ID JN809811; SV 1; circular; genomic DNA; STD; VRL; 2749 BP. XX AC JN809811; XX DT 16-JAN-2012 (Rel. 111, Created) DT 16-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Ageratum yellow vein virus isolate AFSP1 segment A, complete sequence. XX KW . XX OS Ageratum yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2749 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT "First report and molecular characterization of begomoviruses infecting RT Sauropus androgynus in Thailand"; RL Unpublished. XX RN [2] RP 1-2749 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT ; RL Submitted (03-OCT-2011) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Republic of RL China XX DR MD5; 8061ae1969e856ba4b82750e07c8e092. XX FH Key Location/Qualifiers FH FT source 1..2749 FT /organism="Ageratum yellow vein virus" FT /segment="A" FT /host="Sauropus androgynus" FT /isolate="AFSP1" FT /mol_type="genomic DNA" FT /country="Thailand:Kamphaengsaen" FT /collection_date="2009" FT /db_xref="taxon:44560" FT gene 133..483 FT /gene="V2" FT CDS 133..483 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2E6M8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2E6M8" FT /protein_id="AEX37901.1" FT /translation="MWDPLLNEFPETVHGVRCMLAVKYCQLIEQTYAPDTVGYDLIRDL FT ISVIRARNYVEATRRYSHFHSRLEGTSPSELRHPRDEPCCCPHCPRHQQKKDMDQQAHV FT PEAQNVQNVQKP" FT gene 293..1066 FT /gene="V1" FT CDS 293..1066 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H2E6M9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2E6M9" FT /protein_id="AEX37898.1" FT /translation="MSKRPADIVISTPALKVRRRLNFDTPVMSRAAVPTVLVTNKRRTW FT TNRPMYRKPRMYRMYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNE FT PSTATINNDLRDRYQVLRKFTATVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1063..1467) FT /gene="C3" FT CDS complement(1063..1467) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:H2E6N0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E6N0" FT /protein_id="AEX37900.1" FT /translation="MDFRTGELLTATQCENGVYTWTIRNPLYFKITKHHERPFNTKHDI FT ITIQIQFNYNLRKALGIHQCFLSFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINN FT VIRACDHVLWDVLEKTEYVTNSHIIKFNLY" FT gene complement(1208..1615) FT /gene="C2" FT CDS complement(1208..1615) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:H2E6N1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E6N1" FT /protein_id="AEX37899.1" FT /translation="MRNSSPSTAHCTQVPIKVQHRIAKKRPVRRRRVDLTCGCSYYFGI FT DCANHGFSHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRETIQHQTRHHNDPNTVQLQ FT PEESVGNTPVFSELPDLDSLTTSDLAFLKSI" FT gene complement(1515..2603) FT /gene="C1" FT CDS complement(1515..2603) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E6N2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E6N2" FT /protein_id="AEX37897.1" FT /translation="MSPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGEFQCKNNRFFDLTSPTRSAHFHPNIQAAKSSSDVKSYM FT DKDGDVLDFGSFQIDGRSARGGCQTANDAYAEAINSGSKASALNILREKAPKDYILQFH FT NLNSNLDRIFAPPLEVFICPFLSSSFDQVPEELEEWAADNVRHAAARPWRPISIVIEEE FT SRAGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWALKNAEFITLNSPL FT YSGTNQSATQNSQEEASSQEES" FT gene complement(2153..2446) FT /gene="C4" FT CDS complement(2153..2446) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2E6N3" FT /protein_id="AEX37902.1" FT /translation="MGLLTCMFSSNSKGNSNAKTTDSSTSHPQPDQHISIRTFRQLKAH FT