ID JN176565; SV 1; circular; genomic DNA; STD; VRL; 2767 BP. XX AC JN176565; XX DT 27-NOV-2011 (Rel. 110, Created) DT 29-JAN-2013 (Rel. 115, Last updated, Version 3) XX DE Tomato leaf curl Joydebpur virus clone NKJ1 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl Joydebpur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2767 RX PUBMED; 22918555. RA Tiwari N., Singh V.B., Sharma P.K., Malathi V.G.; RT "Tomato leaf curl Joydebpur virus: a monopartite begomovirus causing severe RT leaf curl in tomato in West Bengal"; RL Arch. Virol. 158(1):1-10(2013). XX RN [2] RP 1-2767 RA Tiwari N., Sharma P.K., Malathi V.G.; RT ; RL Submitted (23-JUN-2011) to the INSDC. RL Advanced Centre for Plant Virology, Division of Plant Pathology, Indian RL Agricultural Research Institute, Krishan Marg, New Delhi, New Delhi 110012, RL India XX DR MD5; aaee3c743c0743968c9ccbd5e9a7575d. XX FH Key Location/Qualifiers FH FT source 1..2767 FT /organism="Tomato leaf curl Joydebpur virus" FT /segment="DNA-A" FT /host="tomato" FT /mol_type="genomic DNA" FT /country="India:Kalyani, West Bengal" FT /isolation_source="leaf" FT /collection_date="2008" FT /identified_by="Neha Tiwari" FT /clone="NKJ1" FT /db_xref="taxon:309390" FT gene 148..510 FT /gene="AV2" FT /note="viral movement" FT CDS 148..510 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="viral movement" FT /db_xref="GOA:G9FLS9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G9FLS9" FT /protein_id="AET87473.1" FT /translation="MWDPVNDFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLI FT SVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQE FT AQDVQDVQKPRCAEGM" FT gene complement(283..573) FT /gene="AC5" FT CDS complement(283..573) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="GOA:G9FLT0" FT /db_xref="UniProtKB/TrEMBL:G9FLT0" FT /protein_id="AET87474.1" FT /translation="MTLPMCWTSCRDSKDWTLHGPSHPLGTSGLLYILYILGFLFMGLF FT AHAFALVTRTMGAAARLEYGLSKLRRRRTFEAGVEMIISAGRFDIISSPDD" FT gene 305..1075 FT /gene="AV1" FT CDS 305..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="encapsidation and vector transmission" FT /db_xref="GOA:G9FLT1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G9FLT1" FT /protein_id="AET87477.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1078..1482) FT /gene="AC3" FT CDS complement(1078..1482) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:G9FLT2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G9FLT2" FT /protein_id="AET87478.1" FT /translation="MDSRTGELITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINN FT VIRAVDHVLWNVIAHTIHVQQWYAIKYNIY" FT gene complement(1223..1627) FT /gene="AC2" FT /note="transactivator protein" FT CDS complement(1223..1627) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="TrAP" FT /db_xref="GOA:G9FLT3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G9FLT3" FT /protein_id="AET87479.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRIAKKGTRRRRVDLDCGCSYFIALR FT CHDYGFTHRGTHHCSSGREWRVYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1530..2615) FT /gene="AC1" FT CDS complement(1530..2615) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiation protein" FT /note="Rep" FT /db_xref="GOA:G9FLT4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G9FLT4" FT /protein_id="AET87475.1" FT /translation="MPPPKRFQIYAKNYFLTYPQCSLTKEDALSQLQNINTPTNKLFIR FT VSHELHENGEPHLHVLIQFEGKIQVQNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKAYV FT EKDGDFVDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLSANLDRIFTPPLEVYVSPFSSSSFDQVPDELEEWAAENVVRAAARPLRPVSVVVEGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQDSQEGDQASSR" FT gene complement(2165..2464) FT /gene="AC4" FT CDS complement(2165..