ID JN427014; SV 1; linear; genomic RNA; STD; VRL; 7566 BP. XX AC JN427014; XX DT 15-NOV-2011 (Rel. 110, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Actinidia virus A isolate TP7-93A putative replicase (ORF1) gene, partial DE cds; and hypothetical protein (ORF2), movement protein (ORF3), coat protein DE (ORF4), and RNA-binding protein (ORF5) genes, complete cds. XX KW . XX OS Actinidia virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7566 RX DOI; 10.1007/s00705-011-1219-1. RX PUBMED; 22274622. RA Blouin A.G., Chavan R.R., Pearson M.N., Macdiarmid R.M., Cohen D.; RT "Detection and characterisation of two novel vitiviruses infecting RT Actinidia"; RL Arch. Virol. 157(4):713-722(2012). XX RN [2] RP 1-7566 RA Blouin A.G., Cohen D.; RT ; RL Submitted (02-AUG-2011) to the INSDC. RL Bioprotection, The New Zealand Institute for Plant & Food Research Limited, RL 120 Mt Albert Road, Sandringham, Auckland 1025, New Zealand XX DR MD5; b6ec17d34521ccc9509f35eefb8ed023. DR EuropePMC; PMC5999178; 29516247. XX FH Key Location/Qualifiers FH FT source 1..7566 FT /organism="Actinidia virus A" FT /host="Actinidia sp." FT /lab_host="Nicotiana occidentalis" FT /isolate="TP7-93A" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="2007" FT /db_xref="taxon:1112769" FT gene <1..5146 FT /gene="ORF1" FT CDS <1..5146 FT /codon_start=2 FT /gene="ORF1" FT /product="putative replicase" FT /db_xref="GOA:G8H9C9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:G8H9C9" FT /protein_id="AET36885.1" FT /translation="AASLMQNGSTVEVEQIKTLKTNRLLKSEKRSDGLFDYYISDFLRD FT YFAKKGVHTSVHSFQAHPHPCSKMIENHLLYNIVLTYATEKTLFVSCKASKIKHFLKIM FT KSNKKKGKGEVDLKNNLRYNRLVHAKDHYRYDNPHREFDLTHLPELRRLSRESETMVIH FT DELQYWSLFDFQSVLGQMEKVNRILYTIIYPAEIQAGHQHSLFPEAYQFEMRGSYFIWM FT PDGQADGAYKQPVNPWLLSTSKTIDSQERTWTICKLTTFGSHHVFSATLGSTITEDEYI FT YDDYTVIPPAVIMPGRRDYTHMQLRSRFVQAVLLYLMALKKPDASSAVAKMRQLTNGEE FT NAAEALFVAQIAKQLQEAKLYDSMGSFSLQEAIWNSLCGALGDSITYFMDKQKYKMMSM FT ERFIMGCGSAKISIQREFRDFHAQRDKLCPVIGASWTGVEDPEWEEIYLRNLQEQDVPG FT TSYNLHGEEIINRKELRSDLMVFCARLDLINNTGTVEEMNIEVLISPLDNFKALRLFII FT RIGPIRGLTSRGLPWQNDAIKRYEQGVIDAKRLEEIMFGVKRIERVSGKTLRTVQEGPA FT KCTTACTCGATITTFRADGLPNMEGFIESWCDKLKGRKACFYSRHSASYEYNGGNHQSA FT GWPEEIEEMAKKLNLDESYDHCLAQVYEAGSGIGYHADDEDCYNDPSVVTVNLKGEAVF FT KTKCTNELTFDLGAGDVLIMHKGFQKTHKHSVVSKTPGRVSLTFRNSIKQADSDSDHLS FT