ID JF509748; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC JF509748; XX DT 05-MAR-2012 (Rel. 112, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus-[In:SriGanganagar:2005], complete DE sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus-[In:SriGanganagar:2005] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2753 RX PUBMED; 22307170. RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S., RA Anandalakshmi R.; RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV) RT in northwestern India"; RL Arch. Virol. 157(5):855-868(2012). XX RN [2] RP 1-2753 RA Kurulekar M., Kankanallu R.S.; RT ; RL Submitted (09-MAR-2011) to the INSDC. RL Plant-Virus Interactions Lab, Mahyco Research Center, Dawalwadi at RL Jalna-Aurangabad Road, Jalna, Maharashtra 431 203, India XX DR MD5; 83135902a86eb4a9501d85f921d4abcb. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Cotton leaf curl Rajasthan FT virus-[In:SriGanganagar:2005]" FT /segment="DNA A" FT /host="cotton" FT /isolate="In:SriGanganagar:2005" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="Oct-2005" FT /db_xref="taxon:1151042" FT gene 131..487 FT /gene="V2" FT CDS 131..487 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:H8YHQ9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H8YHQ9" FT /protein_id="AFC41155.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQDVQDVQKSRCS" FT gene 291..1061 FT /gene="V1" FT CDS 291..1061 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H8YHR0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H8YHR0" FT /protein_id="AFC41156.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLEIRIYFYDSVTN" FT gene complement(1064..1468) FT /gene="C3" FT CDS complement(1064..1468) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:H8YHR1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8YHR1" FT /protein_id="AFC41159.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1161..1613) FT /gene="C2" FT CDS complement(1161..1613) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:H8YHR2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H8YHR2" FT /protein_id="AFC41158.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1510..2598) FT /gene="C1" FT CDS complement(1510..2598) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:H8YHR3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H8YHR3" FT /protein_id="AFC41157.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFNQVPEELEVWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTTQGSEEAQQEEESRS" FT gene complement(2142..2444) FT /gene="C4" FT CDS complement(2142..2444) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H8YHR4" FT /protein_id="AFC41160.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2753 BP; 734 A; 555 C; 627 G; 837 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaac atgtgggatc cactattaaa cgaattccct gatacggttc acgggtttcg 180 gtgtatgctt tctgtgaaat atttgcaact tttgtcgcag gattattcac cggatacgct 240 tgggtacgag ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc 300 gagctgccga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg 360 gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat 420 ggacaaacag gcctatgaac aggaagccca ggatgtacag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtattagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac tggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgtca 900 gagtcaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 960 aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt 1020 tggagattag gatatatttt tatgactctg taacgaattg atattaatga agtttgaatt 1080 ttatttctga atattgatct acatacatag tttgttggat tacattgtac aatacatgtt 1140 ctacagcttt aataactaaa ttaattgaaa ttacaccgag attgttcaga tatttgagga 1200 cttgggtttt gaataccctt aagaaaagac cagtctgagg ctgtaaggtc gtccagattc 1260 ggaatgttag aaaacacttg tgcagtccca gagctttccg agtgttgtag ttgaactgga 1320 tcctgatcgt gagtatgtcc atattcgtcg tgaatggacg gttgacgtgg ctgatgatct 1380 tgaaataaag gggatttgga acctcccaga tatatgcgcc attccctgct tgagctgcag 1440 tgatgggttc ccctgtgcgt gaatccatgg ttgtggcagt tgattgacag ataataagaa 1500 cacccgcatt caagatctac tctcctcctc ctgttgcgcc tcttcgcttc cctgtgttgt 1560 actttgattg gtacctgagt acatgggtct atcaagtgtg atgaagatcg cattctttaa 1620 agcccaattt tttagtgcag aattcttctc ttcatccaaa aactctttat agcttgaatt 1680 gggtcctgga ttgcagagga agatagtggg aattccgcct ttaatttgaa ctggcttccc 1740 gtattttgta tttgattgcc agtccttttg ggcccccatg aactccttaa agtgctttag 1800 gtaatgcggg tcgacgtcat caatgacgtt aaaccaggcg tcattactgt atacccttgg 1860 gctcagatct aaatgtccac acagataatt atgtggacct aatgatctgg cccacatcgt 1920 cttccccgtc ctactgtcac cctcaatcac tacacttatt ggtctattgg cccgcgcagc 1980 ggcactgacg acgttctcgg cagcccacac ttcaagttct tctggaactt gattgaaaga 2040 agaagaggaa aaaggagaaa cataaggagc tggtggctcc tgaaagattc tgtctagatt 2100 tgcatttaaa ttatgaaatt gcagtacaaa atccttagga gctagttcct taatgactct 2160 aagagcctcc gacttacttc ccgcgttaag tgctgcggcg taagcgtcat tggctgtctg 2220 ttgccctcct cttgctgacc ttccgtcgat ctgaaattgc ccccagtcga gaatgtcccc 2280 gtccttctcg atgtaggatt tgacgtcgga gctggattta gctccctgta tgttcggatg 2340 gaaatgtgct gacctgcttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa 2400 tttcccttcg aactggatga gaacatgcaa gtgaggagtc ccatcttcgt gaagctctct 2460 gcagattcta atatattttt ttgaagttgg ggtttgtata tttaataatt gggaaagtgc 2520 ttcctctttg gtgagagaac atttgggata agtgatgaaa tagtttttgg aataaatacc 2580 gttccgcttt ggaggcatgt tgactaaaat tgatcaccga ttgaccgctc ttgcaactct 2640 ccccggtata tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaaa 2700 actttaattt gaatttcaaa ccaaaaggct aaagcggcca tccgtttaat att 2753 //