ID JQ314457; SV 1; linear; genomic RNA; STD; VRL; 6409 BP. XX AC JQ314457; XX DT 26-APR-2012 (Rel. 112, Created) DT 30-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Pepino mosaic virus strain EU_CAHN8, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RC Publication Status: Online-Only RP 1-6409 RX PUBMED; 22623984. RA Li R., Gao S., Hernandez A.G., Wechter W.P., Fei Z., Ling K.S.; RT "Deep Sequencing of Small RNAs in Tomato for Virus and Viroid RT Identification and Strain Differentiation"; RL PLoS One 7(5):E37127-E37127(2012). XX RN [2] RP 1-6409 RA Li R., Gao S., Hernandez A.G., Wechter W.P., Fei Z., Ling K.-S.; RT ; RL Submitted (22-DEC-2011) to the INSDC. RL Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah RL Highway, Charleston, SC 29414, USA XX DR MD5; 40f20af85a0b581aea2eb6b237d2ad67. DR EuropePMC; PMC3356388; 22623984. DR EuropePMC; PMC5485527; 28621718. XX FH Key Location/Qualifiers FH FT source 1..6409 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum (tomato)" FT /strain="EU_CAHN8" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="24-Sep-2009" FT /note="genotype: EU" FT /db_xref="taxon:112229" FT 5'UTR 1..84 FT gene 85..4404 FT /gene="rep" FT CDS 85..4404 FT /codon_start=1 FT /gene="rep" FT /product="replicase" FT /note="RNA replication" FT /db_xref="GOA:I1V2A4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I1V2A4" FT /protein_id="AFI25314.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT VVNYFSYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVITTHTAIGQAISNAAATYKERKQLTQLVKKGTISLADFEQRAPEIT FT YTEFEPETRPQVDCVTNYNNAVKNLGLSELDEQPQCSSSNSHLPCNEISLAMTDDDNAA FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENDVQQ FT TTHNYHAVSDTAQSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS FT EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA FT LQKCKVPILVPSQMKKSAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPTEPEA FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNQFVKQGWNFNRTAQTNDFTAF FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNQLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT gene 4430..5134 FT /gene="tgbp1" FT CDS 4430..5134 FT /codon_start=1 FT /gene="tgbp1" FT /product="triple gene block protein 1" FT /db_xref="GOA:I1V2A5" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I1V2A5" FT /protein_id="AFI25315.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTENI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK FT LTIGELNAWSNS" FT gene 5115..5486 FT /gene="tgbp2" FT CDS 5115..5486 FT /codon_start=1 FT /gene="tgbp2" FT /product="triple gene block protein 2" FT /db_xref="GOA:I1V2A6" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:I1V2A6" FT /protein_id="AFI25316.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQPSYFHSGNKLNVLILIFILTLGIILTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT gene 5338..5586 FT /gene="tgbp3" FT CDS 5338..5586 FT /codon_start=1 FT /gene="tgbp3" FT /product="triple gene block protein 3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:I1V2A7" FT /protein_id="AFI25317.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKI" FT CDS 5632..6345 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q8JJF2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8JJF2" FT /protein_id="AFI25318.