EYEETESPFDETLEILGKNIKSLCCLDRIAEHMGVSREVCASHIHAKMPRAVEEFKEGG FT MSISTLLQVLKQLDVAGYICSERGEVRTLGKFKEISLFASDDHIEPFPGEKGDCTFESA FT MDFNPDVSRVHFVVDQEKANHLSESFREGFTGISLNKFRGGVPRTTPQKFSREVHTLMG FT FAGSGKSYYPQTLLKGGAYKSSLVITPRKALASDWESKIAKGADVATFEVAFKVKKRFD FT NLIIDEIGLLPPGYIDLAILHFNPECVLLLGDPLQAEYHNKQDELFLAPITESIFSRLQ FT GKVNYLFKTHRLPRNQEIIEVPSKGELSPDYVGGAQKQRTADLILHASRSAKDKGAQGS FT STIGEAQGLSANAVRLEMDLDWGLISDQHFMVALTRARKSLQVNIKSELRKHLINTARS FT PFLKNFLQGKRITKAMLLAALNEKGMDVDFIEKEMRFADSDDMEDKLAGDPYLKGLLKL FT YQDVEMEEVEIIEPHLGEPQKTHLPISAHENEISVSLLKAKEHREVLTSAGITEQIDDE FT GYKGDTADPMTHKALYLHHKNSDVATFFLSVKKRLRFRDQERNTRKFNKCRGFGAQMFN FT ILKKTYKLQQPLQLPDLDRVETEFVKKRLNKSKNLIEKHSYRSDPDWPSNYLKVFLKQQ FT TCTKMEKRGVDAKAGQTIACFCHAVLCRFGVQLRRTEKALRAQLGPNVLIYSQLNYTDL FT DKWCKNFVPSMIGTDSDYEAFDRSQDEKILDFELEVLKFFLWPEELIEEYKCLKLMMGC FT SMGGLAVMRFSGEFGTFFFNTICNMAFTCLRYNINESTPVCYAGDDMYAPGALTLNKSY FT EHILDQLSLKAKVRVSTTPLFCGWRMSPYGIVKDPNLLLDRWKIAHRNGNLPNCMVNYA FT IEACYGYRLGEYLFDVNIDIDAQQELVRAIVKVKHLLPKAIGKLFSKDPTECFSDEEEA FT GLQVRCEGGLNTEAAQD" FT gene 5154..5813 FT /gene="ORF2" FT CDS 5154..5813 FT /codon_start=1 FT /gene="ORF2" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:G8H9D0" FT /protein_id="AET36886.1" FT /translation="MHNIYPRYKLNTTGTSQAVTLGYAKDETGGLIERFLNPELHGVTN FT KEEIKEEDVVEYIFLHAQFGFYSAKSVAEALQGNNYRRKYEAKLVNIICERRGLTNEAC FT VSYYLNRYVPDQTIAQWFSLFLQGKNPPVPTKGFKDELPWDFVLRERPGSLSVELNFNK FT SLNQTVTEGPNERVSELIREYDFDALGIRSWSVLTDPNKSSKGGNRYPGKARVQST" FT gene 5704..6597 FT /gene="ORF3" FT CDS 5704..6597 FT /codon_start=1 FT /gene="ORF3" FT /product="movement protein" FT /note="MP" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G8H9D1" FT /protein_id="AET36887.1" FT /translation="MTSMRSVSDLGQSSRTQTNRARGATDTLEKRVFKVPKGLKDAKQL FT KGALARNKVYDITLFEQIFPTCTLKSNIHEEIRIEEGCVDTNINLVSESVADGLDEEKE FT PYLHLGCVAVAIIPHGRNMSGRVDIKLEDQRFQEGKGILCHFQAELRNALSAFAQFPGY FT FVSTIDVKNGYALNLKIKASGMHMHDGTHPLSLQVYCIMKKCDESFEHRYALSALKPGA FT YQSILNTTQIEDVPIQYSRPPARTVEPDNEKTLIMPSVYEAINKLYPNHGKEYLKDGTN FT ESSDRGVGNLGGNLRN" FT gene 6515..7111 FT /gene="ORF4" FT CDS 6515..7111 FT /codon_start=1 FT /gene="ORF4" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8H9D2" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:G8H9D2" FT /protein_id="AET36888.1" FT /translation="MAKNISRTAQMRVAIEELVTSGVTFATDAKDAGMDRMMYLRTLFG FT YIALNGTSRKTIHYGEVDVIGNKLGGEGIDSRGKINVGNLVRAMVSFARITPEGPAKGA FT