ID JQ308181; SV 1; linear; genomic RNA; STD; VRL; 6495 BP. XX AC JQ308181; XX DT 08-AUG-2012 (Rel. 113, Created) DT 05-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Apple stem grooving virus isolate ASGV-CHN, complete genome. XX KW . XX OS Apple stem grooving virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6495 RX DOI; 10.1007/s11262-012-0799-5. RX PUBMED; 22864549. RA Zhao L., Hao X., Liu P., Wu Y.; RT "Complete sequence of an Apple stem grooving virus (ASGV) isolate from RT China"; RL Virus Genes 45(3):596-599(2012). XX RN [2] RP 1-6495 RA Zhao L.; RT ; RL Submitted (20-DEC-2011) to the INSDC. RL College of Plant Protection, Northwest A&F University, Yangling, Shaanxi RL 712100, China XX DR MD5; 11b782cc79b1b2d285d41328dbc5a8c5. DR EuropePMC; PMC4118050; 24998458. XX FH Key Location/Qualifiers FH FT source 1..6495 FT /organism="Apple stem grooving virus" FT /host="apple" FT /isolate="ASGV-CHN" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Lei Zhao" FT /collection_date="10-May-2011" FT /PCR_primers="fwd_name: asgvf1, fwd_seq: FT gaaatcgcaatcaataaactcc, rev_name: asgvr1, rev_seq: FT tttagagggcataaagacg" FT /PCR_primers="fwd_name: asgvf2, fwd_seq: FT tcattgctgctagtttctttga, rev_name: asgvr2, rev_seq: FT ttcttttgacacttggtgtgta" FT /PCR_primers="fwd_name: asgvf3, fwd_seq: FT gcagaaccgtggtaactc, rev_name: asgvr3, rev_seq: FT ttgcacccgttcttttccat" FT /PCR_primers="fwd_name: asgvf4, fwd_seq: FT tctgatgatttgtttataatgcc, rev_name: asgvr4, rev_seq: FT gcttcggagacttgataattcca" FT /PCR_primers="fwd_name: asgvf5, fwd_seq: FT cctatgttctgtggatggta, rev_name: asgvr5, rev_seq: FT cagagaagaaggtaaagctc" FT /PCR_primers="fwd_name: asgvf6, fwd_seq: FT atgagtttggaagacgtgc, rev_name: asgvr6, rev_seq: FT ctaaccctccagttccaga" FT /db_xref="taxon:28347" FT CDS 36..6353 FT /codon_start=1 FT /product="241K polyprotein" FT /note="contains RNA-dependent RNA polymerase and FT NTP-binding helicase" FT /db_xref="GOA:I6PD30" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:I6PD30" FT /protein_id="AFG28408.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFRSHSHPISKMIENHLLYICAPSLLSSFKSVAFFSLRE FT SKVNSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFLSFRDRVIGLRDQCFTRN FT KFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDNFDVSILQWVKDKFCQVMPHFIATSFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVIVLDKVNFIETRFHARMFDIAQAIGVNLDLLGK FT RFDYEAESEEYFSENGYVFMPSKSNPERNWILNSGSLKIDFSRLIRARRFRLRRDFLDP FT ISKGRSPRKQLFLESMGSIESNSNVEKCGESDGTKIEGSVENDQPHGASHTPMDTEDGQ FT GFEGSLLIDLINCFEPEEVKLPRRKRKNDCVFKAISAHLGIDSQDLLNFLVNEDISDEL FT LDCIEEDKGLSHEMIEEVLITKGLSMVYTSDFREMAVLNRKYGVNGKMYCTIKGNHCEL FT SSKECFVRLLKEGGGAQMSNENLNADSLFDLGKFVHNRDRAVKLAKSMARGTTGLLSEF FT NPEFCRTVVTLSELFPENFSSAVGLRLGFAGSGKTHKVPQWINYTPSVKRMFISPRRML FT ADEVVAQLKGTSCEVHTWETALRKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVEG FT QSERFLKGKIAELSKTCLNIRCFGDPLQLRYYSAEDTNLLDKTHELDLMIKTIKHKYLF FT QGYRFGQWFQELINMPTRVDDSKFSRKFFADIWSVKTEDYGLILVAKREDKGVFAGRIP FT VATVSESQGMTISERVLICLDQNLFAGGANAAIVPITRSKVGFDFILKGNSLKEVQRMA FT QKTIWQFIIEGKTIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDLFIMPFINLAEE FT EVDPEEVTGDVIKPVEWFKCHVPVFDTDPMLAEIFDRVAAKEKREFQSMLGLSNQFLDM FT EKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKEL FT LSEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMK FT SRYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGESYYIHSGKNFF FT CLDSFVTKNADVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKVDPRKHRILFAGDDMCSLSSLK FT RRRGERSTRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGSEWQSSMSTISSRKSSQQISKSTQFHPQSFTKMQPFLNLTFSIALKDLSQISRSPP FT DPVTASSCQTSNSLTTLRLIQSGKGATSTSTCTMGSSWLELKQCCQISEAWRGESLFTM FT EPAWIQKEVTYVRTSSSLNLIAAILVSDLSTACPPLMSTWQKGLGSVWILIVHSMSRTL FT SCSLLILVWLTDALIQPDSWKPKLETQGGLHKPLVAVKHLSSMKRSKWQFWTISLHCSW FT KKVHQTCTLKKGCSEVTKLEGHALSPPKGGQIQNCREREDLGPSQLELKDLEKMSLEDV FT LQQARRHRVGVYLWKTHIDPAKELMTVPPPEGFKEGESFEGKELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYNLTTIPKEGETEEQKKTREGSSGEKTKIWRIDLSN FT VVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSRGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT CDS 4787..5749 FT /codon_start=1 FT /product="36K protein" FT /note="movement protein" FT /db_xref="GOA:I6P9B8" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I6P9B8" FT /protein_id="AFG28409.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNIKVSSRSGDGLVLSDFKLLDDTEIDSIRKRSNKYKYLHYGVILVGIKAMLPNFRG FT MEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDVNLAKRFRFRVDF FT DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSRWASQAISGCEALKFNEEIKMAI FT LDHKSPLFLEEGAPNVHIKKRMFRGDKVRRSRSISAKRGPNSELQGKRGFRSLSARIER FT FGKNEFGRRASTGEAPPGRSVSMENSHRPGEGTYDGSSP" XX SQ Sequence 6495 BP; 1970 A; 1221 C; 1498 G; 1806 T; 0 other; aaatttaaca ggcttaattt ccgcgcttta cgtccatggc tttcacttac agaaacccct 60 tagaaatcgc aatcaataaa ctccccagca agcagtctga tcaactgctt tctttgacca 120 ccgacgagat tgaaaagacc ttggaagtga ctaaccgctt cttctctttt tcaatcacac 180 cagaagatca agaactgttg accaaacatg gtttgacact tgcacctata gggttcagat 240 cacattccca cccaatatcc aaaatgatag agaatcatct cctgtatata tgtgctccga 300 gtcttttgtc ctcctttaag tcagttgcct ttttctcact cagggagagc aaagtaaata 360 gctttctcaa aatgcactca gtcttttctc acggaaaaat caaatcttta gggatgtaca 420 atgctataat tgatgggaaa gacaaatata ggtatggtga tgtagaattt ttatccttta 480 gggatagagt gattggtctt agagatcaat gcttcacacg taataaattt ccaaaagttc 540 tgttccttca tgatgagttg cacttcttaa gcccatttga catggccttt ctatttgaaa 600 caattccgga aattgataga gtagttgcaa ccacagtctt tccaatagaa cttttatttg 660 gggacaaggt ctctaaggag cccagggttt acacctacaa ggttcatggt tcttcatttt 720 cattttaccc tgatggtgtt gcctctgaat gttacgaaca gaatttggca aattctaagt 780 ggccctttac ctgcagtggc atacaatggg ccaacaggaa aataagggtg accaagctac 840 agagtctctt cgcccatcat gttttttcat ttgacagagg gagggcttgc aacgaattta 900 atcatttcga caaacctagc tgtctacttg cggaagagat gcgccttctg accaagagat 960 ttgacaaagc agttatcaac agaagcacag tttcttccct cagtacatat atggcttgcc 1020 ttaaaactgc aaatgcggct tcagccgtcg ccaaattgag acagttggag aaaagagatc 1080 tttacccaga tgaactgaac ttcgtctatt cctttgggga acatttcaaa aatttcggga 1140 tgagggataa cttcgatgtg tcgattttac aatgggtcaa agacaaattt tgccaggtca 1200 tgccccactt catcgccacc agtttctttg agccaacaga atttcatttg aacatgcgca 1260 