ID JN104386; SV 1; linear; genomic RNA; STD; VRL; 7905 BP. XX AC JN104386; XX DT 29-FEB-2012 (Rel. 111, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Cherry leaf roll virus isolate Olm1 segment RNA1, complete sequence. XX KW . XX OS Cherry leaf roll virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7905 RX DOI; 10.1007/s00705-011-1208-4. RX PUBMED; 22218961. RA Eastwell K.C., Mekuria T.A., Druffel K.L.; RT "Complete nucleotide sequences and genome organization of a cherry isolate RT of cherry leaf roll virus"; RL Arch. Virol. 157(4):761-764(2012). XX RN [2] RP 1-7905 RA Eastwell K.C., Mekuria T.A., Druffel K.L.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Plant Pathology, Washington State University - IAREC, 24106 North Bunn RL Road, Prosser, WA 99350, USA XX DR MD5; 89ba1f6da52051f90d702c87f2f5b558. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..7905 FT /organism="Cherry leaf roll virus" FT /segment="RNA1" FT /host="Prunus avium (Bing sweet cherry)" FT /isolate="Olm1" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:12615" FT CDS 13..6354 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:H6D9G5" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:H6D9G5" FT /protein_id="AFB82733.1" FT /translation="MVRPIVFSNGESVLPKALISEAKMVAAFLKSTRNPAGFWVTFLAQ FT GTSLTPSQVALCAINGLVSRQTVEIHSHGPSAEVFWSALQARLRSFLRAHRQRVTSLLA FT LCCEAYEARDLCRYQRQRAAYLARGAACRAKALRKKKTALRKERAAQLAQRQLEGERRA FT AARRARLARKGQQVLRRRLAALFSPPLPFPTSEWAWEPLPSSPLPAFRDFFTSPLLEVE FT APWSPPMGPVGFNKSTPQALYCAVRARLSTFSKSTGSLFPMVSFDRLVPGHLMMFQLMH FT RLVAAYSACPVLSLIEDGLNSLLNGCHYLQVFKEMMISASQVVHKLTGNSHSAMTVQAG FT FGISNFFRGIGTSLATGFSDGLISKAIDTKDVIVDGINWVADKTVGAFVRALRDQFSDT FT VGKYLNVLSEYKAQIENFWAWAIRWSRNLMDKVDVSLRALQGSAFFAAALVILGGLVFL FT VENLLPTGMTGLPVGGLSSLFVGGALLFWCGKELFQSEKIMNIRLAIIAMAERMFVKPK FT SKPSPTGMGLQGGLSDIFGVPLSVMESIGSGLCGSALSSMTYVGKFGQAMDNIRKGVMC FT MRQFLGWMLEQLAELYDNVSGRKVAFFRELATLAQVDVEKWIVDVQEFLLVAEVAPEGD FT RVILDTVLLLLQKGQTIQRLLCQTKQGTSFNYGRLVATLVKSLDDVYTKYSKAGRRVMY FT RFVPFWAYFFGKARTGKTIFANNFKNTMVQYLGTTSENIFYKNARDQFWPKYRQQAIVI FT VDDLSSVENLPSLESEFIQLMSTMPYGLNMAAVDEKGSEFNSKMVITTSNKFDAPSHAK FT IHDLDAYRLRRHACVEVRRVPDAIFDAKNPYLSSEARFVNNCDQAPEGEWMAMEQMQEE FT LIARYQKHHEAQADEYNFWKRNARSTHDVFDILEEKIREEGFWLSSAEFCMPDKEAQGI FT RATDRFIGIDGKIIKYDPLNFVGEYYKGSHLAKSAQDLENMALARYHEFADLMAAWSVN FT GVVKQFMEQLLTGPTHIDSIDLLGKEALPSHREFFDSLTLPKRAVLRLIQKKVDAIKAG FT PAFEFVPEKGFTLAKVLKEGYEYVYNNGGKIFLIFAAVVILWFLCGTAMHLIRQIFCGG FT VGAGSAGAMARMSVQSTIPSGSDVNSFASRNLRRVYRPTRLGLQSAMNPVETVSQAEQL FT MAWIETPEGNLISCCRFKSRALALTYHQARSIAPGSKIFISYMTAAGTPSVPIEHIWDP FT QETSQVPNLRRFNDTEVCVYTHPQLSPLPGPLESMFVEDMQAGATLYHVEGRVMKLVRD FT