TLRQMCEPFAEEARECLAILASKGAYSQLASKLTKLGQKEPQVMFDFNSGLDLAKLSAT FT EASTIQALNSRLFRTEGAKNVFTAQSSVGEQAVEI" FT gene 7112..7429 FT /gene="ORF5" FT CDS 7112..7429 FT /codon_start=1 FT /gene="ORF5" FT /product="RNA-binding protein" FT /db_xref="UniProtKB/TrEMBL:G8H9D3" FT /protein_id="AET36889.1" FT /translation="MDDPSFLTGRSTYALKRRRKKLGICKCGTMFAEHPKNCRKQAISD FT HKLKRLEWVSKGRVTSSETLYPLFNFWVGNAYGLCEHTFEILNKCYCVECLCDRIDLLE FT C" XX SQ Sequence 7566 BP; 2340 A; 1714 C; 1896 G; 1616 T; 0 other; agccgcctcc ctcatgcaga acggatctac ggtcgaagtt gaacaaataa aaacactcaa 60 aacgaacagg cttcttaaga gcgaaaaacg cagcgatggt ctcttcgatt attacatcag 120 tgatttcctt agagattatt tcgcgaagaa gggtgtacac accagtgtgc acagtttcca 180 agctcacccc cacccctgtt ctaagatgat tgagaatcat ctactttaca acatagtgtt 240 aacgtacgca acagagaaga ccctcttcgt aagctgcaaa gcttcgaaga tcaagcactt 300 cctgaagatt atgaagagca acaaaaagaa gggtaaaggt gaggtagatt tgaagaacaa 360 tctgagatac aatcggttgg tacacgcaaa agaccactac aggtacgata accctcaccg 420 cgaattcgac ttgacacatc tccctgaact caggcgttta agtagggaaa gcgagaccat 480 ggtcatccac gacgaattac aatactggtc tcttttcgat ttccagtctg ttctgggaca 540 gatggaaaag gttaacagga tcctgtacac aatcatctac ccagccgaga tacaagcggg 600 gcaccaacat tccttatttc ccgaagcgta ccaatttgaa atgaggggtt catattttat 660 atggatgccg gatggtcaag cagatggggc ctacaagcaa ccggtgaatc catggctcct 720 gagtacaagc aaaacaatcg atagtcaaga aagaacatgg acgatttgta agttaaccac 780 gttcggctcc caccatgtct tctctgcaac cttagggagc accatcacgg aggatgagta 840 catctatgat gattacactg tcatccctcc agccgtaata atgcctggac gaagagatta 900 cacccacatg caactccgga gccgtttcgt gcaggcagtc cttctctacc tgatggcttt 960 aaagaaacca gacgcctcct ctgctgtagc aaaaatgagg cagttaacta acggggagga 1020 gaacgccgcg gaggcactct tcgtagctca aatagccaaa caacttcaag aagcaaagct 1080 ctacgattcc atgggatctt tctctctgca agaggcgata tggaacagct tatgtggcgc 1140 cctcggtgat tctatcacgt acttcatgga taaacagaaa tacaaaatga tgagcatgga 1200 gaggttcatc atgggatgcg gcagcgcaaa aataagcatt caaagggaat tccgcgattt 1260 ccacgcgcaa agggacaagt tatgcccggt catcggggca tcatggaccg gagtggagga 1320 cccggaatgg gaagagattt acctgcgaaa tctacaagaa caagatgtcc ctggaacgag 1380 ttacaatctc cacggagagg agatcatcaa taggaaagag ttaagaagtg atctcatggt 1440 cttctgcgcc agattagatc taattaacaa caccgggacc gtagaagaaa tgaacatcga 1500 ggtgttgata agccccttgg acaacttcaa agccctcaga ctcttcatca tcagaatagg 1560 accaatccgc ggcctgacct cgcgaggctt accctggcaa