ID   JQ070390; SV 1; linear; genomic RNA; STD; VRL; 1785 BP.
XX
AC   JQ070390;
XX
DT   15-APR-2012 (Rel. 112, Created)
DT   15-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Pata virus isolate CAF1968/01 segment 5, complete sequence.
XX
KW   .
XX
OS   Pata virus
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1785
RX   PUBMED; 22438872.
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R.,
RA   Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.;
RT   "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses
RT   Identify Pata Virus as a Distinct Species within the Genus Orbivirus";
RL   PLoS One 7(3):E31911-E31911(2012).
XX
RN   [2]
RP   1-1785
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.;
RT   ;
RL   Submitted (22-NOV-2011) to the INSDC.
RL   Vector-borne Viral Diseases Programme, Institute for Animal Health,
RL   Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United
RL   Kingdom
XX
DR   MD5; 1ed5961ce59889d2ab30d6edf5065d49.
XX
CC   GenBank Accession Numbers JQ070386-JQ070395 represent the complete
CC   genome of Pata virus isolate CAF1968/01.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1785
FT                   /organism="Pata virus"
FT                   /segment="5"
FT                   /host="Aedes palpalis"
FT                   /isolate="CAF1968/01"
FT                   /mol_type="genomic RNA"
FT                   /country="Central African Republic"
FT                   /collected_by="J.P. Digoutte and F.X. Pajot"
FT                   /collection_date="1968"
FT                   /db_xref="taxon:1170506"
FT   CDS             33..1688
FT                   /codon_start=1
FT                   /product="NS1"
FT                   /note="tubule protein; TuP"
FT                   /db_xref="InterPro:IPR002630"
FT                   /db_xref="UniProtKB/TrEMBL:H9ZXS6"
FT                   /protein_id="AFH41523.1"
FT                   /translation="MERFIKKFNIIGEEANAIRLFYHISEQWTCSHLRRDCFINGLCAK
FT                   QNFKAAIDLILDHDDVPAAHRLVMIAKNVLADRETVWLQSYRSFSQPYEEEVERKINIM
FT                   GVQLLEHYQTSGMMEEAGKLEAQKRGERIRLDDSFAALPYLYIPIAHHQILNPLRVMRF
FT                   RQIGYYFYNPEFADDWIPPDAYAIRSQRFRICRGIQERIPVCLETGFKGPVFQVMFLPV
FT                   SMLPMFEDQQFRKHINWYMSAAVKVYLQIGTNEERRFALQLFGMCPAGESPIHQMMLGR
FT                   IIAGGRETNLVALRSRIQGNMSWESWLLPMFLVRVAVQERAFYDDVEKFMRMGFKCQLC
FT                   YMKTECLRENAYYTDVRTSEMLGVPITRAITIREHVSSAESMVKFSVTGSEHIGRIGDH
FT                   YFTCEVHSSMEALIFTLTQIHKWIRGSGIWSGTQWREGIYMLARLLIRWPLTKKQISAA
FT                   YRLFCFVCYGYAPRRDGSLPNWDDLGKFLDIILNGPELNMAESEQAFALMFDLGRYIIM
FT                   IECAARTQIPGFAAPECDEGEIQNLTELLATMWQ"
XX
SQ   Sequence 1785 BP; 506 A; 314 C; 442 G; 523 T; 0 other;
     gtaaaaaagt tctttcgttg gctgccacca agatggagcg ttttattaaa aaattcaata        60
     taattggaga agaagcgaat gcaattcggc tattttatca tatttcagaa cagtggacgt       120
     gctcccattt gcgccgagac tgttttatca atgggttatg tgcaaaacaa aatttcaaag       180
     cagcaattga tttgattctt gatcatgatg acgttccggc ggcgcacaga ttggtcatga       240
     ttgcaaagaa tgttctagct gatagggaga cggtctggtt acaaagctat cgtagctttt       300
     ctcagcctta tgaggaggaa gtggaaagga aaatcaacat aatgggggtg cagcttcttg       360
     aacactatca aactagtggt atgatggaag aggcaggtaa gcttgaagca cagaaacggg       420
     gtgaaagaat caggctggat gatagctttg ctgccctacc ttatctctac atacctatcg       480
     cgcatcatca gatcttgaat cctctacgtg tgatgagatt ccgtcagatt ggctattatt       540
     tctacaaccc ggaatttgca gatgattgga ttccaccaga tgcatatgct attaggagtc       600
     agcgattccg gatttgtaga ggaatacaag agaggattcc ggtatgttta gaaacaggat       660
     tcaaggggcc agttttccag gttatgttcc taccagtgtc gatgctaccg atgtttgaag       720
     atcaacagtt tcgcaaacac ataaactggt atatgtcagc tgcagtaaaa gtttatttac       780
     aaattggaac aaatgaggaa cgtcgatttg ctctgcaatt gtttggaatg tgtccagcgg       840
     gtgaatcacc aatacatcag atgatgttgg gaagaataat tgcaggcgga cgtgaaacaa       900
     atctggtagc attaagatca cggattcaag ggaacatgag ttgggagagc tggttgttgc       960
     caatgttctt ggttcgtgtt gcggtccagg aacgtgcatt ctatgatgat gttgaaaagt      1020
     ttatgcggat gggtttcaaa tgtcagctat gctacatgaa gactgagtgc cttagggaga      1080
     acgcttacta tacggatgta cgcacaagtg agatgctagg tgttcctatt acacgagcga      1140
     tcacaattag agagcacgta agcagtgcag agtcgatggt taaattttct gttacaggta      1200
     gtgaacacat cggaagaatt ggtgatcatt atttcacttg tgaggtgcat tcaagtatgg      1260
     aagctctgat cttcacttta actcagattc ataaatggat ccgtggttca ggtatttggt      1320
     ctggaactca gtggcgtgag ggaatctata tgcttgctag attattaatt cgatggccat      1380
     tgacaaagaa gcagatcagt gcggcatatc ggttgttctg tttcgtttgt tatggttatg      1440
     cgccacgccg agatggaagc ttgccaaact gggatgatct gggtaagttt ttggatatta      1500
     tcttgaatgg acctgaactc aacatggcgg aatcagaaca agccttcgct ttgatgtttg      1560
     atcttggacg ctacatcatc atgatcgagt gcgccgctag gacacagata ccaggatttg      1620
     ccgcaccaga atgtgatgaa ggcgaaattc aaaatttgac tgaattgctt gcgaccatgt      1680
     ggcagtgatg ttagaacttt tgaaccgaca ttgattttta tcttctcagt tttctttatt      1740
     taactataac ttgtaaggcg aactccatca gagctttaca cttac                      1785
//