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /note="suppressor of PTGS" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G9FLT5" FT /protein_id="AET87476.1" FT /translation="MKMGNLICTSSYSSKVKFKCKTTDSSTSFPLPGQHISIRTFRELK FT ARRMSRPMWKKTETSLILEFSRSMEDRLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2767 BP; 745 A; 591 C; 653 G; 778 T; 0 other; accggatggc cgcgattttt ttgtaatgtg ggccccacca cacacgtgct gacaaggaca 60 gttggaccaa ttagaaacgc cgctcaaagc ttaattgttt cgtggtcccc tatataaact 120 tgggctccaa gtagtgcact cataccaatg tgggatccag taaacgactt tcctgaaacc 180 gttcacggtt ttaggtgtat gctagccgtt aaatatcttc agctagtaga aaagacgtat 240 tctccagaca ctctcgggta cgatttaatc cgggatttaa tttcagtcat cagggctaga 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccgtctcaac ttcgacagcc catattccag ccgtgctgct gcccccattg tccgcgtcac 420 caaagcaaaa gcatgggcga acaggcccat gaacaggaag cccaggatgt acaggatgta 480 cagaagccca gatgtgccga ggggatgtga aggcccatgt aaggtccagt cttttgagtc 540 tcgacatgat gtccaacaca taggtaaagt catgtgtgtc agtgatgtta cacgtggaac 600 tgggctgacc catcgagttg gtaaaaggtt ttgtgttaag tccgtctatg ttctgggcaa 660 gatttggatg gatgagaaca tcaagaccaa gaatcacacg aatagtgtta tgtttttcct 720 tgttagagat cgtaggcccg tagataagcc ccaagacttt ggtgaggtat tcaacatgtt 780 tgataatgag cccagtacgg cgactgtgaa gaacgtgcat cgtgacaggt atcaggtgct 840 caggaagtgg catgcaactg tgactggtgg tcaatatgca tcgaaggagc aagcactcgt 900 gaagaagttt attagggtta acaattatgt tgtgtataac cagcaagagg ctggcaagta 960 tgagaatcat agtgagaatg cgttgatgtt gtatatggcg tgtacccacg cctctaaccc 1020 tgtgtatgcg acgttgaaga tacggatcta tttctacgac tctgtaacca actgaaatta 1080 ataaatatta tattttattg cataccattg ttgtacatga attgtgtgtg ctattacatt 1140 ccataataca tggtcgactg ctctaattac attgtttata ctaattacag caaaattatt 1200 taaaaactgc aacacttggg tcctaaatac ccttaagaaa tgaccagtct gaggctgtaa 1260 ggtcgtccag attcggaagg ttagaaaaca tttgtgtatc cccaacgctt tcctcaggtt 1320 gtgattgaac cgtatctgca cggtgatgat gtctcggttc ctcaggaatg gcctgttgtg 1380 gtgctcggtt atcttgaaat ataggggatt tgttatctcc cagataaaca cgccattctc 1440 tgcctgagct gcagtgatga gttcccctgt gcgtgaatcc atagtcgtgg cagcgtaatg 1500 cgatgaaata tgaacagccg cagtctaggt caacgcgacg acgcctggtc cccttcttgg 1560 ctatcctgtg ctgcactttg attggaacct gagtagagtg ggccttcgag ggtgatgaag 1620 gtcgcattct tcaaagccca atttttgagt gcgctatttt tctcttcatc caagaactct 1680 ttatagctgg agttgggtcc tggattgcag aggaagatag cgggaatgcc acctttaatt 1740 tgaactggct ttccgtattt tgtatttgat tgccagtccc tttgggcccc catgaattct 1800 ttaaagtgct ttaggtagtg gggatcgacg tcatcaatga cgttgtacca ggcgtcatta 1860 ctgtagacct tagggctaag gtctagatga ccacacaaat agttgtgtgg acccaacgac 1920 ctagcccaca ccgtcttccc cgttcgacta tcaccctcta ccactacact tacgggtctt 1980 aatggccgcg cagcggcacg caccacgttc tccgcagccc attcctcaag ttcatcggga 2040 acttgatcaa aagaagaaga agaaaaagga gaaacataaa cctccaaggg aggtgtaaaa 2100 atcctatcta aatttgcact taaattatga aactgtaata cataatcttt gggagctttc 2160 tcccttaata tattgagggc cgcagctttg gaccctgaat tgattgcctc ggcatatgcg 2220 tcgttggcag actgctgacc tcctctagcc gatcttccat cgatctggaa aactccaaaa 2280 tcaacgaagt ctccgtcttt ttccacatag gccttgacat ccgacgagct tttagctccc 2340 tgaatgttcg gatggaaatg tgttgacctg gtaggggaaa cgaggtcgaa gaatctgttg 2400 ttttgcactt gaattttacc ttcgaactgt atgaggacgt gcagatgagg ttccccattt 2460 tcatgtaatt cgtgagaaac ccggatgaat aatttattag taggggtgtt tatgttttga 2520 agttgggaaa gtgcatcctc tttagtgagg gaacactgtg gataggttaa gaaataattt 2580 ttagcatata tttgaaaacg ttttggagga ggcatgttga cttggtcaat cggtactcaa 2640 caaacttggc tatgcaatcg gtgaatggta ctcaatatat agtgtgagta ccgaatggca 2700 tgttcgtaat tttgaaagaa aattcaaaat tcaaaatccg acaaaagcgg ccatccgcac 2760 taatatt 2767 //