aatgacgcca tcaaaaggta 1620 cgagcaagga gtaattgacg cgaaacgtct ggaggagata atgtttgggg tcaagcgtat 1680 cgagagggtc tcagggaaga ctttgagaac cgttcaggag ggacccgcca aatgtacgac 1740 cgcttgcact tgcggtgcaa ccataaccac gttcagggcg gacgggttgc caaacatgga 1800 ggggttcata gagagctggt gcgataagct aaaagggaga aaagcctgct tctatagcag 1860 acatagcgcc tcatacgaat acaatggagg gaaccaccaa agtgccggct ggccagaaga 1920 aatcgaagaa atggcaaaga agctgaacct ggatgaatca tacgatcact gcttagcaca 1980 ggtgtacgaa gctggctctg gtatagggta tcacgctgat gacgaggact gctacaacga 2040 tccatccgtg gtcaccgtga acttgaaagg agaggcagtc tttaagacca aatgcaccaa 2100 cgagctaaca ttcgacctgg gtgctggtga tgtgctaatc atgcacaaag ggtttcagaa 2160 aactcacaag cactcagtgg tctcaaaaac cccaggtcgt gtgagtctca cattcagaaa 2220 tagcataaag caagcagact cagactcgga tcatctatca gagtacgagg agaccgaatc 2280 ccctttcgac gagactctag agatactcgg aaagaacatc aaatcactct gttgccttga 2340 tcggatagcg gaacacatgg gggtatcacg agaggtgtgt gcaagtcata tccatgcaaa 2400 gatgcccaga gcagtagaag agttcaagga gggcggaatg agcatcagca cactactgca 2460 ggttctaaag cagctagatg tagctggcta tatctgctca gagcgtggag aggtccggac 2520 tctcgggaaa ttcaaggaga taagcctttt tgcctccgac gatcacatcg aaccattccc 2580 tggagagaaa ggggattgca cctttgaatc ggcaatggac ttcaatccgg atgtcagccg 2640 cgtgcatttt gtagtggacc aggaaaaggc taaccatctc agcgaatcat tcagagaagg 2700 tttcaccggg ataagtttga acaaattccg tggaggcgtc ccaagaacaa cgccgcagaa 2760 attctcaagg gaggtgcaca ccctcatggg tttcgcaggc agcggtaaga gctattaccc 2820 gcaaacgcta ctcaaaggcg gcgcatacaa atcaagcctg gttatcaccc ctaggaaagc 2880 tctagcttcg gattgggaga gcaaaatagc aaaaggggcc gatgtcgcca cattcgaggt 2940 ggcgttcaag gttaagaaga ggttcgataa cctcatcata gatgagattg gtttactacc 3000 tccgggctac atcgatttgg ccatattaca ctttaaccct gagtgcgtgc tactacttgg 3060 ggaccctcta caggcagaat accacaacaa gcaagatgag ctctttttgg ccccgatcac 3120 cgagagtata ttttcgcgat tgcaaggcaa ggtgaattac ctctttaaaa cccatagatt 3180 accgaggaac caggagatta tagaggttcc atcaaagggc gagttgagcc cggattacgt 3240 tgggggagcc cagaaacaaa ggactgcaga tctcattcta cacgcctcaa ggagcgcaaa 3300 agataaaggg gcccaaggta gtagcaccat aggtgaggct caagggctga gcgcgaatgc 3360 agtccgatta gagatggacc tggattgggg cttgattagc gaccagcact tcatggtagc 3420 gctcactcgg gccagaaaaa gcttacaagt gaacattaag agtgagctgc gcaaacatct 3480 catcaacacc gcccgctccc ccttcctcaa aaatttcctc caaggaaaaa ggatcaccaa 3540 agctatgcta ctcgcggctt taaatgaaaa aggaatggac gtggacttta ttgagaaaga 