ID JN809821; SV 1; circular; genomic DNA; STD; VRL; 2750 BP. XX AC JN809821; XX DT 16-JAN-2012 (Rel. 111, Created) DT 16-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Ageratum yellow vein virus isolate AFSP6d segment A, complete sequence. XX KW . XX OS Ageratum yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2750 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT "First report and molecular characterization of begomoviruses infecting RT Sauropus androgynus in Thailand"; RL Unpublished. XX RN [2] RP 1-2750 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT ; RL Submitted (03-OCT-2011) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Republic of RL China XX DR MD5; f64507b25c1fef05ae1abe3e8b8a547e. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Ageratum yellow vein virus" FT /segment="A" FT /host="Sauropus androgynus" FT /isolate="AFSP6d" FT /mol_type="genomic DNA" FT /country="Thailand:Kamphaengsaen" FT /collection_date="2010" FT /db_xref="taxon:44560" FT gene 135..485 FT /gene="V2" FT CDS 135..485 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2E6S0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2E6S0" FT /protein_id="AEX37961.1" FT /translation="MWDPLVNEFPETVHGLRCMLAVKYCQLIEQTYAPDTVGYDLIRDL FT ISVIRARNYVEASRRYSHFNSRLEGTTSSELRHPRDEPCCCPHCPRHQQKKDMDQQAHV FT SQAQILQSVQKP" FT gene 295..1068 FT /gene="V1" FT CDS 295..1068 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H2E6R5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2E6R5" FT /protein_id="AEX37958.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNKKRIW FT TNRPMYRKPRFYRVYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVIFYLVRDRRPYGSAMDFGQVFNMYDNE FT PSTATIKNDLRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1065..1469) FT /gene="C3" FT CDS complement(1065..1469) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:H2E6X0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E6X0" FT /protein_id="AEX37960.1" FT /translation="MDSRTGELLTATQCESGVYIWTIKNPLYFKITKHHERPFNTNHDI FT ITIQIQFNHNLRKALGIHQCFLNFQIWTRLQPQTWRFLRVFRVQCMKYLDNMGVISINN FT VIRACDHVLWDVLEKTEYVTQSNIIKFNLY" FT gene complement(1210..1617) FT /gene="C2" FT CDS complement(1210..1617) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:H2E6R1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E6R1" FT /protein_id="AEX37959.1" FT /translation="MQNSSPSTAHYTQVPIKVQHRIAKRRPVRRRRVDLTCGCSYYFGI FT DCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTVQPQ FT PEESVGNTPVFSELPDLDSLTTSDLAFLKSI" FT gene complement(1517..2605) FT /gene="C1" FT CDS complement(1517..2605) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E6W0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E6W0" FT /protein_id="AEX37957.1" FT /translation="MAPPRPFKINAKNYFLTYPQCSLTKEEALSQLKNLETPTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKFQCKNNRFFDIVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAKALNSGSKSEALNVIRELAPKDFVLQFH FT NLNSNLDRIFTPPLEVYVSPFSSSSFDQVPEELECWVSENVRDAAARPWRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFITLNSPL FT YSGTNQSATQNSQEEASSQAES" FT gene complement(2158..2448) FT /gene="C4" FT CDS complement(2158..2448) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2E6W1" FT /protein_id="AEX37962.1" FT /translation="MGLLISTCLSSSKGNSSARITDSSTLYPQPGQHISIRTFRELNPA FT PTSSPISTRMEILSNGVNSRSTDDLHEGDNRQPMTLTPRRLTAAVSQRLLM" XX