ID JF909090; SV 1; circular; genomic DNA; STD; VRL; 2802 BP. XX AC JF909090; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Grande-Comore:GC12B61:2008 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2802 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2802 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; d5418938c719851e4af4de614d1fb415. XX FH Key Location/Qualifiers FH FT source 1..2802 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Grande-Comore:GC12B61:2008" FT /mol_type="genomic DNA" FT /country="Comoros:Grande-Comore" FT /lat_lon="11.5 S 43.45 E" FT /collection_date="2008" FT /db_xref="taxon:1229189" FT gene 175..531 FT /gene="AV2" FT CDS 175..531 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LXG7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LXG7" FT /protein_id="AEG89874.1" FT /translation="MWDPLLNDFPETVHGFRAMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCS" FT gene 335..1108 FT /gene="AV1" FT CDS 335..1108 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LXG6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LXG6" FT /protein_id="AEG89873.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRAVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1105..1509) FT /gene="AC3" FT CDS complement(1105..1509) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LXH0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LXH0" FT /protein_id="AEG89877.1" FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFEITNHDKRPGHMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLKVFRYQVLKYLDMIGVISINT FT LLQAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1250..1657) FT /gene="AC2" FT CDS complement(1250..1657) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LXC1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LXC1" FT /protein_id="AEG89876.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQAARAHEPRHHHTPDTVQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1566..2645) FT /gene="AC1" FT CDS complement(1566..2645) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LXG8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LXG8" FT /protein_id="AEG89875.1" FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTIIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTSRSTPFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2255..2488) FT /gene="AC4" FT CDS complement(2255..2488) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LXH1" FT /protein_id="AEG89878.1" FT /translation="MGCLISMFSSSSKGSSNVPTQDSLISFPHPDPHLSIRTFRELNHR FT PMSKLILKREGNFLTMEFSRSMPEVQGGRASI" XX SQ Sequence 2802 BP; 737 A; 558 C; 709 G; 798 T; 0 other; accggatggc cgcgcccgaa aaaagcaggt ggaccccaca agatggccgc gttcgttaaa 60 gaaagtggtc cccgcgcact tgtgttggtc gtccagtcat attcacgcgt gaaagtctag 120 atatgtgttg tatgtcttta tagacttcgt cgcgaagtag tggagcgcgt caacatgtgg 180 gatccattgt tgaacgattt tcccgaaacc gttcacggtt ttcgtgctat gcttgcagtt 240 aaatacctgt tacatctgga acaggaatac gatcgcggta ctgtcggggc ggagtatata 300 cgtgatttaa taggggttct acggtgtaag agttatgtcg aagcgaccag gagatataat 360 aatctcaaca cccgtatcca aggtgcggag gaggctgaac ttcgacagcc catacacgaa 420 ccgtgctgtt gcccccactg tccgcgtcac cagaagcaaa atatgggcca acaggcccat 480 gtatcggaag cccaagatgt acagaatgta tcgaagccca gatgttccta agggctgtga 540 aggcccatgt aaggttcagt cctatgaaca gagggatgat gtgaagcaca ctggtatggt 600 ccgatgtgtc agtgatgtta cgcgtggatc aggcattacc catagagtcg ggaagaggtt 660 ttgtgtgaag tccatatata tattgggcaa gatttggatg gatgagaata tcaagaagca 720 aaatcatacg aaccatgtta tgttcttcct tgttcgagat agaaggccgt atggtcagag 780 tcctcaagat tttggacaag tgttcaacat gtttgataat gaacctacta cggcaactgt 840 gaagaatgat cttagggacc gatatcaggt gttacgtaaa ttctatacga ctgttgttgg 900 tggaccctct gggatgaagg aacaagctct ggttaagagg ttttttagga tcaataatca 960 tgtagtgtat aatcatcagg aacaggccaa gtatgagaat catactgaga atgcgttgtt 1020 attgtatatg gcatgtacac atgcctcgaa tcctgtgtac gctacgctga aaatacgcat 1080 ctatttctat gatgcagtga caaattaata aaggttgaat tttattgcat gttgctccgt 1140 aacttggagc gtgtttagta atacatcgta cagaacatga tcaacagcct gaagtagagt 1200 gttaatggaa ataacgccta tcatatctaa atacttgagc acttgatatc taaatacttt 1260 taagaaacga ccagtctgag gccgtaaggt cgtccagacc ttgaagttga gaaaacactt 1320 gtgaatcccc aatgccttcc ggaggttgtg gttgaaccgt atctggagtg tgatgatgtc 1380 gtggttcatg tgccctggcc gcttgtcgtg gttggtgatt tcgaaataga ggggatttgt 1440 tatttcccag gtaaaaacgc cattcgttgc ttgaggcgca gtgatgagtt cccctgtgcg 1500 agaatccatg attgatgcag tcgatatgga gatagaacga gcagccgcat tcgaggtcta 1560 cccgcctacg tctgacggcc ctggtcttcg ctgtgcggtg ttggactttg atgggcacta 1620 gagaacaatg gctcgtggag ggtgatgaag gtggcattct ttaaagccca ggctttaagg 1680 gactggttct tttcctcttc cagaaactct ttatatgatg atgttggtcc aggattgcag 1740 aggaagatag tgggaatgcc gcctttaatt tgaattggct tcccgtactt tgtattgctt 1800 tgccagtctc tttgggcccc catgaattct ttgaaatgct ttagatagtg cgggtctacg 1860 tcgtcaatga cgttgtacca tgcgtcgttt gaatatacct ttggagacag atccaagtgt 1920 ccacatagat aattatgggg tcccagtgaa cgagcccaca tggttttccc tgttcggcta 1980 tcaccctcga gaacaatact gatcggtctc catggccgcg cagcgggact gcatatattt 2040 tccgataccc atacttctat gtcttcgggg acttgtgtaa atgatgatga taagaacgga 2100 ctaacataag tttggggcgg agcctggaag attctatccg cgttagcaga tatgttatgg 2160 aactgtaaaa aaaaggactt tggatctttt tctttaataa tctgaagagc ttctgtttta 2220 gaagaagcat tcaacgcgtc ggcatatacc tgagctaaat gctggccctc cccccttgca 2280 cttctggcat cgacctggaa aattccatcg tcaagaaatt cccctccctt ttcaatataa 2340 gctttgacat cggacgatga tttagctccc tgaatgttcg gatggaaagg tgtggatctg 2400 gatgtggaaa tgagatcaaa gaatcttggg ttggtacatt ggaacttccc ttcgaactgg 2460 atgagaacat ggagatgagg caccccatcc tgatgtagtt ctcggcaaac cctaatgaat 2520 ttgataatcg tcgggtaaga aagtgctttt aattgggaaa gtgcctcttc ctttgttaat 2580 gagcatcggg gataggtaat gaaataattt ctggcattta tttgaaaacg accggctctc 2640 ggcatatttg ctgtcgtttt gtatcggtgg acactcaaac tctctggcaa tcggtggaat 2700 ggtggacatt atataggatg tcccccaatg gcattcgtgt aaataggtag acttccattt 2760 caaatttgaa tgtcgaatat tggcggccat ccgattaata tt 2802 //