ID JF301669; SV 2; circular; genomic DNA; STD; VRL; 7753 BP. XX AC JF301669; XX DT 03-JUL-2011 (Rel. 109, Created) DT 30-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Grapevine vein-clearing virus isolate LBC0903, complete genome. XX KW . XX OS Grapevine vein clearing virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7753 RX DOI; 10.1094/PHYTO-02-11-0034. RX PUBMED; 21554183. RA Zhang Y., Singh K., Kaur R., Qiu W.; RT "Association of a novel DNA virus with the grapevine vein-clearing and vine RT decline syndrome"; RL Phytopathology 101(9):1081-1090(2011). XX RN [2] RP 1-7753 RA Zhang Y., Singh K., Kaur R., Qiu W.; RT ; RL Submitted (04-FEB-2011) to the INSDC. RL William H. Darr School of Agriculture, Missouri State University, 9740 Red RL Spring Road, Mountain Grove, MO 65711, USA XX RN [3] RC Sequence update by submitter RP 1-7753 RA Zhang Y., Singh K., Kaur R., Qiu W.; RT ; RL Submitted (26-AUG-2011) to the INSDC. RL William H. Darr School of Agriculture, Missouri State University, 9740 Red RL Spring Road, Mountain Grove, MO 65711, USA XX DR MD5; e73af979db1a6e51f226c53c8b417011. XX CC On Aug 26, 2011 this sequence version replaced gi:338777450. XX FH Key Location/Qualifiers FH FT source 1..7753 FT /organism="Grapevine vein clearing virus" FT /host="grapevine (Chardonel)" FT /isolate="LBC0903" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="Jun-2010" FT /db_xref="taxon:1050407" FT CDS 485..1111 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF I" FT /db_xref="UniProtKB/TrEMBL:F8TPA7" FT /protein_id="AEI98821.1" FT /translation="MQSIEQQQFEAEIESWERSERTPLHGYRDLVEYPRYERNQHFPSA FT KFPCYHFVAEKDNVHATYTKGDRIPQLLNTLYDLQVNQCHNQAVIYDRIQLLSRYTVRK FT GKPLPAIPEESVLKEPEESSTELKHQIELLRADLREIKANQSSLRLAISEIRESITDLT FT ARESAPKPIEAETAYLTAQLKVQVQEIKTALTEIKTFARTLVPER" FT CDS 1112..1495 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF II" FT /db_xref="UniProtKB/TrEMBL:F8TPA8" FT /protein_id="AEI98822.1" FT /translation="MSTWQIAAAAEEYKNAIKATATLTKDERAVGFVKPHEFEPNFSDT FT NIQRQNNTLIHLLIQSLEEIKELRAQVQTLNDRIITLEKGKAPVTLPDNVVEQISTQLK FT EAKFGQPKEGLVKGTKGTFRVWK" FT CDS 1495..7320 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF III" FT /db_xref="GOA:F8TPA9" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F8TPA9" FT /protein_id="AEI98823.2" FT /translation="MSRSRTQTTELPRATRRSTSPVERLDDQIRGYRRMARARYLAEQR FT IRRSFSRNYRETLERRLDPEAELQLSRRRRANLVPAEVLYSLNYNEPQNRVYQHYEEVR FT SHVIDRQQDFRFIEEQSYRTLVQEGMQHIHPGMLMVRIQVLHRVDAGISAMIVFRDTRW FT NDERQIISAMTVDMARGAQLVYAIPDLMMSIHDFYHHLQVSITTRGYGTGWVGGESNLI FT VTRSLTGRITNTSQANFNYQIEGVADYLASHGVQSIPGQPWRDINQEGSWNLRPSSIQA FT PTQVPTGLVSRQSATGNISLRFTGFQDQVQTVETEEESGMTDTGERVTHYALVGTFEWL FT EECPSYQQRRNQETEENGWVKHVEGDKGFNFKVRMTPPAWSHDPQPIIATGWGDDFNNP FT PPPPPPKTEEEEILELYPVRRRPDPVQIARKEKAAVFSQAVNTIFEHEGKDVSRMKPSG FT EAPDSDPDSPVWKVKKSPYPHKPMKLKDEKGKSPFEDLELKQDLVQSWIAQLGSGSGSR FT