3600 aatgaggttc gccgattctg atgatatgga ggacaaattg gcaggtgacc cttatctgaa 3660 aggtttactc aagctctacc aagacgtgga aatggaggag gtcgaaatca tcgagccaca 3720 tctgggagaa ccacagaaaa cacatctccc cattagcgca cacgagaatg agattagcgt 3780 tagcctactg aaggctaaag agcatagaga agtgctaaca agtgcgggga taaccgaaca 3840 gatcgacgat gaggggtaca aaggggacac ggcagacccg atgacccaca aggctctata 3900 tctgcaccac aagaacagcg acgtggccac gtttttcttg tctgtcaaga aaaggttaag 3960 gttcagggat caagagagga acacaaggaa gttcaataag tgccgtggat tcggtgcaca 4020 aatgtttaac atcttgaaga aaacctacaa attgcaacaa cccctgcagt tacccgatct 4080 ggatagagtg gagacggaat tcgtgaagaa aagattgaat aaatcaaaga acctgatcga 4140 aaaacattct tacagatcag acccggattg gccgagtaat tatctgaaag tgtttctgaa 4200 acagcaaacc tgcacaaaaa tggaaaaacg tggggtggac gcgaaagctg gtcaaaccat 4260 cgcttgtttc tgccacgccg tgctgtgtag attcggagta caactgagaa gaaccgagaa 4320 ggctctccgg gcgcagctgg gacccaacgt tttgatctac tcccaactaa attacacaga 4380 tcttgataag tggtgcaaaa acttcgtccc atccatgata ggaaccgact ccgattacga 4440 ggcgttcgat cgatcgcaag acgaaaaaat cctagatttc gagttggaag ttctcaaatt 4500 ctttttgtgg cctgaggagt tgatagagga gtacaaatgc ctgaaactga tgatggggtg 4560 ttctatgggt ggcttggcag tgatgagatt ctctggtgaa tttggaacat tcttcttcaa 4620 cacgatttgc aacatggcgt tcacatgcct aaggtacaac atcaacgaga gcacccctgt 4680 ctgttacgct ggtgacgaca tgtatgctcc cggcgccttg accctgaata aatcttacga 4740 acacatctta gaccagctga gtttgaaggc caaggtcagg gtaagtacca cccccctctt 4800 ttgtgggtgg agaatgagtc cctacggtat cgtgaaggat ccaaacctcc tgctagatag 4860 atggaagata gcgcacagga acgggaacct tcccaactgc atggttaact acgccatcga 4920 agcgtgttac ggttacagat taggtgagta ccttttcgat gttaatattg atatcgatgc 4980 gcagcaggag ttggttagag caatcgttaa agtaaagcac ctgctcccga aggcaatagg 5040 gaagttgttc tcaaaggatc ccaccgagtg cttctctgac gaagaggaag cagggttgca 5100 agtgcgctgc gaaggaggac tcaatactga agctgcacag gattaaccaa aaaatgcaca 5160 acatttaccc tcggtacaag ctcaacacca ccgggacgag ccaggcggtt accctagggt 5220 atgccaagga cgaaacaggg ggcctaattg aacgattcct aaacccagaa ttacacgggg 5280 ttacaaacaa agaggagatc aaagaagaag atgtggtgga gtacattttc ctgcatgcac 5340 aattcgggtt ctattcagcc aaatccgttg cagaagccct acaaggtaac aattaccgca 5400 ggaaatatga ggctaagctc gtaaatatta tttgcgaaag gagaggtcta actaacgagg 5460 cttgtgtgag ctattatcta aaccgttacg tgcctgacca aacaatcgcg cagtggttca 5520 gcttattctt acaagggaaa aacccaccag taccaacgaa gggtttcaaa gatgaattac 5580 