ID JN676151; SV 1; circular; genomic DNA; STD; VRL; 2593 BP. XX AC JN676151; XX DT 23-JAN-2012 (Rel. 111, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 3) XX DE Tomato severe leaf curl virus - SLP 3, complete genome. XX KW . XX OS Tomato severe leaf curl virus - SLP 3 OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2593 RX PUBMED; 22684489. RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Cardenas-Conejo Y., RA Guevara-Gonzalez R.G., Arguello-Astorga G.R.; RT "A new strain of tomato severe leaf curl virus and a unique variant of RT tomato yellow leaf curl virus from Mexico"; RL Arch. Virol. 158(9):1835-1841(2012). XX RN [2] RP 1-2593 RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Arguello-Astorga G.R.; RT ; RL Submitted (13-SEP-2011) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica A.C., Camino a la Presa San Jose 2055, San Luis Potosi, S.L.P. RL 78216, Mexico XX DR MD5; ab8a7bfa6dec0f65e8d8a51f5d53397b. XX FH Key Location/Qualifiers FH FT source 1..2593 FT /organism="Tomato severe leaf curl virus - SLP 3" FT /host="tomoato plant" FT /mol_type="genomic DNA" FT /country="Mexico" FT /collection_date="01-Jun-2011" FT /db_xref="taxon:1127769" FT gene 186..941 FT /gene="AR1" FT /note="CP" FT CDS 186..941 FT /codon_start=1 FT /gene="AR1" FT /product="capsid protein" FT /note="encapsidation of viral genome; coat protein" FT /db_xref="GOA:H2E1I9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2E1I9" FT /protein_id="AEX93204.1" FT /translation="MPKRDAPWRLMAGTPKVSRSSNQSPRTGIGPKFDKAHAWVNRPMY FT RKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVRRFWRVNNHVVYNHQEAGKYENHTENAL FT LWYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(938..1336) FT /gene="AL3" FT /note="TrAP" FT CDS complement(938..1336) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /db_xref="GOA:H2E1J0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E1J0" FT /protein_id="AEX93205.1" FT /translation="MDSRTGESITVDQAESSVFIWEVPNPLYFTILSVENPIHTNTRIY FT HIQIRFNHNLRKALHLHKAYLNYQIWTTSVRASGTNYLNRFKYLVLLYLDRLGVICINN FT VVRAVRFATDKSYVNHVLENYSIKFKIY" FT gene complement(1083..1469) FT /gene="AL2" FT /note="TrAP" FT CDS complement(1083..1469) FT /codon_start=1 FT /gene="AL2" FT /product="transactivation protein" FT /note="transcriptional regulator of late genes; silencing FT supressor" FT /db_xref="GOA:H2E1J1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E1J1" FT /protein_id="AEX93206.1" FT /translation="MQNSSPSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANH FT GFTHRGEHHCGSGREFRFYLGSTKSPLFHDTQCREPNTHKHQDIPHPNTVQPQPEEGVA FT STQSVPQLPNLDDISSSFWDELLK" FT gene complement(1426..2460) FT /gene="AL1" FT CDS complement(1426..2460) FT /codon_start=1 FT /gene="AL1" FT /product="replication initiation protein" FT /note="RCR-initiator protein; rolling-circle replication FT initiator" FT /db_xref="GOA:H2E1J2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E1J2" FT /protein_id="AEX93208.1" FT /translation="MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMVQNLPWSVVKPTY FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQN FT YITKEGDYCESGQYKVSGGTKSNKDDVYYNAVNAASAGEALDIIRAGDPKTFIVSYHNV FT KANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGES FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLDKEENASLKAWTLHNAKFISLNST FT LYQA" FT gene complement(2014..2381) FT /gene="AL4" FT CDS complement(2016..2381) FT /codon_start=1 FT /gene="AL4" FT /product="AC4 protein" FT /db_xref="UniProtKB/TrEMBL:H2E1J3" FT /protein_id="AEX93207.1" FT /translation="MKLLKWFKICHGQSSNQRTYESPERNTQMDFRTSTVSSNSPGSPT FT SRMLDFSTSLTPEGLPIFIQTHRQPKTPTPSRITSPKKVIIVNPDNTKCLGVQNQTKTT FT FIITPSMQLVLERLSTL" XX SQ Sequence 2593 BP; 638 A; 556 C; 629 G; 770 T; 0 other; accggatggc cgcgattttt tttggacctg gcccactatc agaaattgcg ttgggccttc 60 ctggataaag ttaaccaatc agtacacgtt tgggtagtct aattattact aacttggtca 120 ccaagttgtt ttatggtcta taaatttgtc gttatgtgtg tggtccaacc atgtaaatag 180 tgataatgcc taagcgtgat gccccatggc gcttaatggc gggtacccct aaggtgagtc 240 ggtcctctaa ccagtctccc cggactggta ttgggcctaa attcgataag gcccatgcct 300 gggtaaacag gcccatgtat aggaagccca ggatatatcg ggcttggaga acgcccgatg 360 ttccaagagg ctgtgaaggc ccatgtaagg tccagtccta cgagcaacga cacgatatct 420 cccacgtggg gaaagtcatg tgcatatccg atgtcacacg tggtaatggt atcacccacc 480 gtgttggtaa gcggttctgt gttaagtctg tgtatatcct cggtaagata tggatggacg 540 agaacatcaa gctgaagaac cacacgaaca gtgtcatgtt ctggttagtg agggaccgta 600 gaccctatgg tacgcctatg gatttcggcc aggtgttcaa catgtttgac aatgagccca 660 gcactgccac ggtcaagaac gatctacgtg atcgttatca ggtcatgcac aagttctacg 720 gcaaggtgac aggtggacag tatgccagca acgagcaggc tatagtcagg cgattctgga 780 gggtcaacaa ccatgtggtc tacaatcacc aagaggctgg caagtatgag aatcacacgg 840 agaacgcgtt gttatggtat atggcatgta ctcatgcctc taaccctgtg tatgctactc 900 ttaagatccg gatctatttt tatgattcgg tgttaaatta ataaattttg aattttattg 960 aataattctc aagtacatga tttacatatg atttatctgt tgcgaagcga acagctctga 1020 ctacattatt aatgcaaata acacctaacc tatctaaata caataagact aaatatttaa 1080 atctatttaa gtaattcgtc ccagaagctc gaactgatgt cgtccagatt tggtagttga 1140 ggtacgcttt gtgtagatgc aacgccttcc tcaggttgtg gttgaaccgt atttggatgt 1200 ggtatatcct ggtgtttgtg tgtattgggt tctctacact gagtatcgtg aaatagaggg 1260 gatttggtac ttcccagata aaaacggaac tctctgcctg atccacagtg atgctctccc 1320 ctgtgcgtga atccatggtt ggcgcaatcg atgtgctggt agaacgagca gccacagttt 1380 aggtctatcc tctttcgacg aatcctggac tttgcaattt tgtgcttagg cttgatagag 1440 ggtggagttg agggagatga attttgcatt gtggagtgtc caggctttta atgatgcatt 1500 ttcctctttg tcgaggaaac ttttatagct ggctccctct cctggattgc agagcacgat 1560 tgatggtatc ccacctttaa tttgaactgg ctttccgtat ttgcagtttg attgccagtc 1620 cttttgggcc ccaatcagct ctttccaatg cttcatcttt aaatattgcg gagtgatgtc 1680 atcaatgacg ttgtattccg cttcatttga gtaaacccta gaattgaaat ctaggtgtcc 1740 actcaaataa ttgtgtgggc ctaaggcacg cgcccacatt gtctttcccg tcctcgattc 1800 accctcgatg attatactta taggtctctc cggccgcgca gcggcatccc taccaaaata 1860 atcatctgcc cattcttgca tctcgtccgg aacgtttgtg aacgacgaga gtggaaacgg 1920 aggaacccat ggttccggag ccttctgaaa gagccgctcg atgttagctt tgacgttatg 1980 gtagcttaca ataaacgttt ttgggtcacc ggcccttata atgtcgagag cctctccagc 2040 actagctgca ttgacggcgt tataataaac gtcgtctttg tttgattttg tacccccaga 2100 cactttgtat tgtccggatt cacaataatc accttctttg gtgatgtaat tctggacggc 2160 gttggtgtct ttggctgcct gtgcgtttgg atgaaaattg gcagaccttc tggggtgagt 2220 gaggtcgaaa aatctagcat ccttgatgtt ggacttcccg gagagttgga tgagacagtg 2280 gaggtgcgga aatccatctg cgtgttcctc tctggcgact cgtatgtacg ttggtttgac 2340 gactgaccat ggcagatttt gaaccatttc aatagcttca tctttgggga tatcacactg 2400 tggatatgtt aagaaaatat ttttggcagc tagacgaaat aaattagggt tccgtggcat 2460 ttttgtaaat atgagccagg acaccagggg gagctctctc taaaactcta tgttgctggt 2520 gtcctggtgt cccatttata ctaaaaccct ctgggggaca ccaagggcaa attcggccat 2580 ccgcaataat att 2593 //