SHDYLPTDFVGAPEEIVPHVWSGVVHLNTHAVTIDNYTWGGDYKVNVPRSLVGTYPNSV FT EDCGGLLFSKIHGSYKVIGMHVAGERLADGSYLSAAALFPRPSLFISAQSGLRTLQIEA FT GKDTRGVSKVGFIKAEEIPRAPRKSSFVEVEPELKVPVPAGVPLKQIAILSSSDERLKG FT TQFEGYDPLRQATVKCEDPMFDLKSDVLEEVCRDIEETWFDCAPSLSLLSNEEMVNGND FT EEIFLDAIVQTTSEGYPYVLERGPGEKGKERYLEQDPNLPEGKLRVRPGTSVHRDLLAL FT ETSIHTTIPILIGMEIPKDERLKESKILTPATRTFTVLPMPYNLLLRKFFGRFTAFLQG FT NRHRLPCAVGVNPYSNEWTRIFDGLAQMSPKALNGDYKSFDGKLNFQMYDAIARLLGRV FT HRDESTSQARYNLIMAMYARYSLCGSQVYEVRAGLPSGCAITVIMNSIFNEILIRYAYR FT VSVGPILRNRFNHFVKLVVYGDDNLIAVDPQLASGTFVGYEGGKMVVTDIFDGATIQKV FT LRDVNITITDGSDKSAKEWHFKPLESLDFLKRGFKRMADGRVLAPLDLSAIFSSLHVVR FT PEQGSTAAAVNINARVALRELWWHQDETLFNMVRSFFQRHNFVDLPNWRECRDFHQSQY FT TEWHPFKEYKFLEMPLPEQENREFMLAHATRNSVCVVANQTLVVGPGWTTMERENHFIV FT DLLGPTAGAGGDVRAIPTYGDGAGRIGTDAWVRSWRSSKFTAANLAKQARADGKMVVFR FT DSAPFINGWSAAISFLVGCVGFEPNALLANYSRSGGQHRQIIERYFKAAQFEPRKVVQG FT VFA" FT mat_peptide 13..1599 FT /product="putative protease cofactor" FT mat_peptide 1600..3378 FT /product="putative NTP-binding domain" FT mat_peptide 3379..3465 FT /product="putative Vpg" FT mat_peptide 3466..4188 FT /product="putative cystein protease" FT mat_peptide 4189..6351 FT /product="putative RNA-dependent RNA polymerase" FT polyA_site 7894 XX SQ Sequence 7905 BP; 1886 A; 1696 C; 1943 G; 2380 T; 0 other; tttgaaaaca aaatggttag gcccattgta ttctcgaacg gcgagtccgt tctcccaaaa 60 gccctcattt ctgaggccaa gatggttgca gccttcttga aatccaccag gaaccctgct 120 ggtttctggg ttacttttct cgctcagggt acctccctga ctccatccca agtggcactc 180 tgtgccatta acggcctcgt gagccgtcag actgtcgaga ttcattctca cggtccgtcg 240 gccgaggttt tctggtctgc tcttcaggcc agactccggt cctttcttag ggcccaccgc 300 cagagggtta ccagccttct ggctctgtgc tgcgaagcct atgaggctcg cgacctttgc 360 cgttaccagc ggcagagggc tgcttacctc gctcgaggtg cagcttgcag ggctaaggcc 420 ctgcgcaaaa aaaagaccgc tctccggaag gagagagcgg ctcagctggc tcagcgccag 480 ctggaaggcg aacgccgggc agctgcccgg cgggcaaggc tggcccgcaa gggtcagcag 540 gttttacgcc gcaggcttgc ggctctcttc tccccccctc ttccctttcc cacttctgag 600 tgggcttggg aacctcttcc ttcctccccc ctcccggctt tccgggattt ctttacctct 660 cctcttcttg aggttgaggc tccttggtcc cctcctatgg gacccgtggg ctttaataag 720 tccactcctc aggcgctata ttgcgccgtt cgtgctcgtt tgagcacttt ctctaaatcc 780 acggggtctc ttttccccat ggtttctttt gataggcttg tgccaggtca tttgatgatg 840 tttcaattga tgcatcgtct agtggctgcg tattccgcct gtcccgttct ctctctcatt 900 gaggacggtt taaattcttt gctgaatggc tgccattatc tccaagtttt taaagagatg 960 atgatatctg cttcccaagt tgtacataag ttaacgggaa atagccattc cgctatgaca 1020 gtgcaagctg gttttggtat ctcgaatttt tttagaggta ttggaacttc cctggccact 1080 ggtttcagtg atggtttgat cagcaaagcg attgatacta aagacgtaat tgtcgatggt 1140 attaattggg ttgctgataa aactgttggg gcctttgtca