cgtgggactt cgtgttacgg gaacgaccag gctcattaag tgtggagcta aatttcaata 5640 aatcactgaa ccaaacggtc acagaagggc ctaacgaaag agtttcagag ctaatcagag 5700 aatatgactt cgatgcgctc ggtatccgat cttggtcagt cctcacggac ccaaacaaat 5760 cgagcaaggg gggcaacaga taccctggaa aagcgcgtgt tcaaagtacc taagggacta 5820 aaagacgcta aacagctcaa gggggcatta gccagaaata aagtgtacga tataaccctg 5880 tttgagcaaa tcttccccac atgcacccta aaaagcaata ttcacgaaga aatccgcata 5940 gaagaagggt gcgtggatac caatatcaac ctggtgtctg agagcgtcgc ggatgggctt 6000 gatgaggaga aggaaccgta cttacaccta gggtgcgtag ctgtagccat catcccacac 6060 gggaggaaca tgtccgggcg cgtagatatc aaactcgaag atcagagatt ccaagaaggt 6120 aagggaattc tgtgccactt ccaagccgag ctacggaatg cactcagcgc gttcgcacag 6180 ttccccggtt acttcgttag cactatcgat gtcaagaacg gttacgccct gaacttgaaa 6240 atcaaagcaa gcggtatgca catgcacgac ggtacacacc cgttatcact ccaggtgtac 6300 tgcataatga agaagtgcga tgaatcgttc gagcataggt atgccctttc tgctctaaaa 6360 ccgggtgcct accaatcaat cctcaacacc actcagatcg aggacgtccc catccagtac 6420 agccgaccgc cagcaagaac ggttgaaccc gacaatgaga aaacgctgat tatgcctagc 6480 gtgtatgaag caataaacaa actgtaccca aatcatggca aagaatatct caaggacggc 6540 acaaatgaga gtagcgatcg aggagttggt aacctcgggg gtaaccttcg caactgatgc 6600 caaagacgca gggatggacc gaatgatgta tctccgtaca ttattcggct acatagcatt 6660 aaacggtact tctaggaaaa caatccacta cggagaagtg gacgttatag gtaataagtt 6720 aggcggtgag ggcatagata gcagaggaaa aataaatgta ggtaatttag ttagagctat 6780 ggtcagtttc gctagaataa cacctgaagg cccagccaaa ggtgccaccc tgagacagat 6840 gtgtgagcca ttcgcagaag aagcaaggga gtgcttagct atcctggcta gtaaaggcgc 6900 ctattcacaa ttggctagta agttgacgaa gctaggacag aaagaaccgc aggtgatgtt 6960 cgatttcaac tccgggttgg atctggcaaa actttcggct acagaagcaa gcaccatcca 7020 agcgctcaat agtcgcctct ttcgcacaga aggtgcaaag aacgtattca cagcacaatc 7080 tagcgtcggc gaacaggctg ttgaaatata gatggatgac ccatcatttc tcacgggtag 7140 gagtacgtat gcactaaagc gtaggagaaa gaagttaggg atatgtaagt gtgggaccat 7200 gttcgcagag catccgaaga actgccgcaa acaggctata agcgatcaca agctaaagag 7260 gttggaatgg gtgagtaaag gaagagtaac gtcaagtgag actctttacc cccttttcaa 7320 cttctgggtc ggcaacgctt atggtctctg tgagcacacc ttcgaaatac taaataaatg 7380 ctactgtgtg gagtgtctgt gtgataggat agatctacta gagtgttaat ggcatttcaa 7440 cgcctcaaag tgttcgcttg cataccgtac gaatagtatg caccagtgac gggaactgga 7500 ttaataataa atatctaccc gccccagaag tacctaactg aaggggaaag acgcgtgaat 7560 aaacac 7566 //