aactgttgaa tgatttggct actaaaggaa tagaggtccc tctttctgta atcgtcctgg 1320 acaaagttaa cttcatagaa accagatttc atgccaggat gtttgacata gcacaggcta 1380 tcggggtgaa tctggattta ctgggaaaaa gatttgatta tgaagctgag agtgaagaat 1440 acttttcaga aaatggttac gtctttatgc cctctaaatc aaatccagag aggaattgga 1500 tcctaaattc tggttcgctg aaaattgact tttcgagatt gataagagct agaaggttca 1560 gattgagaag agattttcta gaccccatat ctaaaggaag gtctcccaga aagcagctct 1620 tcttggagtc aatgggaagc attgaatcaa attctaatgt tgaaaaatgt ggtgaaagcg 1680 atgggacaaa aattgagggc agtgttgaaa atgaccagcc acatggggca tcacatactc 1740 caatggatac tgaggatgga caaggtttcg aaggttcttt actaatcgat ctgatcaatt 1800 gctttgaacc agaagaagtt aagctcccaa ggaggaaaag gaaaaatgat tgtgtcttca 1860 aggctatctc tgcacacctg gggattgact ctcaagactt attaaatttt ttggtcaacg 1920 aggacatatc agacgaactg cttgactgca ttgaagaaga caaagggttg tcacacgaaa 1980 tgattgaaga ggttttaatc acaaaaggtc tctcaatggt ttacacttct gacttcagag 2040 aaatggcagt tctcaataga aagtatggag tgaatggcaa gatgtactgc acaataaaag 2100 gcaatcactg cgaattgagt tcaaaagagt gcttcgtcag attgttaaag gaaggtggtg 2160 gagcgcaaat gtcaaatgag aatctaaatg ctgactcctt gttcgacctt ggaaagtttg 2220 tgcataacag ggatagagct gtcaaactag cgaaatccat ggcgagaggc acaacaggcc 2280 tcctgagcga atttaatcca gaattttgca gaaccgtggt aactctctca gagttatttc 2340 ctgagaactt ttcttctgct gttggactaa ggcttgggtt tgcgggatct ggcaaaactc 2400 ataaggtgcc gcaatggatc aattacacac caagtgtcaa aagaatgttc ataagtccaa 2460 gaagaatgtt ggcggatgaa gttgtggctc aacttaaagg aacgtcttgt gaggtgcata 2520 catgggagac tgctttaagg aagattgacg ggacctttat ggaagtcttc gttgatgaaa 2580 ttggtctgta cccacccgga tatctcacat tgttgcaaat gtgcgctttt agaaaaattg 2640 tcgaagggca aagtgagagg tttttaaagg gcaaaattgc tgaattgtcg aaaacttgcc 2700 tgaacataag atgctttggt gacccgctac aattgaggta ctactccgct gaggacacca 2760 atcttttgga taagacacat gaacttgatt tgatgataaa gacgatcaag cataagtacc 2820 tctttcaagg gtatagattt ggtcaatggt tccaggaatt aataaatatg ccaactagag 2880 tggacgactc aaagttctct agaaagttct ttgcagacat ttggagcgtc aaaactgagg 2940 attatggact catcctcgtt gctaagaggg aagacaaagg ggtctttgcc gggagaattc 3000 cggtggccac ggtgagtgag tctcagggga tgaccataag tgaaagagtg ttgatatgcc 3060 tggatcaaaa cttatttgct ggaggagcca acgctgccat tgttcccata acgaggtcga 3120 aggttggatt tgatttcatc ttgaaaggaa actcactgaa agaagtgcaa agaatggcac 3180 agaaaacaat ctggcagttc atcattgaag gcaaaactat cccaatggaa agaatagtaa 3240 acatgaaccc tggggccagt ttttatgaga gtcctctgga cgttggaaat tcatccattc 3300 aggataaggc ctcccatgac ttgttcataa tgccgttcat aaatttggct gaggaggagg 3360 ttgaccctga ggaagttact ggggacgtga tcaaacccgt cgaatggttc aagtgccatg 3420 tgccagtttt cgacactgac ccaatgcttg cagaaatttt tgacagagtg gcagcgaagg 3480 aaaaaagaga atttcaatcc atgcttggcc tttctaacca gtttttggat atggaaaaaa 3540 acgggtgcaa gatagacata ttaccttttg ccaggcagaa tgtctttcca catcatcaat 3600 cttcagatga cgtcaccttt tgggcaggtg tccaaaaaag gataaggaaa tcgaactgga 3660 gaagagagaa atcaaaattt gaagagttcg aaagtcaagg gaaagaactg ctctctgaat 3720 ttatatcaat gctgccattt gagtttaaag tgaatatcaa agacattgag gatggagaaa 3780 agagcttttt ggaaaaacgg aagttaaagt ctgaaaaaat gtgggcaaat cattcagaaa 3840 gatctgacat agactggaag cttgaccatg cttttctctt