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6346..6409 XX SQ Sequence 6409 BP; 2057 A; 1479 C; 1174 G; 1699 T; 0 other; gaaaacaaaa cataaacaaa tatacaaagt taaactaaca caacataacc acgtggaaaa 60 acagcgaaag cactttacca cattatgtct cgtgtcagaa atactttgga aaagatcaga 120 gacccacaag tacagtccag catttgtgaa gctgcctatc aacatgttag acctgtactt 180 aaggaatctc taatcaattg tccttacgcg cttaatgatt atgaagcaga cacccttgag 240 aatcttggtg tcacaattaa cccccatgca atccaaacac acacacatgc cgcagccaaa 300 gtagtcgaaa atcgtatgct tgaaattgtt ggacatcact tgcctaaaga tgaaaaagta 360 actttcatct tcctcaaacg tagcaagctg cgttacatga gaagagctgc tgtgcataaa 420 gatgtctttg tcaatcataa cattgagcca aaagacttct tcaggtatga cgaagagtct 480 acatcaacca gcttttccgt taatacgaga atcgcataca tttcagattc tctacacttt 540 atggaacctg ctgatgtgac tcacttgttt gaccgttgcc aaaaccttaa aacattgatg 600 gcaactgttg tactacctgt ggaagccata cacagacaga catctctatt ccctgcgatt 660 tactccatta actacaatga agaaggcttt gagtatatcc caggatcaca cggtggtggg 720 gcatatttcc acaaatatga aaccctagaa tggctcaaat actctagatt cattggacat 780 gatccattga ctggtttaaa atacaccatt acgattcaaa tggtggagag tcttggtgcc 840 aaccaccttt tcctcttcca aagaggaaac tttgagacgc cgctatacag gacgtttcaa 900 aagaatagtt ttgtgacatt cccaaatata ttccatcccc gacacgtcaa tgccacaaaa 960 cctatgccta gatcaagggc catacagctg tacttatatg tgaaatcagt aaataaagtt 1020 acgcaaagag atatatttgc caaggttaga caactgattt ccactgctga gctagaattg 1080 tatgaccctg atgaactcac gcatgttgta aattatttct catatgtgtc acaactgtca 1140 tctatcaatg attatgacaa catgctcaaa tccagtttct tcaaaaaact ggttgcaccc 1200 atgcaacacg actggaggtg catgattgaa ttcttccggg gaaagagtga cttcaatcaa 1260 ctgctcacag ctcttcaatg gaaagatttt tcctatacta ttaagactga agagcttgta 1320 attactacac acactgctat aggacaagca ataagcaatg cagctgccac atataaagaa 1380 agaaagcagc tgactcaatt agtcaaaaaa ggcacaatat ccttagcaga ttttgaacag 1440 agagcacctg aaataactta cactgagttt gagcctgaaa ctaggcccca agtggactgc 1500 gttaccaatt ataataatgc agttaaaaat ttaggtctct ctgaacttga tgaacagccc 1560 caatgttcat cttctaacag tcatctaccc tgcaatgaaa tatccttagc aatgactgat 1620 gacgacaatg ctgcggccat tcatgaaatt gagtctctat tgtctgaacc gataatagct 1680 cctcaactcc cagcattgcc acacaagaca tgggccagtt atgcttcaga cacttcatcc 1740 atgaagaacc gtgagattga gaacataatt gctgaacttg aaatctcacg gaaggaaaat 1800 gatgtgcagc aaactaccca taattaccat gcagtttctg acacagctca gagctccgga 1860 gatctcccat ggaaagcatg gattccactt ctgaatgcac acggcttcaa gggagaccaa 1920 ctccaataca gtccggatgg caaagtgatt cagccaatcc aggacatcaa caacaaaaca 1980 ccaagatctg agtacccatc cagcattcct gcagatcttg tgaatacact gcgaaacatt 2040 aaaagagcag tgtatgccat tcctattagc catcgaagag caagtgctta cagctctgat 2100 atcaaaaaca ataggaccgg caaattactc tgttcccaat caaaagaatg gaaggaaagt 2160 tttgctttca aaatgcaaca tgaagacatc gttaaatctg gagtagtcat ccatggctgt 2220 ggcggctcgg gaaaatcaca agcattacaa aactttctca gaactcttgg cgactctaat 2280 gactgctgca cagtggttgt gccaactgtt gaactcagaa atgattgggt gaacaaattg 2340 tgtaagctac ccatggaaca cattaaaaca tttgaaaaag caatgattca accaggattc 2400 ccagttgtta tctttgatga ctacactaaa ttgccacctg gttacattga agcctatttg 2460 ttccaccatg ccaacactga acttttcatt cttactggag actcgcggca aagcgtatat 2520 catgagtcca acaatgaagc atacattgcc tcattagatg aagccgtcgc ttattatgct 2580 aactactgtg gattttacct aaatgctaca cacagaaatg ttcgcagttt ggccaataag 2640 ctaggtgttt acagtgagaa agaaggtcac ctcaaaatta cctttgcctc aaatgctcta 2700 caaaagtgca aagtgccaat tttggtgccc tctcaaatga agaagagtgc tatgcaagac 2760 atagggcaca aagccatgac ctacgctggg tgtcaagggc ttactgcacc gagagtccaa 2820 attttgcttg acaaccacac acaacactgc tcagacaggg tgctgtacac ttgtctctcc 2880 agagctgtgg attccatcca ctttatcaat acaggcccaa acaattctga attttgggac 2940 aagcttgagg caacaccata cctcaaagca tttattgata cttacagaga tgagaaaaca 3000 gaaatgctca attctaagcc tgctgatgac agtcccactg agcctgaagc tccattgact 3060 cactttccag tgtcaaacgg caataacttg gaaaagttag cttcagcgct tcctgaaaaa 3120 tttgcaagag agttatatga taaacaccat ggatattcta atacaatcca aactgaaaat 3180 ccagtggtgc aacttttcca gcatcaacaa gccaaagatg aaacactttt ctgggcaaca 3240 atagaagcta gactttctat tacaactccg gaagccaact tgcgagaatt tgtgctaaag 3300 aaagatgttg gagatatctt