TEKPIFDTTSSDSDSDLSDVSSKVLAYAGVEEAVMEYPRRVKTATAKLADMEKAFAGET FT TAAVGGDSEMTTGQSSRSTLIPPNEGGGPIRYPPAERPSTSASTYNTTAPPLFEGTVRP FT GRYGRPLAPWSLPSAQHSQGALLILPPEVASHADAITTWETITLNHLMNISFDSLQDRV FT DYIENLLGPREREAWVTWRMAYDTEYRQLVELSGEPRNVTSTIKRVLGINDPYTGTTHI FT QNQAYADLERLQCKNLESVMPFLNSYFQLAAKSGKMWSSPELSEKLFRKLPPEIGPTIA FT KEYAERYPGMLIGVNARIQFVSEYLQDLCKQADLQRKLKNLNFCKAIPIPGYYDQGVKK FT KYGLRKSKTYKGKPHDSHVKVIKNKYKGAQGRKCKCYLCGIEGHYARECPKKHVRPERA FT AYFEGMGLDVNWDVISVDPGDQDGSDICSISEGEAQHGMEDLAAFKAQLPYPVEAQYEQ FT HQALVVIQTTFKKEDKPQGSWRMSKPIPETQQQCQHTWDDMYALAEGQQACSTCQTITV FT LGRRATCTLCLLNLCSLCAGLDFGLKIVPKTATRADWKFQDRDSLIASLYEHNAFLLRQ FT VEGLKQELQAAKEQLQLLHSVDMINLSDDGLENFSLEEKSFLRGGGGTSSSSIKISSTT FT TPPGFPTTPNRFQPLAQEKLKGIQEDLSLAVQFDDVRQQEQAYTEMPRGAHNKLYHVVV FT TFRIPDAKGQLLEFDINAIIDTGCTCCCINLTKVPDGAIENASIIQEVSGINSKTVVTK FT KLRQGKMILAGNDFYIPYVSAFEMNMPGIDMLIGCNFIRAMKGGIRLEGTEVTFYKTIT FT RIQTTLEPQKIAYLEELVEAEDLHYELAAASMPEPTAEGLRNTKLLAELKDQGYIGEEP FT LKHWSKNRVRCKLDIINPDITIEAKPPGHLTLEDKVKYQKHIDALLDLGVIRPSKSRHR FT SAAFIVASGTSVDPKTGKETRGKERMVIDYRMLNDNCHKDQYSLPGITSIIKSLGQAKI FT FSKFDLKSGFHQVMMEEESIPWTAFISPAGLYEWLVMPFGIQNAPAIFQRKMDECFKGT FT EDFIAVYIDDILVFSNSIREHEKHLQRMLSICKEHGLVLSPTKMKIAVPGIDFLGAHIR FT NSRVSLQPHIIKKIADKKDDELMTLKGLRSWLGVINYVRQYIPKCGTLLGPLYAKTSEH FT GDRRWHPKDWEIVRQIKKMVQSLPDLELPPPHAVIIIESDGCMEGWGGICKWKNSKGES FT KGKERICAYASGKFPTVKSTIDAEIYAVMASLENFKIYYLDKREITIRTDCQAIISFYD FT KTAIKKPSRVRWINFCDYITNTGIKVQFEHIKGQDNQLADQLSRLAQNVCAIQVIPESA FT HEALSIILEQDCTAQELMAQFNSMLQANLRLNHGRPNTTWYSRTKPKKSKARKQAQVQL FT RFDVSNDD" XX SQ Sequence 7753 BP; 2388 A; 1881 C; 1734 G; 1750 T; 0 other; tggtatcaga gctccagttt caaatctggg aaatctctac aattattcct tcaagattat 60 gatgaggaac taactctcat aatcgtgtag ggaatcgtta gtaggatctc agaacaaggt 120 tcttatcccc tcatactact gattctggta tataggctgg aaacacgaca ctgttacgat 180 cccacttctg ttggagtggt agtagcccgt tgtgagacaa cgccacgtac cattttcagt 240 tttcctagcc caaatcccca tgaacagaac tcccacggtc aataagtttc aacaggatcc 300 ctagcccaac aatactgaaa gtcctaggac aggctgcgac gcgaagtacc accagttcag 360 gcgatgctgt tccgccgatt gtttgtggga aaactgcagt aggagaggac ggacaactat 420 tcaagggaac ggaacctgga gacaccggcc gagttcttag taagcggttc aaggaaggag 480 actgatgcaa agtatagaac aacaacagtt tgaggcggag atagaatctt gggagagatc 540 tgaacgcaca cccctacacg gttaccgtga tcttgtggaa tatccccgtt acgaaagaaa 600 tcagcatttc ccatctgcaa agttcccctg ctaccacttt gttgctgaga aagacaacgt 660 tcacgccact tacaccaagg gagatagaat ccctcagctg ctgaatacac tgtacgacct 720 acaagtcaac cagtgtcata accaggcagt gatctacgat cggatccaac tcctttcgag 780 gtatacggtc cgaaagggta agcctttacc ggctatccct gaggaatctg tcctcaagga 840 accagaagaa agctcaactg agcttaagca ccagatcgag ctccttcgag cagatctaag 900 ggagatcaag gctaatcagt caagcctccg acttgccatc tctgaaatcc gtgaatccat 960 cacagatcta acggcaagag aatcggcacc taagccgatt gaagcagaga cagcctacct 1020 gaccgcccag ctaaaggttc aggttcaaga gatcaaaaca gctttaacag agatcaaaac 1080 ctttgccagg actttggttc ctgaaaggta gatgtccacg tggcaaattg