ID JN809812; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC JN809812; XX DT 16-JAN-2012 (Rel. 111, Created) DT 16-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Ageratum yellow vein virus isolate AFSP2a segment A, complete sequence. XX KW . XX OS Ageratum yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT "First report and molecular characterization of begomoviruses infecting RT Sauropus androgynus in Thailand"; RL Unpublished. XX RN [2] RP 1-2762 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT ; RL Submitted (03-OCT-2011) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Republic of RL China XX DR MD5; 963dc97f661a7d52fb88fb6700c74892. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Ageratum yellow vein virus" FT /segment="A" FT /host="Sauropus androgynus" FT /isolate="AFSP2a" FT /mol_type="genomic DNA" FT /country="Thailand:Kamphaengsaen" FT /collection_date="2010" FT /db_xref="taxon:44560" FT gene 135..485 FT /gene="V2" FT CDS 135..485 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2E6S0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2E6S0" FT /protein_id="AEX37908.1" FT /translation="MWDPLVNEFPETVHGLRCMLAVKYCQLIEQTYAPDTVGYDLIRDL FT ISVIRARNYVEASRRYSHFNSRLEGTTSSELRHPRDEPCCCPHCPRHQQKKDMDQQAHV FT SQAQILQSVQKP" FT gene 295..1068 FT /gene="V1" FT CDS 295..1068 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H2E6R5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2E6R5" FT /protein_id="AEX37904.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNKKRIW FT TNRPMYRKPRFYRVYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVIFYLVRDRRPYGSAMDFGQVFNMYDNE FT PSTATIKNDLRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1065..1469) FT /gene="C3" FT CDS complement(1065..1469) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:H2E6N6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E6N6" FT /protein_id="AEX37907.1" FT /translation="MDSRTGELLTATQCESGVYIWTIKNPLYFKITKHHERPFNTNHDI FT ITIQIQFNHNLRKALGIHQCFLNFQIWTRLQPQTWRFLRVFRVQCMKYLDNMGVISINN FT VIRACDHILWDVLEKTEYVTQSNIIKFNLY" FT gene complement(1210..1617) FT /gene="C2" FT CDS complement(1210..1617) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:H2E6N7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E6N7" FT /protein_id="AEX37906.1" FT /translation="MRNSSPSRSHCTQVPIKVQHRIAKRRPVRRRRVDLTCGCSYYFGI FT DCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTVQPQ FT PEESVGNTPVFSELPDLDSLTTSDLAFLKSI" FT gene complement(1517..2605) FT /gene="C1" FT CDS complement(1517..2605) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E6N8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E6N8" FT /protein_id="AEX37903.1" FT /translation="MPQPKKFLINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYM FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILKEKAPKDFVLQFH FT NLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVRDAAARPWRPKSIVVEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWAIKNAEFITLTEPL FT YSSTNQSATQNSQEETSSQAES" FT gene complement(2155..2577) FT /gene="C4" FT CDS complement(2155..2577) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2E6Q7" FT /protein_id="AEX37905.1" FT /translation="MRRIISSLIHSAPLLKKRHFPKSQPYQPRLINYSYVFAGNYTKMG FT LLTCMSSSSSKANSSAKTTDSSISPPQAGQHISIRTFRELKAQQMLKHTWKKTETCLIM FT EFSKSMEDQLEEVANLQTTHMPRQSIQGPKQRPSIY" XX