gagctctccg cgatcagttt 1200 tctgatacgg ttggaaagta tctgaacgta ttgtccgagt acaaagcaca aattgaaaat 1260 ttttgggctt gggcaatacg ctggtcacga aatcttatgg acaaggttga tgtgagtttg 1320 cgcgctctac agggttctgc tttttttgcg gctgcccttg ttattttagg aggtctcgta 1380 tttttagtcg agaatctcct acccactggt atgacaggac ttcctgtcgg cggtctctcc 1440 tccctttttg ttggaggggc tcttttattt tggtgtggga aggaattgtt ccaaagcgaa 1500 aagattatga acattcgctt ggccatcatt gcgatggctg agcggatgtt tgtgaagcct 1560 aagagcaaac cttctcctac tgggatgggt ctccaaggag gcctatctga tatttttggt 1620 gttcccctat cagttatgga atcaattggt tccggactgt gcgggagtgc cctttcatct 1680 atgacttacg ttggtaagtt tggacaggcc atggacaaca tccgcaaggg tgttatgtgc 1740 atgcgccaat tcttaggttg gatgttggaa caattagctg agctctatga caatgtgagt 1800 ggccgtaagg ttgctttctt tagagagcta gccacattag cgcaagttga tgtggaaaag 1860 tggatagttg atgtccagga gtttcttctt gtagctgaag ttgctcccga gggtgatagg 1920 gtcattttag ataccgtatt actcttgctc caaaaagggc agacgattca gcgtttgctc 1980 tgccaaacaa aacaagggac ttcttttaac tatggtcgtc ttgttgccac gctcgtcaag 2040 tctttggatg atgtatatac taaatattcc aaggctggac gtcgcgtgat gtataggttt 2100 gttcccttct gggcttattt ctttggcaag gcccggactg gcaagacaat ttttgccaac 2160 aattttaaaa ataccatggt ccaatatctt ggtactacga gcgaaaacat tttttacaaa 2220 aacgctcgtg atcaattctg gcctaagtat agacaacagg ccattgttat cgttgatgat 2280 ctgagttcag tggagaacct accgagctta gaatcagaat tcattcagct gatgagcacc 2340 atgccttatg gtctcaatat ggctgctgtt gatgagaagg gtagtgaatt taactcgaag 2400 atggtaatta ctacttcgaa taagtttgat gccccctccc atgctaaaat tcatgacctt 2460 gatgcttata ggcttcgccg tcatgcttgt gttgaggtgc gaagggttcc cgatgctatt 2520 tttgatgcta agaaccccta tctctcttct gaagcgcgtt ttgtgaacaa ttgtgatcaa 2580 gcgcccgaag gagaatggat ggctatggag caaatgcaag aagagcttat agcccgttac 2640 cagaaacacc atgaagctca ggctgatgag tacaattttt ggaagcggaa tgccagatca 2700 acccatgatg tctttgatat tctcgaagag aagatcaggg aagaaggttt ttggctttcc 2760 tctgccgaat tttgcatgcc tgataaagag gctcaaggta ttcgtgccac cgaccgtttt 2820 attggtatcg atggcaagat tatcaagtat gatcccctta attttgtcgg ggagtactat 2880 aaaggttcgc acttagccaa aagtgcacaa gatcttgaaa acatggcttt ggcccgctat 2940 cacgaatttg ctgatttgat ggcggcctgg tctgttaacg gtgtggttaa gcagttcatg 3000 gaacaactgc tcaccggccc tacgcatatt gattccatcg atttgcttgg gaaggaggca 3060 ttgccctctc accgtgaatt ttttgattct ttaacccttc caaaaagggc tgttttgaga 3120 ctcatccaga agaaagtgga tgctatcaaa gctggccctg ctttcgaatt tgttccagag 3180 aaagggttta ctctagctaa agttctaaag gaaggctatg agtatgtgta taataacggc 3240 ggtaaaatat ttttgatttt tgctgctgtt gtaattcttt ggtttttgtg tggaactgct 3300 atgcacctta ttcgccaaat tttttgtggc ggggttggtg caggttctgc tggagctatg 3360 gcgcgaatga gtgtacagtc tactattccg tcaggctctg atgtaaattc ttttgcttct 3420 