmembrane anchor, FT serine protease, VPg and RdRp" FT /db_xref="GOA:L0MN56" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0MN56" FT /protein_id="AGB93808.1" FT /translation="MTLKLWEALKVLVVVSSSSIAASLLLTSQVAAGGLDPMLQSPLAL FT CVISMLVLIVRYAWQNMLLNSVEVRDETPPGMFINLVGEPKLIPEKGIVMDGVGEDGKV FT CKVIVNPQWWRFLPGSAISKNGEDEAAVLDSVYSSVLTGTEPASLVLLKSGSQTVGFGA FT RVSYEGCSDYLLTAYHVIEPHEKLDLCKRGKVIPDLDLATTYDCEDKFAEFAMIKVPSN FT YWSRLGVGVAKLSALSKKSTVSLYGGTSSTGLTCSSGFAYKGKSGYAIVHEASTTKGWS FT GTPLYVGNNIVGVHTGCGKAGETNRGTNVRVLLDLSSGYESDFSEISYGEIDLDNFRLR FT PNRQEYLPVTIKGKGRYLLGDTDFVAMTEARVKRIDDWEALKDAEGPGRVKWSDWADEE FT TSWIGRKMNNIYKAGVETIDLWKGTDEPVESETTSQLLRHLNLPRGGHTGRCCTALINL FT AEYRWEQPIPISSRGMPLSEVGRSNCKFREASGKATGDAVIAAGEIFPELKQYSWPKRG FT SEAERGSLLFQAGRFRPTSPPANLAESVRKLVSKYPATTVYKVLRGAEWSKEEIAKEAR FT RIGETEVNPKASPGVPLSVLGQSNAEVLSRHGDLVYIAVAERLIALSEADLEAHPKPSD FT LVRLGLCDPVRLFVKNEPHPANKVREGRFRLISSVSLVDQLVERLLFGPQNKAEIALWQ FT SVPSKPGMGLSQKWQFEALWKDLQIKHASAPAAEADISGFDWSVQKWELEADVCMRIER FT GNFPARMRKAALNRFKCFANAVFQLSNGELIEQGLPGLMKSGSYCTSSTNSRIRCLMAE FT IIQAPWCIAMGDDSVEGYVEGARELYGELGHTCKDYIPCAAEGEILKEVNFCSHSIAAD FT RCYLQSWAKTLFRYLEHPDDFEELAVELQGCPQWPRIYKYLRRIGRVSDKIPEPREENG FT REDEKSKQKEEEEQQHTEEDYGTQQAASYCSEGHDPSRYFGGGEEVFPCNPL" FT CDS 534..2345 FT /codon_start=1 FT /product="polyprotein P2a" FT /note="ORF2a; contains N-terminal transmembrane anchor, FT serine protease, VPg, C-terminal proteins" FT /db_xref="GOA:L0MPM2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0MPM2" FT /protein_id="AGB93806.1" FT /translation="MTLKLWEALKVLVVVSSSSIAASLLLTSQVAAGGLDPMLQSPLAL FT CVISMLVLIVRYAWQNMLLNSVEVRDETPPGMFINLVGEPKLIPEKGIVMDGVGEDGKV FT CKVIVNPQWWRFLPGSAISKNGEDEAAVLDSVYSSVLTGTEPASLVLLKSGSQTVGFGA FT RVSYEGCSDYLLTAYHVIEPHEKLDLCKRGKVIPDLDLATTYDCEDKFAEFAMIKVPSN FT YWSRLGVGVAKLSALSKKSTVSLYGGTSSTGLTCSSGFAYKGKSGYAIVHEASTTKGWS FT GTPLYVGNNIVGVHTGCGKAGETNRGTNVRVLLDLSSGYESDFSEISYGEIDLDNFRLR FT PNRQEYLPVTIKGKGRYLLGDTDFVAMTEARVKRIDDWEALKDAEGPGRVKWSDWADEE FT TSWIGRKMNNIYKAGVETIDLWKGTDEPVESETTSQLLRHLNCQGAGTPEGVAPPSSTL FT QSTDGSNPSLSPHGVCLFPKLEDRIVNLEKLVEKLLETLSSQQVKSSQSSNSTAGPSEV FT VRQKEDPSSSKPDGSDRPAPPPTSPSQSESSSQNTQPQQSTKSSGGQSGAKKKSQRRRG FT ESEKQKSTQKPPQASRSPSWVKATPKS" FT CDS 3318..4154 FT /codon_start=1 FT /product="coat protein" FT /note="CP; ORF3" FT /db_xref="GOA:L0MPW1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:L0MPW1" FT /protein_id="AGB93807.1" FT /translation="MVAKTRRANRKKKRNNNTQRRTTEPNRQLATARRVTIPAATSVVV FT RKSSPVIRSDRKGIQVCNTEFIRSFDLNAGFTVGSLPCTPGTMPWLSRMAASWGRWKWN FT SLRFTYIPAAPSSTQGTVAMGFLYDALDSLPSNLASMSSLDGFTTGAVWSGCEGSAYLA FT KPSMRDIPGAISTCLDIDPDWRQKRWRYITALELAALSKPDFNIYAPARLAIAAANSSI