ID   JN107639; SV 1; linear; genomic RNA; STD; VRL; 1350 BP.
XX
AC   JN107639;
XX
DT   07-NOV-2011 (Rel. 110, Created)
DT   07-NOV-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Raphanus latent virus isolate NZ segment RNA 3 movement protein gene,
DE   partial cds; and coat protein gene, complete cds.
XX
KW   .
XX
OS   Raphanus latent virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus; unclassified Ilarvirus.
XX
RN   [1]
RP   1-1350
RA   Clover G.R.G.;
RT   "Detection of a new Ilarvirus infecting wild radish in New Zealand";
RL   Unpublished.
XX
RN   [2]
RP   1-1350
RA   Perez-Egusquiza Z.C.;
RT   ;
RL   Submitted (10-JUN-2011) to the INSDC.
RL   Plant Health and Environment Laboratory, Ministry of Agriculture and
RL   Forestry, 231 Morrin Road, St. Johns, Auckland 1140, New Zealand
XX
DR   MD5; b9cbc03f9e9b29278aed5121da5d244b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1350
FT                   /organism="Raphanus latent virus"
FT                   /segment="RNA 3"
FT                   /host="Raphanus raphanistrum"
FT                   /isolate="NZ"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collected_by="Ross Beever"
FT                   /identified_by="Zoila Perez-Egusquiza"
FT                   /db_xref="taxon:1108495"
FT   CDS             <1..426
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:G8G3F9"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:G8G3F9"
FT                   /protein_id="AER57899.1"
FT                   /translation="GMWYPFWSEKISKRQLYQKTTAVTSTLAMETYAKAVIKSDAEMRA
FT                   LMMSYASVDNAAKAHEKLVTCSKTMNLLESGSTGIDFTVKQLPERSAESLDDTDRNVEV
FT                   SGVTDRKVDVLIPRFSSKLEERNGQVTGNPPKGGFLT"
FT   CDS             619..1281
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:G8G3G0"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:G8G3G0"
FT                   /protein_id="AER57900.1"
FT                   /translation="MSSSRGVRSVNRCPTHVDELDCSANNCRWTPAGSVNARQRRNARR
FT                   AATFRNNQAASVPLPVPVRVTQAPPRPDFRLPNGQVWVRRNPTEFAAKGDDADDAVKVG
FT                   TLIDAIPEINADTKLYRVLVGFVAVSDGIFAFVRDVGDDIPNLPVVGRVGFTRQTYRSR
FT                   SISLNGAVASDCRNHAFLWSLNDHKRDARRVVTADYWFAISKPAMLMPPEDFLENSN"
XX
SQ   Sequence 1350 BP; 352 A; 289 C; 361 G; 348 T; 0 other;
     gggatgtggt atccgttctg gtctgaaaag atcagtaaac ggcaactata ccagaaaacg        60
     acggcagtta ccagcacttt ggctatggaa acgtatgcca aagcagtgat aaaatctgat       120
     gctgagatga gagctcttat gatgagctat gcctcagtag ataatgcagc caaagctcat       180
     gagaaattag taacctgttc caagacaatg aatttgttgg aatcgggctc caccgggatt       240
     gattttacgg tgaaacagct accagaaaga tctgctgagt ctctagatga taccgacagg       300
     aatgttgagg tgtctggagt taccgaccgt aaggtcgacg ttttaatccc gagattttcg       360
     tccaaactcg aagaaagaaa tggtcaagtt accggtaatc cacctaaagg tggttttctt       420
     acttagatgt aaaagaaact gatctcatgt ggacatcaag ggatttggat gttgggaagg       480
     ggtcccagta ctaggtctga gtattaagtg agtgaattct ctggtgtgag ataagccgct       540
     tcttggactt acctggatcg tacgagattt taagacactg actcgcctac caaatttcct       600
     gcctaatcag cctacgtgat gtcttcaagc cggggagtga gatcagttaa ccgatgccca       660
     actcatgttg atgagttgga ttgttcagca aataactgca ggtggactcc tgcaggttcc       720
     gtgaacgccc gtcaaaggcg taatgcacga agggccgcga cgttccgcaa caatcaagct       780
     gcgagtgtac cgctgccagt accggtgaga gtgactcagg ctccaccgag gccggatttc       840
     aggttaccaa acggtcaagt gtgggtccgt aggaacccca ctgaattcgc cgcgaaaggc       900
     gatgacgcgg atgatgccgt caaggtgggt accttgatag atgctatacc cgaaatcaac       960
     gcggacacga aattatatcg tgtccttgtt ggtttcgttg ccgtaagtga cggcatcttt      1020
     gcttttgtgc gggatgtcgg tgatgatatc ccaaacctac cagttgttgg tagggttggg      1080
     tttaccaggc agacctaccg ttcgagaagt atttccttga acggtgcggt cgcctcggat      1140
     tgtcgaaacc acgcgtttct gtggtcgttg aatgatcaca agagagacgc gcgtcgagtg      1200
     gtgacggcgg actattggtt cgccatctcc aaaccggcga tgttgatgcc tccagaagat      1260
     ttcctggaga atagtaattg actatttagt caattatcca acttggttga tgccacttat      1320
     agtgatgaca gtgtttccga tcctgagaac                                       1350
//