QMLNPTWTKTETCLILDLSKSMEDRLEEVAKLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2749 BP; 747 A; 541 C; 581 G; 880 T; 0 other; accggatggc cgcgattttt ttttagtggg cccagccact aacaaatgtc ctccacttaa 60 aacgctccct caaagcctat ttaattcaaa tccattataa atacttggtc ccaacgtttt 120 caaattaaag acatgtggga tcctcttttg aacgagtttc ccgaaactgt acacggtgtt 180 aggtgtatgc ttgccgtaaa gtattgtcag ttaatcgaac agacatacgc tccagatacg 240 gttggttacg atcttatacg agatttaatt tccgtaattc gtgctcgcaa ttatgtcgaa 300 gcgacccgcc gatatagtca tttccactcc cgccttgaag gtacgtcgcc gtctgaactt 360 cgacaccccc gtgatgagcc gtgctgctgt ccccactgtc ctcgtcacca acaaaagaag 420 gacatggacc aacaggccca tgtaccggaa gcccagaatg tacagaatgt acaaaagccc 480 tgatgtaccc aaaggttgtg aaggcccatg taaggtccaa tcgtatgaac agaggcacga 540 catatcccat gttggtaaag tattatgtgt aagtgatgtc actcgtggta gtggtcttac 600 ccatcgtgtt ggtaagagat tctgtgtgaa gtccgtttat gtattgggta aaatatggat 660 ggatgaaaat attaaaacca agaaccatac gaacactgtg atgttttatc ttgttcgaga 720 tagaaggccc ttcggtactg ctatggactt tggtcaggtg tttaacatgt atgataatga 780 gcctagtact gctactatca ataatgatct tcgagatcgt tatcaagttt taaggaaatt 840 cactgcaaca gtcacaggtg gtcaatatgc ttctaaggaa caggcgttgg ttaagaagtt 900 tatgaagatt aataattatg tagtttataa tcatcaagaa gctgctaagt atgacaatca 960 tactgagaat gccttgttat tgtatatggc ttgtactcat gccagtaatc cagtatatgc 1020 tactttgaag atcagaatct atttttatga ttctgttcag aattaataaa gattgaattt 1080 tattatatga gaatttgtta catattctgt tttttccaat acatcccata atacatgatc 1140 acatgctcta attacattgt tgatactaat tacacccaaa ttatctaaat atttcataca 1200 ttgaacccta aatactctta agaaacgcca agtctgaggt tgtaagcgag tccagatctg 1260 gaagctcaga aaacactggt gtattcccaa cgctttcctc aggttgtagt tgaactgtat 1320 ttggatcgtt atgatgtcgt gtttggtgtt gaatggtctc tcgtggtgct tggttatctt 1380 gaaatagagg ggatttctga tcgtccaggt atacacgcca ttctcgcatt gagttgcagt 1440 gagtaattcc cctgtgcgaa aatccatgat ttgcacaatc tatgccgaag tagtatgagc 1500 acccacacgt tagatcaact ctcctcctgc gaactggcct cttcttggct attctgtgtt 1560 gcactttgat tggtacctga gtacaatggg ctgttgaggg tgatgaattc cgcattcttt 1620 aatgcccact cttttaatgc tgaatttttt tcttcgtcca agtactcttt atatgatgat 1680 gttggtcctg gattgcaaag gaagatagtt gggattccac ctttaatttg aattggtttc 1740 ccgtacttgg tgttgctttg ccagtccctt tgggccccca tgaattcttt aaagtgcttt 1800 agatagtggg ggtctacgtc atcaatgacg ttataccacg catcattgct gtataccttt 1860 ggactcagat ctagatgacc gcacagataa ttatgtggac ccaatgaacg agcccacatt 1920 gtctttcctg cacgactctc ttcctctatg acaatactga tgggtctcca tggccgcgca 1980 gcggcatgcc ttacattatc agcagcccac tcttcaagtt cttcgggaac ttgatcaaat 2040 gaagaagata aaaaaggaca aataaaaacc tctaaaggag gtgcaaaaat cctatctaag 2100 ttactattta aattatgaaa ttgtaaaata taatctttgg gagctttctc ccttaatata 2160 ttgagggccg aagctttgga ccctgagttg attgcctcgg catatgcgtc gttggcagtt 2220 tggcaacctc ctctagccga tcttccatcg atttggaaag atccaaaatc aagcacgtct 2280 ccgtctttgt ccatgtagga tttaacatct gatgagcttt tagctgcctg aatgttcgga 2340 tggaaatgtg ctgatctggt tggggatgtg aggtcgaaga atctgttgtt tttgcattgg 2400 aattcccctt cgaattggat gagaacatgc aggtgaggag acccatcttc gtgtaattct 2460 ctgcaaattc ggatgaataa tttattggtt ggagtttcta gggctttaat ttgggaaagt 2520 gcttcctctt ttgttagaga acaatgtgga tatgtgagga aatagttttt ggcgtttatt 2580 ctgaatttat ttggaggact cattgacttg gtcaatcggt gtctctcaaa cttggctatg 2640 taattggtgt ctggtgtctt atttatatgt ggacactgaa tggcaatatt gcaattatca 2700 aaaagtaatt caaaattcaa atcctaaaag cggccatccg tataatatt 2749 //