FT NIASVGTLYATYEVELFDPISAELNLPTPAVVTQAKEDTTKHTSNTEEEDGKAKPH" FT 3'UTR 4155..4279 XX SQ Sequence 4279 BP; 1137 A; 957 C; 1141 G; 1044 T; 0 other; acaaataatg tgaagaaaga actgaagttt aagcaatttg tgtattcgta cttttgtgct 60 taaacttcca atcctgtatg ccaagcgtaa tagttgagtg ttacacaacc gactcccatc 120 gagacatccc cttgttctcc cagaagattt ggttcgacaa cgttgacgaa ttaacgtccg 180 actacgtccg agtctacagg gcagttagag actactccaa ggttgactac atcgaggttg 240 agttgcgctg taacttttgt cactattaca acagtagggg gcagatcgta caacgatatc 300 ttggttgtaa agacgtggag attagaaaca tctccttacc tgacaacgac ccatacacct 360 acacggtata ttcagttgat tgcgcgattt gccggaagat tccaacggag tctgaggacg 420 aatcggacag ttctttctaa ccctggaaac ccgaactaag cgtagaatta cacgctctcg 480 cagtttcatt aactataagt tgtttaactg tttcacaagt attacagtac aagatgactt 540 tgaaactctg ggaagctctc aaggttcttg tggtagtgtc gagcagctcg atagctgcga 600 gtctactact tacatcccag gtggcagcag gaggtttaga cccgatgttg caatccccat 660 tggctctgtg cgtcatatcg atgctggtgc tgatcgtgcg atacgcctgg cagaacatgc 720 tgctaaactc agtagaggtt agggatgaaa ctccccccgg catgttcatc aatcttgtag 780 gtgaacctaa gttgatccct gaaaagggaa tagttatgga tggcgttggt gaggacggca 840 aggtgtgtaa agtaatagtc aatcctcaat ggtggcgttt tcttcccggt tctgcgatat 900 ctaagaatgg ggaagacgaa gctgcggttt tggatagtgt atattctagc gtccttactg 960 gtacagagcc agcttctttg gttttgctta aatcaggcag ccaaactgtt ggttttggag 1020 cgcgtgttag ttatgagggt tgctcagatt atctattgac ggcataccat gtgatcgagc 1080 cacatgagaa gttggacctg tgtaaacggg ggaaggtcat tccagatctg gatttggcca 1140 ccacttacga ttgtgaggat aaattcgcag aatttgctat gattaaggtg ccgagtaact 1200 actggtctag attgggcgtg ggggttgcaa aactctctgc ccttagcaag aagtcaacag 1260 tttcactata tggtggtacg agctccactg gtctcacttg ctcttcggga tttgcttata 1320 aaggcaagtc tggttatgcc atcgttcacg aggcatctac caccaagggc tggagcggga 1380 cccctttata tgttggcaac aacattgttg gagttcacac tggatgtggg aaggccggcg 1440 aaaccaaccg cggaactaac gtccgggttt tgcttgatct tagctctggg tatgagtctg 1500 atttttccga gatctcctac ggggaaattg atctggataa ttttagactc agacctaacc 1560 gccaagagta cctgccagtg actatcaaag gaaaaggaag atatttgtta ggtgacactg 1620 acttcgttgc catgacagag gctagagtca aaagaataga tgactgggaa gccttaaaag 1680 atgctgaagg gcctggaagg gttaagtggt ctgattgggc tgatgaggaa accagctgga 1740 taggaaggaa aatgaataac atctacaaag ctggtgttga gactatagac ttgtggaaag 1800 gcacggacga acccgttgag tctgagacta catcgcaact gttgaggcat ttaaactgcc 1860 aaggggcggg cacaccggaa ggtgttgcac cgccctcatc aaccttgcag agtaccgatg 1920 ggagcaaccc atccctatct cctcacgggg tatgcctctt tccgaagttg gaagatcgaa 1980 ttgtaaattt agagaagcta gtggaaaagc tactggagac gctgtcatcg cagcaggtga 2040 aatcttccca gagctcaaac agtacagctg gcccaagcga ggtagtgagg