cgcaatctta ggcgtgtata tagacccacg cgcctgggat tgcaatctgc tatgaaccct 3480 gtggaaactg tttcacaggc tgagcagttg atggcatgga ttgagactcc cgaagggaat 3540 ctgatttcat gttgtcgttt taagtcacgt gcacttgcct tgacttacca tcaggcccgg 3600 tcaattgcac ccgggtcgaa aattttcatt agttacatga cagctgctgg tacccccagt 3660 gttccaattg agcacatttg ggatccacag gaaacttccc aagttccaaa tcttaggagg 3720 tttaatgata cggaggtgtg tgtttacaca catccccagc tatcacccct tcctggcccc 3780 ctcgagtcta tgtttgtcga agacatgcaa gcgggggcca ccctctatca tgttgagggt 3840 cgcgtgatga agttagtaag ggattctcat gattatcttc ctactgactt tgttggcgcg 3900 ccagaagaga tagttcctca tgtgtggtcg ggtgttgtac acttgaacac gcatgctgtt 3960 actattgata attacacttg gggaggggac tacaaagtta atgttccccg ttccctagtt 4020 ggtacctatc ccaactctgt agaggattgc ggaggccttt tattctctaa aatccatgga 4080 tcctacaaag ttatagggat gcatgtcgct ggtgagcggt tagcagatgg ctcttattta 4140 tctgctgctg ctcttttccc gcgtccgagt ctttttatat cggcgcaatc tggtctacgc 4200 actttgcaaa ttgaagctgg caaggatacg cgtggtgtct ctaaggtggg tttcattaaa 4260 gccgaagaaa taccacgtgc tcctcgcaag tcttcatttg ttgaagtgga gcctgaattg 4320 aaggtcccag ttcccgctgg ggtgccttta aaacaaattg caattctttc tagctcagat 4380 gagcgcctaa aaggcactca atttgagggg tatgatccac ttagacaagc aactgtcaaa 4440 tgtgaggatc ctatgtttga cttaaagtcg gacgtactag aagaagtgtg ccgggatatt 4500 gaggaaacct ggtttgattg tgcaccctcg ctttcccttc tttccaatga agaaatggtc 4560 aatggtaacg atgaagagat ttttctcgat gcaatcgtcc agactacttc tgagggttat 4620 ccctatgttc tcgaaagagg accaggggag aaaggtaagg aaaggtatct tgaacaagat 4680 cctaaccttc cggaaggaaa attgagggtc cgtcctggga cctcagtaca cagggatctg 4740 ctagcccttg aaactagcat tcatactacc atccctatct tgattgggat ggaaatacca 4800 aaggatgaga gactcaaaga gtctaaaatc ctcactccgg caacgcgcac ttttacggtg 4860 ttgcctatgc cgtataattt acttctacgt aaattttttg gtagattcac agctttttta 4920 cagggcaacc gccataggtt gccttgtgcc gtaggtgtca atccctattc taatgagtgg 4980 acccgaattt ttgatggact tgctcaaatg tctcccaagg cattgaacgg ggattataag 5040 agttttgatg gtaaactcaa ctttcaaatg tacgatgcta tcgcccgcct tttagggcgc 5100 gtgcaccgtg atgagagtac ttcacaagcc agatataatc ttatcatggc tatgtatgct 5160 cggtattccc tttgtggaag ccaagtatat gaagtgaggg ctgggttgcc ttcaggttgt 5220 gctattactg taatcatgaa ctcgattttt aatgagatct tgattcggta cgcgtaccgt 5280 gtgtcggttg gacctatttt acgtaatagg ttcaaccatt ttgttaaatt agtggtttat 5340 ggtgatgata atctcattgc tgtggacccc caacttgcct ctggaacctt tgtgggttat 5400 gaaggaggga aaatggtagt caccgatatt tttgacggtg ctactattca aaaggtcctc 5460 cgagatgtaa atataaccat cacggatgga tctgacaaga gtgccaagga gtggcatttc 5520 aagcctttgg aatctctcga ttttttgaag aggggtttca agagaatggc tgatgggcgc 5580 gtgttggcgc ctttagattt aagcgcaatt ttttcttcgc tgcatgtagt tagacctgaa 5640 caaggttcca ctgctgcagc ggtcaatata