ID JN817383; SV 1; circular; genomic DNA; STD; VRL; 2935 BP. XX AC JN817383; XX DT 20-MAR-2012 (Rel. 112, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Beet curly top virus isolate pCO-95-6-31, complete genome. XX KW . XX OS Beet curly top virus OC Viruses; Geminiviridae; Curtovirus. XX RN [1] RP 1-2935 RA Hanson S.F.; RT "Characterization of a curly top virus strain isolated from sugar beet in RT Colorado that shares sequence features from both BMCTV and BSCTV"; RL Unpublished. XX RN [2] RP 1-2935 RA Hanson S.F.; RT ; RL Submitted (05-OCT-2011) to the INSDC. RL Entomology, Plant Pathology, and Weed Science, New Mexico State University, RL 945 College Ave, Las Cruces, NM 88003, USA XX DR MD5; 491faafd5259379802ccd6359e9628b6. DR EuropePMC; PMC5904752; 29530481. XX FH Key Location/Qualifiers FH FT source 1..2935 FT /organism="Beet curly top virus" FT /host="Beta vulgaris" FT /isolate="pCO-95-6-31" FT /mol_type="genomic DNA" FT /country="USA:Colorado" FT /collection_date="1995" FT /identified_by="Drake Stenger" FT /db_xref="taxon:10840" FT gene 351..617 FT /gene="V3" FT CDS 351..617 FT /codon_start=1 FT /gene="V3" FT /product="V3" FT /db_xref="InterPro:IPR009997" FT /db_xref="UniProtKB/TrEMBL:H9A533" FT /protein_id="AFD23481.1" FT /translation="MMVCLPDWLFLLFIFSILLQSGTNFYGTFQSGSISRQLSSLSSSI FT DQLFLKVQQVVYTRYPSRDRGSDPRRRRGLSAIPEGSEEAAEV" FT gene 427..807 FT /gene="V2" FT CDS 427..807 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="InterPro:IPR009931" FT /db_xref="UniProtKB/TrEMBL:H9A534" FT /protein_id="AFD23479.1" FT /translation="MGPFRVDQFPDNYPAFLAVSTSCFLRYNRWCILGIHQEIEALTLE FT EGEVFLQFQKEVKKLLRCKVNFHRKCSLYEEIYKKYVYNVPEKKGESSKCVAEEEEDYY FT DFEEIPMEETCDKKQDSEVKDV" FT gene 647..1411 FT /gene="V1" FT CDS 647..1411 FT /codon_start=1 FT /gene="V1" FT /product="putative capsid protein V1" FT /db_xref="GOA:H9A535" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:H9A535" FT /protein_id="AFD23480.1" FT /translation="MRKYTRNTYTMSQKRKVNPQSAWPKKRRTTTTSRKYQWRRPVTKN FT RTPKLKMYDDMLGAGGIGSTISNNGMITMLNNYVQGIGDSQRSNNVTVTKHLKFDMALM FT GSSPFWETPNYMTQYHWIIIDKDVGSVFPTKLSSIFDIPDNGQAMPSTYRIRRDMNERF FT IVKKKWRTHLMSTGTGYGGKETYKAPSMPNYKKPMNINVRNLNMRTIWKDTGGGKYEDV FT KENALLYVVVNDNTDNTNMYATLFGNCRCYFY" FT gene complement(1428..1838) FT /gene="C3" FT CDS complement(1428..1838) FT /codon_start=1 FT /gene="C3" FT /product="C3 replication enhancer protein" FT /db_xref="GOA:H9A536" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9A536" FT /protein_id="AFD23477.1" FT /translation="MNVIRDFRTEEPITLQQATNSIPVDLVPNPLYLKLQDFYRSGPVY FT QLKVQIRFNHNLRKYLNLHKCWIDLTITGSHRTLTGDRFLRVLKNQVDREIKKRSFLSI FT NIVIEILNHVLYSVFNFVNSVIQYTSIAMKLY" FT gene complement(1525..1968) FT /gene="C2" FT CDS complement(1525..1968) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:H9A537" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9A537" FT /protein_id="AFD23476.1" FT /translation="MKPLGPGHYKIQSSPNSQVLSLITIKKRPRKINLPCKCHFTIHHE FT CNQGFSHRGTHYAATSDEFHTRGLGTESTVPQTPGLLPFGASLSTESPDKIQPQPPQIL FT ESSQVLDRFDDHWITQDIDWRPFFESLEEPSRQGNQKTIFSLN" FT gene complement(1859..2935) FT /gene="Rep" FT CDS complement(1859..2935) FT /codon_start=1 FT /gene="Rep" FT /product="Rep protein" FT /note="replication associated protein" FT /db_xref="GOA:H9A538" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9A538" FT /protein_id="AFD23482.1" FT /translation="MPRSPSLQIKAKNIFLTYPRCSVIKEDALEIWKNIPCPSDKLFRR FT VSREKHQEGSLHLHALIQFKGKAQFRNPRHFDITHPSSSSTFHPNFQGAKSASEVKQNN FT EKDGDYVDWGTFQVDGRSARGGQQTANDAAAEALNAGNAAEALQIIREKLPEKFIFQYH FT NLKPNLEAIFLPPPDIYQPPYPQSSFTQVPEIVQEWADSYFRGCVSARPFRYNSIIIEG FT DSRTGKTMWPRCLGPHNYITGHLDFSLKTYSDNVLYNVIDDVDPNYLKMKHWKHLIGAQ FT REWQTNLKYGKPRVIKGGIPSIILCNPGEGSSYQDFLNKSENEALRSWTLQNSVFAKLT FT SPLFDNNQEASSQDQSSL" FT gene complement(2635..2856) FT /gene="C4" FT CDS complement(2635..2856) FT /codon_start=1 FT /gene="C4" FT /product="putative C4 protein" FT /db_xref="UniProtKB/TrEMBL:H9A539" FT /protein_id="AFD23478.1" FT /translation="MLWKYGKIFHAHLTNYLGEYPGKNIRRGPCISTPSSNSKVKHNSE FT TLDTSTSLILPQAPPSTPTSREQNQHPR" XX SQ Sequence 2935 BP; 832 A; 512 C; 655 G; 936 T; 0 other; gtgttactat ttcaattggg ggctctcgta aacttgtatt aattgggtgc tatgggagcc 60 cttatatacc accaggggcc atccgcaata atattaccgg atggccccga aaaaaagtgg 120 cccccaattg aaacgtgaca cgtgtaatcg cataataggt tgtcggtgct tggaaacttc 180 ctatgtaagt ttcccttctc taaccaagtt ttgactagtc caaaagttgc ggccgacaac 240 ttgctttact tttttaaagt aaagtaagtg ttactattca aaacttgctg agtaagtttg 300 gaatattttt ctacttaaat agctatacga ctacgtatag gtatttataa atgatggtct 360 gtttacctga ctggttattt ttgctattta tcttcagtat tctacttcaa tcaggtacga 420 acttttatgg gacctttcag agtggatcaa tttccagaca attatccagc ctttctagca 480 gtatcgacca gttgtttctt aaggtacaac aggtggtgta tactaggtat ccatcaagag 540 atagaggctc tgaccctaga agaaggcgag gtctttctgc aattccagaa ggaagtgaag 600 aagctgctga ggtgtaaggt caactttcat aggaagtgtt cgttgtatga ggaaatatac 660 aagaaatacg tatacaatgt cccagaaaag aaaggtgaat cctcaaagtg cgtggccgaa 720 gaagaggagg actactacga cttcgaggaa ataccaatgg aggagacctg tgacaaaaaa 780 caggactccg aagttaaaga tgtatgatga