cagaaagagg 2100 atccctcctc ttccaagccg gacggttccg accgaccagc ccccccgcca acctcgccga 2160 gtcagtcaga aagctcgtct caaaataccc agccacaaca gtctacaaag tcctccgggg 2220 ggcagagtgg agcaaagaag aaatcgcaaa ggaggcgagg agaatcggag aaacagaagt 2280 caacccaaaa gcctccccag gcgtcccgct ctccgtcctg ggtcaaagca acgccgaagt 2340 cttgagtagg cacggcgatc ttgtgtacat agcagtagca gaaaggctaa tagcgctgtc 2400 cgaggccgac ttggaagccc atccgaagcc cagcgattta gttcgtttgg gtctttgtga 2460 tcctgtgaga ttgtttgtaa agaatgagcc tcaccctgcc aataaggtgc gggaagggcg 2520 atttagactg atctcatcgg tatcgctggt tgatcaacta gttgaaaggc tgctattcgg 2580 gccccaaaac aaggcagaga tcgctttgtg gcagtcggtg ccttcaaaac ctggtatggg 2640 attgtcacag aagtggcagt tcgaggcgct gtggaaagat ttgcaaatca aacacgccag 2700 tgcccccgct gctgaggcgg atatatcggg ttttgattgg tctgtgcaga aatgggagtt 2760 agaagctgat gtgtgcatga gaatagaaag gggaaacttc cctgcaagaa tgaggaaagc 2820 cgccttgaac cgcttcaagt gtttcgccaa tgctgtgttc cagctaagca acggcgagtt 2880 aatagagcaa ggcttaccgg gtctaatgaa gtctggtagt tattgtacct cgagtactaa 2940 cagccggata aggtgcctta tggctgaaat aatacaagcc ccgtggtgca tcgccatggg 3000 agacgactcg gtagaaggat atgttgaggg ggcccgtgag ctctacggag aactgggtca 3060 cacatgtaaa gattacatcc cgtgtgctgc tgagggagag atcctcaagg aagtgaactt 3120 ttgctcacac agcatagctg cggatcgttg ctatctccaa tcctgggcta aaaccttatt 3180 tagatatctg gaacaccctg acgactttga ggagttggca gtggaattgc agggctgtcc 3240 gcagtggccg cggatataca agtacttacg tcggattgga agagtctccg acaaaattcc 3300 cgaaccaaga gaagaaaatg gtcgcgaaga cgagaagagc aaacagaaag aagaagagga 3360 acaacaacac acagaggagg actacggaac ccaacaggca gctagctact gctcggaggg 3420 tcacgatccc agccgctact tcggtggtgg tgaggaagtc ttcccctgta atccgctctg 3480 atcgcaaggg tatccaggtg tgcaacactg agttcataag gtcgtttgat cttaatgcgg 3540 gctttactgt cggctcgttg ccttgtacac ctggtacgat gccatggctc tcacgcatgg 3600 cagcaagttg gggacgctgg aaatggaata gcttaagatt tacatacatt ccggccgctc 3660 catctagcac gcagggaact gtagcaatgg gattcctgta tgatgcatta gacagtcttc 3720 catctaattt ggcatctatg agctctctcg atgggttcac caccggggcc gtttggtctg 3780 ggtgtgaagg atctgcttat ttagctaaac catcgatgag agacatccct ggcgccatat 3840 caacttgttt agacattgat cctgactggc gtcagaagag atggaggtat ataacagctt 3900 tggagttggc agcgttgtct aaaccagatt tcaatatcta cgctccagcg cggctagcca 3960 tagccgcagc taacagctcc ataaacatag ctagtgtggg tactctttat gccacttatg 4020 aggttgaatt attcgaccca ataagcgctg aattgaacct ccccactccg gctgtagtaa 4080 ctcaggccaa agaggatact acgaagcaca cctccaatac ggaggaagag gacgggaaag 4140 ctaaacccca ttaagtagcc gtatgatggt tttcgttaat ccattagccg cgaggaggtc 4200 attgaacctt gtggttttct catttaaatg ctggcggact tagcaccgcc cccttatccc 4260 gtcgggtgtg acggggtgt 4279 //