ID JF909198; SV 1; circular; genomic DNA; STD; VRL; 2800 BP. XX AC JF909198; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Mayotte:YT67B08:2009 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2800 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2800 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 85f4a64886cfd6439955347800616859. XX FH Key Location/Qualifiers FH FT source 1..2800 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Mayotte:YT67B08:2009" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.96 S 45.11 E" FT /collection_date="2009" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LZB5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LZB5" FT /protein_id="AEG90522.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCGCPHCPRHQKQNMGQQAHVS FT EAEAVQNVSKPRCP" FT gene 334..1068 FT /gene="AV1" FT CDS 334..1068 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LZB4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LZB4" FT /protein_id="AEG90521.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKLYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHIGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQNRPSMRI FT ILRMRCYCIWHVHMPQILCTRL" FT gene complement(1103..1507) FT /gene="AC3" FT CDS complement(1103..1507) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LZB8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LZB8" FT /protein_id="AEG90525.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDKRPGHMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VIRAVDHVLYAVLLNTLQVTEQHAIKFNLY" FT gene complement(1248..1655) FT /gene="AC2" FT CDS complement(1248..1655) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LZB7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LZB7" FT /protein_id="AEG90524.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKNRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEARAHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1564..2643) FT /gene="AC1" FT CDS complement(1564..2643) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LZB6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LZB6" FT /protein_id="AEG90523.1" FT /translation="MPRAGRFQINAKHYFITYPRCSLTKEEALSQLKALSYPTNIKFIR FT VCRELHLDGVPHLHVLIQFEGKFQCTNQRFFNLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFVTLHEPL FT FSSAHQSPTPHSEEQGPQT" FT gene complement(2253..2486) FT /gene="AC4" FT CDS complement(2253..2486) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LZB9" FT /protein_id="AEG90526.1" FT /translation="MGCLISMFSSNSKASSNVQTRDSSISFPHPDPHISIRTFRELNHR FT PMSKLTLKREGNFLTMAFSRSMPEVQGGRASI" XX SQ Sequence 2800 BP; 733 A; 559 C; 717 G; 791 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacga gatggccgcg cccgtgaaag 60 atagtggtcc ccacgcacgc gtttcggtcg accagtcata tttacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtagt gaagcgcgtc aacatgtggg 180 atccattgtt gaacgatttc ccagaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggagct gagtacatac 300 gggatctaat aggggtttta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgtggttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc cgaagctgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc gtatgaacag agggatgatg ttaagcacat tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagaca gaaggcctta tggtccgagc 780 ccgcaagatt ttggacaagt gttcaacatg tttgataatg aacctaccac tgcaactgtg 840 aagaatgatc tgagggaccg atatcaggtg ttacgtaaat tctatgcgac tgttgttggt 900 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagaa caggccaagt atgagaatca tactgagaat gcgttgttat 1020 tgtatatggc atgtacacat gcctcaaatc ctgtgtacgc gactttgaaa atacgcatct 1080 atttctatga tgcagtgaca aattaataaa ggttgaattt tattgcatgt tgctccgtaa 1140 cttggagtgt gtttagtaat acagcgtaca gaacatgatc aacagctcta attacagtgt 1200 taatggaaat aacgcctatc atatctaaat acttgagcac ttgatatcta aatactctta 1260 agaaaagacc agtctgaggc cgtaaggtcg tccagacctt gaagttgaga aaacacttgt 1320 gaatcgccaa tgccttccgg aggttgtggt tgaaacgtat ctggagtgtg atgatgtcgt 1380 ggttcatgtg ccctggcctc ttgtcgtggt tggtgatttc gaaatagagg ggatttgtta 1440 tttcccaggt aaaaacgcca ttctttgctt gaggcgcagt gatgagttcc cctgtgcgag 1500 aatccatggt tgatgcagtc gatatggaga tagaacgagc agccacattc gaggtctact 1560 cgtctacgtc tgagggccct gttcttcgct gtgcggtgtt ggactttgat gggcacttga 1620 gaacaatggc tcgtggaggg tgacgaaggt ggcattcttt aaagcccagg ctttaaggga 1680 ctgattcttc tcctcttcca gaaactcttt atatgatgat gttggtcctg gattgcagag 1740 gaagatagtg ggaatgccgc ctttaatttg aattggcttc ccgtactttg tattgctttg 1800 ccagtccctt tgggccccca tgaattcttt gaagtgcttt agataatgcg ggtctacgtc 1860 gtcaatgacg ttgtaccatg cgtcgtttga atataccttt ggagacagat ccaggtgtcc 1920 acatagataa ttatggggtc ccagtgaacg agcccacatg gtttttccgg ttcggctatc 1980 accttcgaga acaatactga tcggtctcca cggccgcgca gcgggactgc atatattttc 2040 ggatacccat acctctatgt cttcggggac gtgtgtgaat gatgatgata agaacggact 2100 aacgtaagtt tgtggcggag cctggaagat tctatccgcg ttagcagata tgttatggaa 2160 ctgtaaaaaa aaggacttgg gatctttttc tttaataatt tgaagagctt ctgatttaga 2220 agaagcattc aacgcgtctg catatacctg agctaaatgc tggccctccc cccttgcact 2280 tctggcatcg acctggaaaa tgccatcgtc aagaaattcc cctccctttt caatgtaagc 2340 tttgacatcg gacgatgatt tagctccctg aatgttcgga tggaaatgtg tggatctgga 2400 tggggaaatg agattgaaga atctctggtt tgtacattgg aacttgcctt cgaattggat 2460 gagaacatgg agatgaggca ccccatccag atgtagttct ctgcaaaccc taatgaattt 2520 gatattcgtc gggtaagaaa gggcttttaa ttgggaaagg gcctcttcct tggttaatga 2580 gcatcgggga taggtgatga aataatgttt ggcatttatt tgaaaacgac cggctcttgg 2640 catatttgct gtcgtttggg atcggtggac actcaaaact ccaggggaat ggtggaacgg 2700 tggacaattt atatgatgtc ccccaatggc atatgtgtaa ataggtcaac ctccattcaa 2760 attttgaatt gcgaatattg gcggccatcc gattaatatt 2800 //