catgaagtca cggtactgca 3900 cgaaagaagg caaaatgttt actgaagcaa aagctggaca aactttggca tgttttcagc 3960 acattgtttt gttccgattt ggccccatgt tgagagccat tgaaagtgct tttctgagaa 4020 gttgtgggga atcgtactat atacattcag gaaagaactt tttctgtcta gacagttttg 4080 tgacaaaaaa tgcagatgtt tttgacggat tttccattga atctgattac actgcttttg 4140 actcatctca ggatcatgtt atattggcct ttgagatggc actactgcag tatctgggtg 4200 tttcgaaaga atttcagcta gactatctca gattgaaatt gacccttggg tgcagacttg 4260 ggtccctggc catcatgaga ttcactggag aattttgtac attcctattc aatacatttg 4320 cgaatatgct gttcacacaa ttgaagtaca aagtagatcc aaggaaacat agaatacttt 4380 ttgctggaga cgacatgtgt tccttgagtt ctttgaaaag aagacgaggt gaaaggtcaa 4440 caaggctgct gaaaagcttt tctttgactg ctgtagaaga ggtcagaaaa ttccccatgt 4500 tttgtggatg gtatctaagc ccttatggaa ttatcaagtc tccgaagcta ctgtgggcca 4560 gaattaagat gatgagcgaa aggcagctcc taaaagaatg tgttgacaat tacctgtttg 4620 aagcaatatt tgcctacaga ttaggtgaga ggctgtacac aatcttgaaa gaagaggact 4680 ttgagtatca ttaccttgtg ataagatttt ttgtcaaaaa ttcaaagctg ctaacaggat 4740 tgagcaaaag tttgatcttt gaaattggag aaggtatcgg gtccgaatgg caatcgtcaa 4800 tgtcaaccat ttcctcaagg aagtcgagtc aacagatctc aaaatcgacg caatttcatc 4860 ctcagagctt tacaaagatg caaccttttt taaacctgac gttctcaatt gcattaaaag 4920 atttgagtca aatatcaagg tctcctccag atccggtgac ggcctcgtct tgtcagactt 4980 caaactcctt gacgacactg agattgattc aatcaggaaa aggagcaaca agtacaagta 5040 cttgcactat ggggtcatcc tggttggaat taaagcaatg ttgccaaatt tcagaggcat 5100 ggaggggaga gtcattgttt acgatggagc ctgcctggat ccagaaagag gtcacatatg 5160 ttcgtacctc ttcaagtttg aatctgattg ctgctatttt ggtctcagac ctgagcactg 5220 cctgtccacc actgatgtca acttggcaaa aaggtttagg ttccgtgtgg attttgattg 5280 tccacagtat gagcaggaca ctgagctgtt cgctcttgat attggtgtgg cttacagatg 5340 cgttaattca gcccgattct tggaaaccaa aactggagac tcaaggtggg cttcacaagc 5400 cattagtggc tgtgaagcac ttaagttcaa tgaagagatc aaaatggcaa ttctggacca 5460 taagtctcca ttgttcttgg aagaaggtgc accaaacgtg cacattaaaa aaaggatgtt 5520 cagaggtgac aaagttagaa ggtcacgctc tatctccgcc aaaagggggc caaattcaga 5580 attgcaggga aagagaggat ttaggtccct ctcagctaga attgaaagat ttggaaaaaa 5640 tgagtttgga agacgtgctt caacaggcga ggcgccaccg ggtaggagtg tatctatgga 5700 aaactcacat agacccggcg aaggaactta tgacggttcc tccccctgaa ggattcaagg 5760 aaggtgaaag ctttgaaggc aaagagcttt accttcttct ttgcaatcat tattgtaaat 5820 atttattcgg taatattgct gttttcgggt cgtctgataa gacccagttt cccgctgtcg 5880 gatttgatac ccctccggtt cattacaatt tgacaacgat cccaaaggaa ggtgaaactg 5940 aagaacaaaa gaagaccaga gagggttcat ctggtgaaaa aacgaaaatt tggagaatcg 6000 acttgtcaaa tgtcgtacct gaattgaaaa cctttgctgc cacttcgagg cagaactctt 6060 tgaacgaatg tacgttcagg aagctttgtg agccatttgc cgacttggct cgcgaatttc 6120 ttcatgaaag gtggtcaaga ggattggcta ccaacatata caagaaatgg cccaaagctt 6180 tcgaaaaaag cccgtgggtg gcatttgact ttgccaccgg tctcaaaatg aatcgtctaa 6240 cacctgatga aaaacaggtg attgatagga tgaccaaaag gctttttcgt actgaaggac 6300 aaaaaggggt tttcgaggca ggttcagaga gtaatctgga actggagggt tagaagtcgt 6360 atcaaattcc gcaaacttgg tcgcggtctt gcaggttgac atgcctgcct ttatacgtaa 6420 ataaagggtt cacccggttt tctgtgcatt tccgggttag tgtggttttt ctagagtcta 6480 gagtttgtcc attct 6495 //