SQ Sequence 2750 BP; 735 A; 556 C; 592 G; 867 T; 0 other; accggatggc cgcgattttt tttaaagtgg tccccaccac taacaaatgt cccccactaa 60 aaacgctctc tcaaagctta attgttttgt ggtcccttat ttaaacttgc tcagcaagta 120 gttcactccg cactatgtgg gatccattag taaacgagtt tcccgaaact gttcacggtc 180 ttaggtgtat gcttgccgta aaatattgtc agttaattga acagacatac gctccagata 240 cggttggtta cgatcttata cgagatttaa tttcagtaat tcgtgctcgc aattatgtcg 300 aagcgtcccg ccgatatagt catttcaact cccgcctcga aggtacgacg tcgtctgaac 360 ttcgacaccc ccgtgatgag ccgtgctgct gcccccactg tcctcgtcac caacaaaaaa 420 aggatatgga ccaacaggcc catgtatcgc aagcccagat tctacagagt gtacaaaagc 480 cctgatgtgc ccaaaggttg tgaaggtcca tgtaaggtcc aatcgtatga acagaggcac 540 gacatatccc atgttggtaa agtattatgt gttagtgatg tcactcgtgg tagtgggctt 600 acccatcgtg ttggtaagag attctgtgtg aagtccgttt atgtattggg taagatatgg 660 atggatgaaa atatcaaaac caagaaccat acgaacactg tgatttttta tcttgttcgt 720 gatagaaggc cctatggttc tgctatggat tttggtcagg tgtttaacat gtatgataat 780 gagcccagta ctgctactat caagaatgat cttcgagatc gttatcaagt gttaaggaaa 840 ttcactgcaa cagttacagg tggtcaatat gcttctaagg agcaggcgtt ggttaggaaa 900 tttatgaaga ttaataatta tgtagtttat aatcatcaag aggctgctaa gtatgacaat 960 catactgaga atgccttgtt attgtatatg gcttgtactc atgccagtaa tccagtgtat 1020 gctactttga agatcagaat ctatttttat gattctgttc agaattaata aagattgaat 1080 tttattatat tagattgtgt tacatattct gttttttcca atacatccca taatacatga 1140 tcacatgctc taattacatt gttaatacta attacaccca tattatctaa atatttcata 1200 cattgaaccc taaatactct taagaaacgc caagtctgag gttgtaagcg agtccagatc 1260 tggaagttca gaaaacactg gtgtattccc aacgctttcc tcaggttgtg gttgaactgt 1320 atttggatcg ttatgatgtc gtggttggtg ttgaatggtc tctcgtggtg cttggttatc 1380 ttgaaatata ggggattttt gatcgtccag atatacacgc cactctcgca ttgagttgca 1440 gtgagtaatt cccctgtgcg agaatccatg attggcgcag tctatgccga agtagtatga 1500 gcagccgcac gttagatcaa ctctccgcct gcgaactggc ctcctcttgg ctattctgtg 1560 ttgcactttg attggtacct gagtataatg ggctgttgag ggtgatgaat tctgcattct 1620 ttaatgccca atcttttaat gccgaattct tatcctcatt caagtactct ttatatgatg 1680 acgttgggcc tggattgcag aggaagatag tgggaattcc gcctttaatt tgaattggct 1740 tcccgtactt tgtgttgctt tgccagtccc tttgggcccc catgaattct ttaaagtgct 1800 ttagatagtg gggatctacg tcatcaatga cgttgtacca ggcatcatta ctgtacacct 1860 ttggactcag gtctagatga ccacacagat aattatgtgg acccaatgac ctggcccaca 1920 ttgttttccc tgtacgacta tctccctcaa taacaatact tatcggtctc catggccgcg 1980 cagcggcatc ccttacattc tcggacaccc aacactcaag ttcttccgga acttgatcaa 2040 aagaagaaga agaaaaagga gaaacataaa cctctaaagg aggtgtaaaa atcctatcta 2100 aattactatt taaattatga aattgtaaaa caaaatcctt aggggctaat tccctaatta 2160 cattaagagc ctctgactta ctgccgctgt taagcgcctt ggcgtaagcg tcattggctg 2220 tctgttgtcc ccctcgtgca gatcgtccgt cgatctggaa ttcaccccat tcgagagtat 2280 ctccatcctt gtcgatatag gacttgacgt cggagctgga tttagctccc tgaatgttcg 2340 gatggaaatg tgctgacctg gttggggata caatgtcgaa gaatctgtta ttcttgcact 2400 ggaatttccc ttcgaactgg ataagcacgt ggagatgagg agacccatct tcgtgaagct 2460 ctcggcagat tttaatgaat tttttattgg ttggggtttc taggtttttt aattgggaaa 2520 gtgcttcctc tttggtgaga gagcactgtg ggtatgtgag gaagtaattt ttggcattta 2580 ttttaaatgg tcttggagga gccattgact tggtcaatcg gtgtctctac taattctcta 2640 gcaatcggtg tattggagtc ctatatatag ttggacacca aatggcaatt attgtaattt 2700 tgaaaagaaa ttcgaattca aattccaaaa gcggccatcc gtataatatt 2750 //