ctgctgccgc 1140 agaggaatac aaaaacgcca taaaggcaac tgcaaccctc accaaggacg aaagagctgt 1200 tggctttgtt aagccccacg agttcgagcc aaatttcagt gacaccaaca ttcaaaggca 1260 aaacaatact ttgatccact tgctaattca aagccttgaa gaaatcaaag agctccgcgc 1320 tcaggttcag accctcaacg atcgtattat aactttggaa aagggaaagg ctccagtcac 1380 tcttcctgat aacgtggtag aacaaatatc cactcaactc aaggaagcca agtttggaca 1440 accaaaagaa ggtttggtca aagggacaaa aggcaccttc cgggtctgga agtgatgtct 1500 aggtccagga ctcagaccac tgagttgcct cgtgcaacca gaagatccac tagcccagta 1560 gaaaggctag acgaccagat ccgcggctac cgacggatgg cccgtgcccg ctaccttgcg 1620 gagcaacgaa tacgtaggtc cttttcaagg aactacaggg aaactctgga aagacgccta 1680 gatccagagg ctgaactaca gctcagtcga agacgaagag ctaacttagt accagcagaa 1740 gtactatact ccctcaacta caatgaaccc cagaataggg tttatcaaca ctatgaagag 1800 gtgagatccc atgtcataga ccggcagcaa gatttccggt ttattgaaga acagtcctac 1860 cgcacccttg tgcaagaagg catgcagcat atccaccctg gaatgctgat ggtgagaata 1920 caagtgctac accgagtaga cgcaggaatt agcgccatga tcgtgttccg agacacgagg 1980 tggaatgatg aaagacaaat tatcagtgct atgactgttg atatggccag aggggcacaa 2040 ctagtctacg ccatcccaga tctcatgatg tcaatccatg atttctacca ccacctgcaa 2100 gtcagcatta ccaccagagg atacggtacc ggttgggtag gaggtgaaag caacctcata 2160 gtgactaggt cactcaccgg aaggatcaca aataccagtc aggccaactt caattatcaa 2220 attgaaggag tagctgacta cctggcaagc catggcgtgc agagtatacc aggacagcca 2280 tggagggaca taaaccagga aggatcctgg aacctaaggc cttcatcaat acaggcccct 2340 actcaggtcc ccacaggcct tgtctcaaga caatctgcca ccggcaatat cagcctaagg 2400 ttcactggtt ttcaggacca ggtccagacg gttgaaactg aggaagagtc tggtatgaca 2460 gacacaggag aaagggtaac tcattatgcc cttgttggaa ccttcgaatg gttggaggaa 2520 tgtccttcat atcaacaaag aaggaatcaa gaaacagagg aaaatggctg ggtgaaacat 2580 gtggaaggag ataaggggtt caacttcaaa gtccgtatga cccctccagc atggagccat 2640 gacccgcagc ccatcatagc tacgggatgg ggagatgatt ttaataatcc tccgccacct 2700 ccacctccta aaactgaaga ggaggaaata ttggagttat acccagtaag aagaagaccc 2760 gaccctgtgc agatagccag gaaagaaaag gcggcagttt tctctcaagc tgtcaacact 2820 atcttcgagc acgaagggaa ggatgtctca aggatgaaac catcagggga agcccctgac 2880 tcggatccag acagcccagt ctggaaggta aagaaaagcc cttatcctca taagccaatg 2940 aagctgaagg atgagaaggg taaaagtcct tttgaggact tggaactaaa acaagaccta 3000 gttcaaagct ggatagctca actaggaagt ggctcaggaa gcagaacgga gaaacctatc 3060 ttcgacacta ccagcagtga ctcagactct gatctgtctg atgttagctc gaaagtttta 3120 gcctatgctg gagttgaaga agcggtaatg gaatacccac ggagggtaaa aactgcgacg 3180 gctaagctag cagacatgga aaaggctttt gccggagaaa caaccgcagc agtaggagga 3240 gattcggaga tgacaactgg tcagtcttct agatctactc tcataccacc aaatgaagga 3300 ggaggaccta tacggtatcc accagcagaa agaccgtcca catcggcctc tacatacaac 3360 actacagccc cacctctttt tgaagggact gttaggcccg gaaggtatgg tcgccccttg 3420 gcaccatggt ctctaccatc agcacagcac tctcaaggag ctttgctgat cctccctcct 3480 gaagtagcaa gtcacgctga cgccatcact acatgggaaa caatcaccct aaatcatttg 3540 atgaatatat catttgattc cctccaagac