aacgccagag ttgctctgag agaactttgg 5700 tggcatcagg acgagaccct ttttaatatg gtccgttctt tttttcagcg ccataacttc 5760 gtagatctgc ccaattggcg cgaatgtagg gattttcatc agtcccaata cactgaatgg 5820 catccattta aggaatataa attcctagag atgccactcc ctgaacaaga aaacagggag 5880 tttatgctag cccatgccac gcgcaatagt gtctgtgtcg tggcaaacca aacccttgtt 5940 gttggacctg gctggaccac aatggaaaga gaaaatcact tcattgtgga cttattaggt 6000 cccacagctg gagcgggtgg tgatgttcga gctattccca cttatgggga tggtgctgga 6060 cgcataggca ctgacgcttg ggttcgtagc tggcgaagca gcaaatttac tgctgccaat 6120 ctggctaaac aggcccgcgc agatgggaaa atggtagttt tcagagattc tgcacccttc 6180 attaatggtt ggagtgcagc tatttctttt ctcgtcggtt gcgttgggtt tgagcccaat 6240 gccctgctgg ctaattattc aaggtcagga gggcaacacc gccaaattat agagcggtat 6300 tttaaagctg cgcagtttga accacgtaaa gtggttcaag gtgtgtttgc ctagttggta 6360 tcttaaatac ccagtactcc tagctgtctc taggggcgtt tggttgccgt aagcaacctt 6420 caaaaggatg tcatcattta gcgttttacc gaaaggttaa agatgtgaat ggcagcgtaa 6480 cgcactgtca atcctccata atggttccac gagtcgacac gtggattttg agatagtggt 6540 aaaccactca ttcagagtaa cgcctgaatg tattagtgct gctgcatggt gttcaccgta 6600 aggtcggtac tcctgaaaag gaatcctgtt cgcttgcgtg gtcggtgaca ccttctgcag 6660 atttgcatta gtttgactcc tggaaagaca ggtgacgtgg agagcaaagc tctatccggt 6720 ctgccaggtg caagacctaa atccaatgca ccatccccaa ccacatgggt gaaatgtgga 6780 cggtggagtt gccggtccta gctcttaagt gcatgttctg aaaataacat gctcctttta 6840 tttgtttgag ggtttcaaac atcatatctt ttatgcttta ttttatttta ttgtgtagtc 6900 atacgcacac aggaattgat cccctgtgta gtacgcgaaa gtctcctcac tttgtagcac 6960 ctcttgcttg gtgtccacga gtgctctgct acgtgaagtt cttcatttag ctatatttat 7020 tctggaatta cggacgtagt ccccttcaga gctgatgtgt aggatgcccg gatagacttc 7080 aaacgaaggg ttccccgaaa tcggcccacg ttcctggcgg gaatagtgaa ggtcatctcc 7140 agatagacgt agtttaaaat tattttgaac ttaacgaaag acgaggcgag tagttagcgt 7200 tgtgtcaaac ctgagtggtt ttcagctcag gttagtctta ctttataggc tcagactagt 7260 cttagtcgaa actagtaaag ttgaaattag tgattaagtc caggaagttt gtagtaaagg 7320 cgataagtcc atcctacccc atatagaatg ggatgcgtgg ttatcaaatt tcacgaattc 7380 ttctgcttgg taatatcact agtggattct tgaaaagtta gacatgttga gtgggcgttc 7440 tcatttcaaa cgtcattaaa cggaatatca caattctggc gaccgtgtaa cggcaacagt 7500 gttaaggtga cactggtgga gtggctgcaa ccatttccat gcgaccggtc ttagtagtat 7560 taaggatgct acagccaagg gttccgtaag ttttagttaa cgaatatcta ctgccatccg 7620 taatagtgtg tggtggtcct caatcttact tggtatatga gccgggtgtg ctggtaacac 7680 atctgtgact ttgaatctca agcccaagaa ttttgggggt tatgtgggta gatagcgtta 7740 gcaagggggt tgtttagcaa tatttgttgc cccgatcagt tttcaaaatt tgcttattgt 7800 atgagtgtcg gactcaagca gtgtctaggt tttaaattgt ttagatttaa atgtttactt 7860 ttatagtttt ccttttacgt aatctttccg acgcaaaaaa aaaaa 7905 //