tatgcttggt gctggtggta taggttctac 840 cattagtaat aatggtatga ttactatgtt gaataattat gtccagggta ttggtgatag 900 tcagcgatcg aacaacgtta ctgtgacgaa gcatttaaag tttgatatgg ctcttatggg 960 gagttctccg ttctgggaga ctcctaatta tatgacccaa tatcattgga ttatcataga 1020 caaggatgtt gggtcagtgt ttcctactaa gttatcgagt atatttgata tccccgataa 1080 cggtcaggct atgccttcta cttatcgtat tcgaagagat atgaacgaga ggttcattgt 1140 gaagaagaag tggagaactc atttgatgtc tactggcact ggctatggag gcaaggagac 1200 ttacaaggct ccttcaatgc caaattacaa gaaaccgatg aatatcaatg tccgcaatct 1260 gaacatgagg actatttgga aagacaccgg tggtgggaag tatgaagacg tgaaggagaa 1320 tgctttgctc tatgttgttg ttaatgataa tacggataat actaatatgt atgccacatt 1380 gtttggcaat tgtagatgtt atttctatta ataaaaatgt tattttttta atacaacttc 1440 attgcaatac tagtatattg aattacacta ttgacgaaat tgaagacaga atacaataca 1500 tgatttaata tttctattac aatgttaatt gagagaaaag atcgtttttt gatttccctg 1560 tcgacttggt tcttcaagac tctcaaaaaa cggtctccag tcaatgtcct gtgtgatcca 1620 gtgatcgtca aatctatcca gcacttgtga agattcaagt atttgcggag gttgtggttg 1680 aatcttatct ggactttcag ttgataaact ggccccgaac ggtagaagtc ctggagtttg 1740 aggtacagtg gattcggtac caagtccacg ggtatggaat tcgtcgcttg ttgcagcgta 1800 atgggttcct ctgtgcgaaa atccctgatt acattcatga tgaattgtga aatgacactt 1860 acaaggaaga ttgatcttgc gaggacgctt cttgattgtt atcaaagaga ggacttgtga 1920 gtttggcgaa gactgaattt tgtaatgtcc aggacctaag ggcttcattt tctgatttat 1980 ttaggaagtc ctggtaagag cttccttcgc ctggattgca taatataata ctaggaatac 2040 cacctttaat gacacgtggt tttccatact ttaagtttgt ctgccactct ctttgtgcgc 2100 ctataaggtg cttccaatgc ttcatcttta agtaattggg atctacgtca tcaatgacgt 2160 tatacagaac attatcacta taagttttta aactaaaatc taaatgccca gtaatataat 2220 tatgtggacc taaacacctg ggccacattg ttttaccagt cctagaatca ccctctatga 2280 ttatactatt atatctaaaa ggccgcgcag atacacaacc ccgaaaataa gagtcggccc 2340 attcttgaac aatttctgga acttgagtga aagaagattg tggatatgga ggttgatata 2400 tatctggtgg aggaagaaaa atggcttcta aattaggttt aaggttgtga tactgaaaaa 2460 taaatttttc tgggagtttc tcccttatta tttgcagtgc ttcagctgca ttacctgcat 2520 ttaatgcttc tgctgctgca tcattagctg tctgctggcc tcctctagca gatcttccgt 2580 cgacttgaaa tgtaccccag tcgacgtaat caccgtcctt ctcgttgttt tgttttacct 2640 cggatgctga ttttgctccc tggaagttgg ggtggaaggt ggagcttgag gaaggatgag 2700 tgatgtcgaa gtgtctaggg tttctgaatt gtgctttacc tttgaattgg atgagggcgt 2760 ggagatgcag ggacccctcc tgatgttttt cccgggatac tctcctaaat aatttgtcag 2820 atgggcatgg aatatttttc catatttcca gagcatcttc ttttataact gaacatcgtg 2880 ggtatgtgag aaagatattt ttggctttaa tttgcaatga tggtgatcga ggcat 2935 //