ID JN676150; SV 1; circular; genomic DNA; STD; VRL; 2632 BP. XX AC JN676150; XX DT 23-JAN-2012 (Rel. 111, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 3) XX DE Tomato Chino La Paz virus -SLP 4, complete genome. XX KW . XX OS Tomato Chino La Paz virus -SLP 4 OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2632 RX PUBMED; 22684489. RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Cardenas-Conejo Y., RA Guevara-Gonzalez R.G., Arguello-Astorga G.R.; RT "A new strain of tomato severe leaf curl virus and a unique variant of RT tomato yellow leaf curl virus from Mexico"; RL Arch. Virol. 158(9):1835-1841(2012). XX RN [2] RP 1-2632 RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Arguello-Astorga G.R.; RT ; RL Submitted (13-SEP-2011) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica A.C., Camino a la Presa San Jose 2055, San Luis Potosi, S.L.P. RL 78216, Mexico XX DR MD5; 324576661b1911eeab0954a9f6ba3182. XX FH Key Location/Qualifiers FH FT source 1..2632 FT /organism="Tomato Chino La Paz virus -SLP 4" FT /host="tomato plant" FT /mol_type="genomic DNA" FT /country="Mexico" FT /collection_date="01-Jun-2011" FT /db_xref="taxon:1127768" FT gene 206..961 FT /gene="AR1" FT /note="CP" FT CDS 206..961 FT /codon_start=1 FT /gene="AR1" FT /product="capsid protein" FT /note="coat protein; encapsidation of viral genome" FT /db_xref="GOA:H2E1I4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2E1I4" FT /protein_id="AEX93199.1" FT /translation="MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSAWANRPMY FT RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV FT KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFWRVNHRVTYNNQEAARYENHTENAL FT MLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(958..1356) FT /gene="AL3" FT /note="REn" FT CDS complement(958..1356) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /note="AC3" FT /db_xref="GOA:H2E1I5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E1I5" FT /protein_id="AEX93200.1" FT /translation="MDSRTGESITAEQAESSVFIWEVPNPLYFTILSVENPIHTNTRIY FT HIQIRFNHNLRKALHLHKAYLNYQIWTTSVRASGTNYLNRFKYLVLLYLDRLGVICINN FT VIRAVRFATDKSYVNHVLENYSIKFKIY" FT gene complement(1103..1489) FT /gene="AL2" FT /note="TrAP" FT CDS complement(1103..1489) FT /codon_start=1 FT /gene="AL2" FT /product="transactivation protein" FT /note="transcriptional regulator of late genes" FT /db_xref="GOA:H2E1I6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E1I6" FT /protein_id="AEX93201.1" FT /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCVNH FT GFSHRGEHHCGTSREFRFYLGSTKSPLFHDTQCREPNTHKHQDIPHPNTVQPQPQEGVA FT STQSVPQLPNLDDISSSFWDELLK" FT gene complement(1446..2489) FT /gene="AL1" FT /note="AC1; Rep" FT CDS complement(1446..2489) FT /codon_start=1 FT /gene="AL1" FT /product="replication initiation protein" FT /note="RCR-initiator protein; rolling-circle replication FT initiator" FT /db_xref="GOA:H2E1I7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E1I7" FT /protein_id="AEX93202.1" FT /translation="MPLVPKRFIINSKNYFLTYPHCSLSKEETLEQLLRLSTPTNKKYI FT KIARELHEDGEYHLHVLIQFEGKFKTQNCRFFDLVSSTRSAHFHPNVQGAKSSTDVKSY FT VDKDGDTIEWGEFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKDKLPKEFLFQY FT HNLSSNLDRIFAKAPEPWVPPFPISSFTSVPDEMQEWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNDVEYNVIDDVTPQYLKMKHWKELIGA FT QKDWRSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLDKEENASLKAWTLHNAKFIFL FT NSTLYQA" FT gene complement(2072..2329) FT /gene="AL4" FT CDS complement(2072..2329) FT /codon_start=1 FT /gene="AL4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2E1I8" FT /protein_id="AEX93203.1" FT /translation="MGNIISTCLSSSKANSKRKIADSSTWYPQLGQHISIRTFRELSQA FT PTSSPMSTRMEIQSNGENSRSTGDLLEEVSKQLTTLPQRP" XX SQ Sequence 2632 BP; 649 A; 539 C; 618 G; 826 T; 0 other; accggatggc cgcgcttttt ttgaccggcc caagtgcttt ttttgacccg gcccaattgc 60 ggaaattgcg ttgtgtcttc ttacataaag ttagccaatc agcgcacgcg tgtgtagtct 120 aattgttaac aacttggcga ccaagttgtt ttgtggtcta taaatttgtc gttatgtgtg 180 tggtccagat atacagattt tgaaaatgcc taagcgggat gccccatggc gtttaatgtc 240 gggtacccct aaggttagtc gatcctcaaa ttatgtccct cctgatggat tgggccgtaa 300 atttgataag tcgtctgcct gggctaacag gcccatgtac agaaagccca ggatatatcg 360 gaccgtaagg tctgccgatg ttcctcgagg ctgtgaaggg ccttgcaaga ttcagtcgtt 420 tgagcagcgt cacgatatct ctcatactgg gaaggtgatg tgtatctctg atgttactcg 480 cggtaatggc attacccatc gggttggtaa acgtttctgc gttaagtccg tgtatatatt 540 agggaaggtt tggatggacg ataacattaa gctgaagaac cacactaaca gcgttatgtt 600 ctggctagtt agggatagga gacccagtgg aacggctatg gattttggtc acctcttcaa 660 catgttcgat aatgagccta gtaccgccac tgtgaagaac gatcttcgag atcgtttcca 720 agtgctgcac aggtttcatg cgaaggttac aggtggtcag tatgcaagca atgagcagac 780 gttggtgaag cgtttttggc gggtgaatca tcgtgttacg tataataatc aggaggcagc 840 tcggtatgaa aaccatacgg agaacgcctt aatgttgtat atggcatgta cgcatgcctc 900 taaccctgtg tatgctactc ttaagatccg gatctatttt tatgattcgg tgttaaatta 960 ataaatcttg aattttattg aataattctc aagtacatga tttacatatg atttatctgt 1020 tgcgaagcga acagctctga ttacattatt aatgcaaata acacctaacc tatctaaata 1080 caataagact aaatatttaa atctatttaa gtaattcgtc ccagaagctc gaactgatgt 1140 cgtccagatt tggtagttga ggtacgcttt gtgtagatgc aacgccttcc tgaggttgtg 1200 gttgaaccgt atttggatgt ggtatatcct ggtgtttgtg tgtattgggt tctctacact 1260 gagtatcgtg aaatagaggg gatttggtac ttcccagata aaaacggaac tctctgcttg 1320 ttccgcagtg atgctctccc ctgtgcgaga atccatggtt gacacaatcg atgtgctggt 1380 agaatgagca gccacagttt aggtctatcc tcttccgacg aatcctggat tttgcaatct 1440 tgtgcttagg cttgatagag ggtggagttg aggaagatga attttgcatt gtggagtgtc 1500 caggctttta atgatgcatt ttcctctttg tcgaggaaac ttttatagct ggctccctct 1560 cctggattgc agagcacgat tgatggtatc ccacctttaa tttgaactgg ctttccgtat 1620 ttgcagtttg atcgccagtc cttttgggcc ccaatcagct ctttccaatg cttcatcttt 1680 aaatattgtg gagtgacgtc atcaatgacg ttatactcca catcatttga gtaaacccta 1740 ggattgaaat ctaggtgtcc actcaaatag ttatgtgggc ctaaggcacg agcccacatt 1800 gttttccccg tccttgagtc accctcaatg attatactga taggtctttc cggccgcgca 1860 gcggcacccc taccaaaata atcatcagcc cattcttgca tctcgtccgg aacgctcgtg 1920 aaggaagaga ttggaaacgg aggaacccat ggttccggag ccttagcgaa tatcctgtct 1980 aggttactag acaggttgtg atactgaaaa agaaactctt tggggagctt gtctttaata 2040 attcgcatgg cttcttcctt cgaggaggca tttagggcct ctgcggcagc gtcgttagct 2100 gtttgctgac ctcctctagc agatctcccg tcgatctgga attctcccca ttcgattgta 2160 tctccatcct tgtcgacata ggacttgacg tcggtgcttg acttagctcc ctgaacgttc 2220 ggatggaaat gtgctgacct agttgaggat accaggtcga agaatcggca attttgcgtt 2280 ttgaatttgc cttcgaactg gataagcacg tggagatgat attccccatc ttcgtgcaat 2340 tctcttgcaa ttttaatata ttttttatta gtcggagtgc tcaaccgtaa tagttgctct 2400 agggtttctt ctttggataa agaacagtgt gggtatgtta gaaaataatt tttagaattt 2460 ataataaacc tctttggaac taagggcatt tttgtaaata ttgtaggtcg acccaattga 2520 gctctcttca aaaactctga ggaattgggt atattgggtc cttatttata ctagaaggtc 2580 ctatagaact ttcaatcgta tccgctcacg tggcggccat ccgtataata tt 2632 //