SQ Sequence 2762 BP; 736 A; 558 C; 595 G; 873 T; 0 other; accggatggc cgcgattttt tttaaagtgg tccccaccac taacaaatgt cccccactaa 60 aaacgctctc tcaaagctta attgttttgt ggtcccttat ttaaacttgc tcagcaagta 120 gttcactccg cactatgtgg gatccattag taaacgagtt tcccgaaact gttcacggtc 180 ttaggtgtat gcttgccgta aaatattgtc agttaattga acagacatac gctccagata 240 cggttggtta cgatcttata cgagatttaa tttcagtaat tcgtgctcgc aattatgtcg 300 aagcgtcccg ccgatatagt catttcaact cccgcctcga aggtacgacg tcgtctgaac 360 ttcgacaccc ccgtgatgag ccgtgctgct gcccccactg tcctcgtcac caacaaaaaa 420 aggatatgga ccaacaggcc catgtatcgc aagcccagat tctacagagt gtacaaaagc 480 cctgatgtgc ccaaaggttg tgaaggtcca tgtaaggtcc aatcgtatga acagaggcac 540 gacatatccc atgttggtaa agtattatgt gttagtgatg tcactcgtgg tagtgggctt 600 acccatcgtg ttggtaagag attctgtgtg aagtccgttt atgtattggg taagatatgg 660 atggatgaaa atatcaaaac caagaaccat acgaacactg tgatttttta tcttgttcgt 720 gatagaaggc cctatggttc tgctatggat tttggtcagg tgtttaacat gtatgataat 780 gagcccagta ctgctactat caagaatgat cttcgagatc gttatcaagt gttaaggaaa 840 ttcactgcaa cagttacagg tggtcaatat gcttctaagg agcaggcgtt ggttaggaaa 900 tttatgaaga ttaataatta tgtagtttat aatcatcaag aggctgctaa gtatgacaat 960 catactgaga atgccttgtt attgtatatg gcttgtaccc atgccagtaa tccagtgtat 1020 gctactttga agatcagaat ctatttttat gattctgttc agaattaata aagattgaat 1080 tttattatat tagattgtgt tacatattct gttttttcca atacatccca taatatatga 1140 tcacacgctc taattacatt gttaatacta attacaccca tattatctaa atatttcata 1200 cattgaaccc taaatactct taagaaacgc caagtctgag gttgtaagcg agtccagatc 1260 tggaagttca gaaaacactg gtgtattccc aacgctttcc tcaggttgtg gttgaactgt 1320 atttggatcg ttatgatgtc gtggttggtg ttgaatggtc tctcgtggtg cttggttatc 1380 ttgaaatata ggggattttt gatcgtccag atatacacgc cactctcgca ttgagttgca 1440 gtgagtaatt cccctgtgcg agaatccatg attggcgcag tctatgccga agtagtatga 1500 gcacccgcac gttagatcaa ctctccgcct gcgaactggt ctcctcttgg ctattctgtg 1560 ttgcactttg attggtactt gagtacaatg gctccgtgag ggtgatgaat tccgcattct 1620 ttattgccca gtcttttaat gctgaatttt tttcctcgtc caagtattct ttatatgatg 1680 atgttgggcc tggattgcaa aggaagatag ttgggattcc acctttaatt tgaattggtt 1740 tcccgtactt agtgttgctt tgccagtccc tttgggcccc catgaattct ttaaagtgct 1800 ttagatagtg ggggtcgacg tcatcgatga cgttgtacca ggcatcatta ctgtatacct 1860 ttggactgag atcaaggtga ccacacagat aattatgtgg gcctaatgat ctggcccaca 1920 ttgttttgcc cgtacgacta tcgccctcta caacgatact cttcggtctc catggccgcg 1980 cagcggcatc ccttacattc tctgaaaccc attcttcaag ttcttctgga acttgatcga 2040 aagaagaaga caaaaaagga caaacaaaca cctctaaagg aggtgcaaaa atcctatcta 2100 aattagaatt taaattatga aactgtaaaa caaaatcttt aggagccttc tcctttaata 2160 tattgagggc cgctgctttg gaccctgaat tgattgcctc ggcatatgcg tcgtttgcag 2220 attggcaacc tcctctagct gatcttccat cgatttggaa aactccatga tcaagcacgt 2280 ctccgtcttt ttccatgtat gctttaacat ctgttgagct tttagctccc tgaatgttcg 2340 gatggaaatg tgctgacctg cttggggagg tgagatcgaa gaatctgttg ttttggcact 2400 tgaatttgcc ttcgaactgg atgaggacat gcaggtgagg agacccatct tcgtgtagtt 2460 ccctgcaaat acgtatgaat aatttattag tcggggttga tagggctgag atttgggaaa 2520 gtgcctcttc tttagtaagg gagcactgtg gataagtgag gaaataattc ttcgcattta 2580 ttaaaaattt ttttggctga ggcatattga ctggtcaatc gggtcctctc aaacttggct 2640 atgcaatcgg ggaatgggtc cttatttata gttgaggacc taaatggcat atttgtaatt 2700 attgaaatga aattcaaatt tcaaacccta acgctcccaa aagcggccat ccgtataata 2760 tt 2762 //