gtttttcaat taccacaatg tcatgtgctt acctgccgac 3360 ccagtggatt tcgagccaag aacatgggaa atatgtgctg ctgaagttaa aaatacatac 3420 ttagccaaac caatggctaa cttgatcaat gctgctagcc gacaatctcc tgatttcgac 3480 gctaacaaaa tttccctgtt cctaaaatct caatgggtca agaaagtgga aaaattaggt 3540 gctgtcaagt caaagcctgg ccagaccatt gcagctttca tgcaacaaac agtgatgttg 3600 tatgggacca tggccagata cctcagaaag atgagacaaa gatttcaacc aaaacatatt 3660 ttcatcaatt gtgaaacaac aactgatgat ctgaaccaat ttgttaaaca aggttggaat 3720 tttaacagaa cagctcagac aaatgatttc acagcttttg accaatcaca agatggtgca 3780 atgcttcaat ttgaagtcat gaaggcaaaa ttcttcaata tccctgccga catcattgaa 3840 ggatacatca acataaaatt gaacgccaaa attttccttg gcacattgtc cattatgagg 3900 ttgtctggtg aaggtccaac ttttgatgcc aacacagaat gttcaatagc atatactgct 3960 acaagatacc atcttgattc tacagtcaag caggtttatg ctggagatga catggcatta 4020 gatggagttg tccaagaaaa accctctttt aaaaaactac agaaccagct taaactcacc 4080 tcaaagacac tatttccaaa acaggttaaa ggtgattatg ctgaattctg tggttggact 4140 ttcactcctg gtggtatcat taaaaaccct ttgaaaatgc atgcttccat tatgttgcaa 4200 gaggcaatcg gcaatttaca cactgctgcc agatcatatg ccattgacat gaagcattca 4260 taccaaatgg gtgatgagct gcacaattac ttaacaccag atgaagctga acaacacttc 4320 cttgctgttc ggaagttgca caagttacac caaggagaag caatgagact tggtgaaaag 4380 agccctccaa aagcaacaca ttgaggggtt aagtttttcc cagttcgaaa tggaaagatc 4440 aactctgatt aatttacttc aattgcacca cttcgagcca aaactcagtg ttgaaggaat 4500 catagttgta cacggaatcg caggcactgg gaaaaccact ttacttagga ctttattttc 4560 tgcttaccct agcttagtta taggttcacc taggccttgc tatttagata aacaaaacaa 4620 aatttcacaa gtttgcttat cttgctttcc caatacccat tgtgatattg tcgatgagta 4680 tcatttgcta gaaagttttc cagaaccaaa attggctatc tttggtgacc cctgtcaatg 4740 cacatacatt gagagactta gagtcccaca ctacacttca ttcagaactc atagatttgg 4800 aaagtcaact gctgagattt tgaacaaact gtttgacctt aatatagtct cagttaagaa 4860 agaagacgac atagttgaat tctttaaccc ttttgaagtt gaccccactg agaatatctc 4920 tgcctctgaa gaagaagtcc tggactttgt ttctgaccaa gtggtgacca ctagctcaga 4980 ggaactagca ggacttgagt ttgcagaaac aactttctac tgcacaacat tagccgcagc 5040 tgttgctgaa aatcccgcta agactttcat ctctctgact agacacaccc acaaactcac 5100 cattggggaa ctaaatgcct ggtctaactc ctagagctga cctcactgac acatacaaaa 5160 tcattgccat tgctttcttg ttgtcagctt gcatttactt ccaaaatagc cactaccaac 5220 ctgttgctgg agacaacttg caccgtttgc cttttggtgg ccaatatcaa gacggcacca 5280 aaaagatatc ttattttcca caacagccgt catactttca ttctggaaac aaattaaatg 5340 tcctcatact tatcttcatt ctcacattgg gtattatcct caccaataaa tttagtttta 5400 gctttagtcg tactactcac cagcattctt gctataacac acattcagca accaacaata 5460 cacaaccatt gtcaggtcat cattgacggt gctgcaatag tcataacaaa ttgtgagaac 5520 acaccagaag tgcttaaagc gatcaacttc tccccttgga acgggttaag ttttcctaaa 5580 atttgaaaat taatattgag tgttcacaaa aatcaacttc aataaacaat catgcctgac 5640 acaacacctg ttgctgccac ttcaagtgca ccacccacag ccaaagatgc tggtgccaaa 5700 gctccttctg acttctcaaa tcccaataca gctcctagtc tcagtgattt gaagaaagtc 5760 aagtatgtct ccaccgtgac ctccgtggcc acaccagctg aaattgaagc cctaggcaaa 5820 atcttcaccg ctatgggcct tgccgccaat gagactggtc cggccatgtg ggatctagct 5880 cgtgcatatg ctgatgtgca gagttctaaa tcggcacagc tgattggagc taccccttcc 5940 aaccctgcac tatcacgccg agcccttgct gctcagtttg atcgaatcaa tataaccccc 6000 aggcaatttt gcatgtactt tgccaaagtt gtttggaaca tacttctcga cagcaacatt 6060 ccaccagcaa attgggccaa acttggttac caagaagata caaaatttgc tgcatttgac 6120 ttcttcgatg gagtcaccaa ccctgccagc ctgcagcctg ctgatggtct tatcaggcag 6180 ccaaatgaga aagaactagc tgctcactcc gtagctaagt acggcgcctt ggctaggcaa 6240 aagatctcca caggtaatta tattaccaca cttggagaag tcacacgtgg acacatggga 6300 ggagctaaca ccatgtacgc gatagacgca ccccctgaac tttaaacact cgaaacttaa 6360 tcagagtggg gttttctaca gtttgtttac ctaattattt ctttgaaat 6409 //