ID   JN545837; SV 1; linear; genomic RNA; STD; VRL; 1653 BP.
XX
AC   JN545837;
XX
DT   08-JAN-2012 (Rel. 111, Created)
DT   08-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Cassia yellow mosaic-associated virus RNA-dependent RNA-polymerase-like
DE   gene, partial sequence; and coat protein gene, complete cds.
XX
KW   .
XX
OS   Cassia yellow mosaic-associated virus
OC   Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus;
OC   unclassified Tymovirus.
XX
RN   [1]
RP   1-1653
RA   Nicolini C., Pio-Ribeiro G., Andrade G.P., Oliveira V.C., Resende R.O.,
RA   Kitajima E.W., Rezende J.A.M., Nagata T.;
RT   "Molecular characterization of a new Tymovirus infecting Cassia
RT   hoffmannseggii Mart. in Brazil";
RL   Unpublished.
XX
RN   [2]
RP   1-1653
RA   Nicolini C., Pio-Ribeiro G., Andrade G.P., Oliveira V.C., Resende R.O.,
RA   Kitajima E.W., Rezende J.A.M., Nagata T.;
RT   ;
RL   Submitted (03-AUG-2011) to the INSDC.
RL   Departamento de Agronomia, Universidade Federal Rural de Pernambuco, Av.
RL   Dom Manoel de Medeiros, Recife, Pernambuco 52171-900, Brazil
XX
DR   MD5; bc813dcf867ab4e729c8c48283e21378.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1653
FT                   /organism="Cassia yellow mosaic-associated virus"
FT                   /host="Cassia hoffmannseggii"
FT                   /isolate="TC1"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:1127492"
FT   misc_feature    <1..1080
FT                   /note="similar to RNA-dependent RNA-polymerase"
FT   CDS             1084..1653
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H2D5P2"
FT                   /db_xref="InterPro:IPR000574"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:H2D5P2"
FT                   /protein_id="AEX10524.1"
FT                   /translation="MTTNNHTLATQPPINTKSDVLPLQSGSPPPTISLPFQVLIASLGT
FT                   KDVSDSISIAANAAISALSSCFRHATLSSLRATIHPSAIAVSNPTTVSLVWVPANSTAT
FT                   PSQILNVFGGQTFCVGGAMQSTTPIDVPCNLSNVNPILKSSVTFSDTPKLLLESKTLAS
FT                   PPTSPTCTVTISGFVQLHSPLLQSSS"
XX
SQ   Sequence 1653 BP; 349 A; 608 C; 275 G; 421 T; 0 other;
     tgatccgatc cggactggcg ccacactgct gtgcgcattt tcgccaaaag tcggcacaag        60
     gtgaacgacg gctccatctt cgctccctgg aaagcttgtc aaaccttggc ccttatgcac       120
     gatttcgtca tcctctctct cgggccagtc aaaaaatacc aaagattttt cgactctgct       180
     gaccgcccag cccacctcta cacccattgt ggcaaaactc cagcccaact ttcttcctgg       240
     tgtaagaaac acctctcttc ccgcctcaag ctgaccaacg actacaccgc cctcgaccaa       300
     tcccagcacg gcgaaagcgt ggttttggaa gccctcaaaa tgaaacgctt gagcatcccc       360
     tcccacctca tcaacctcca catccacctc aagactaacg tcgccaccca attcgggcct       420
     ctcacttgca tgcgtctcac tggggagccc ggcacctatg acgacaacac cgactacaat       480
     ttggctgtct tgcactccca atttgacctc ggctctattc cagtcatggt gtcaggcgac       540
     gactccttaa tcgattccgt cccaaacacc ctcccaagct ggccttccat ttccaaactt       600
     ctccatcttc ggttcaagac cgaaacctca gcccatcctc tattctgtgg ctactacgtg       660
     gggcctgcag gctgctgtcg caatccctta gctctattcg ccaagttaat gattgctgaa       720
     gacgacggca gctcttccga taaacgactc agctacctca ctgagtttgc tcaaggccat       780
     tcccttggag attccctttg gtctctactt cccactcacc ttcaccccta ccaaagcgca       840
     tgcttcgact tcttctgccg ccactgcccc aagcatgaga aagcgatgtt gagccttgac       900
     ccactcgatc cttctctttt gcttaaagcc acttcttcca tcaagtggtt gtccaaaacc       960
     gcctatctct ctcttcctgc ttccatccgc ttggtcatct tccgcaaatc tcagtcttct      1020
     tctttcccag aagaccccgc tgtttcccaa ctagagtctg aattgcttca caccatgtga      1080
     agtatgacga ctaacaacca cacccttgca acccagcctc ccattaacac caagtctgat      1140
     gtcctccccc ttcaatctgg atctcctccc ccaaccatct ctttgccatt ccaagtcctc      1200
     atcgcttcac tcggcaccaa ggatgtgtcg gactccatca gcatcgcagc aaacgctgcc      1260
     atatcagctc tctcctcttg cttcagacat gccacccttt cttctctccg tgctaccatc      1320
     cacccctcag ccatcgctgt ctccaacccc acaactgtct cccttgtttg ggtgcccgct      1380
     aattccacag ccactccctc tcaaatcctc aacgtcttcg gggggcaaac tttctgcgtc      1440
     ggcggagcca tgcagtccac cacccctata gacgtccctt gcaatctctc caacgtcaac      1500
     cccatcctca agagctcggt caccttttcc gatactccga agctcttgct cgagtccaaa      1560
     actctcgcct ccccacctac ctctccaacc tgcactgtga ccatttctgg tttcgtgcag      1620
     cttcactcgc ctcttctcca atcctcctct taa                                   1653
//