agggttgatt acattgaaaa tctccttgga 3600 ccaagggaaa gagaagcttg ggtcacttgg agaatggcgt acgatacgga atacagacag 3660 ctggttgagc tctctggaga gccaagaaat gttaccagca ccatcaaaag agttctgggt 3720 atcaatgacc cttatacagg aactactcac atccagaatc aagcctatgc ggatcttgag 3780 cgcctgcagt gcaaaaatct ggaatcagta atgccattcc tgaactctta tttccaactc 3840 gcagctaaga gtgggaaaat gtggagtagc cctgaactct cagaaaagct tttcagaaag 3900 cttcccccag aaatcggtcc tactatagca aaggagtatg ctgagcgata ccctggcatg 3960 ttaatcggag ttaatgccag aatacagttc gtctctgagt atctccagga cctgtgtaag 4020 caagcagatc ttcaaagaaa attgaagaat ttgaatttct gcaaggcaat tcctattcct 4080 ggttactatg accaaggagt aaagaagaaa tacggcctac gcaaatccaa aacttataag 4140 ggtaaacctc atgactctca tgtcaaggtt atcaaaaata agtacaaagg ggcccaaggt 4200 cgtaaatgca aatgctacct ctgtggtatt gaaggccact atgctcgaga atgcccaaag 4260 aagcatgtca gaccagaacg tgcagcctac tttgaaggca tgggcttgga tgtcaactgg 4320 gatgtaataa gtgttgaccc aggagatcaa gatggatcag acatctgctc aatttctgaa 4380 ggagaagccc aacatggaat ggaggaccta gccgcgttca aagcccaact tccatatcca 4440 gtggaagccc aatatgagca gcaccaggcc cttgtggtta tccaaacaac ctttaaaaag 4500 gaagataagc cccaaggctc ttggcgcatg tcaaagccca ttcccgaaac ccaacagcaa 4560 tgccagcaca catgggatga catgtatgcc ctagcagaag gacaacaagc gtgcagcact 4620 tgccagacca tcactgtact tggtcgacgt gctacttgca ccctttgcct actcaacctc 4680 tgctcactat gcgctggctt agacttcggt ctcaaaatag ttcctaagac tgccacacgt 4740 gctgactgga aattccaaga tcgcgattct cttatcgctt ccctctacga gcacaatgca 4800 ttccttctac gtcaagttga aggattaaaa caggaactcc aagctgctaa agaacagctt 4860 caactgctac actcggttga catgatcaac ctctctgatg atggattaga gaatttttcc 4920 cttgaggaaa aatccttttt aagaggggga gggggtacca gtagcagttc aatcaaaatc 4980 tcatcaacaa ccacaccccc tggttttcct acaacaccca acagattcca gcctcttgcg 5040 caggaaaaac ttaaaggaat acaggaagac ctatctctgg cagtacagtt tgatgatgtc 5100 agacaacaag aacaggcgta tactgaaatg cctcgaggag ctcacaacaa gctataccac 5160 gtggtggtaa ccttcagaat ccctgatgct aagggacagc tccttgaatt tgatatcaac 5220 gccatcatag acactggctg cacctgttgc tgcatcaacc tcacaaaggt acccgatgga 5280 gcaattgaga acgcctccat aatccaagaa gtctctggga ttaacagcaa aacagtagtc 5340 accaagaaac tcaggcaagg caagatgatc ctcgcaggga atgatttcta cattccttat 5400 gtctcagcct ttgagatgaa catgcctgga attgacatgc tgataggctg caacttcatc 5460 agagcaatga agggaggaat acggttggaa ggaactgagg tcaccttcta caaaaccatc 5520 accaggattc aaactaccct ggaacctcaa aagatagcat acttggaaga gctagtagaa 5580 gcagaagacc tacactatga gctcgcagct gcaagtatgc ctgagcctac tgctgaagga 5640 ctcagaaaca ccaaactcct agccgaactg aaagatcaag gctacatagg agaagagcct 5700 ctcaaacact ggtcaaagaa tagggtacga tgcaagcttg acatcattaa ccctgatatc 5760 accattgagg caaagccacc tggacaccta actctggagg ataaggtcaa atatcagaag 5820 cacattgacg ccctcctaga ccttggagtc atcagaccta gcaagagcag acataggtcc 5880 gcagctttta tagttgcctc tgggacctct gtagatccca aaactggcaa agaaacccgc 5940 ggtaaggaaa gaatggtgat tgactaccgc atgctaaacg acaactgcca taaggatcaa 6000 tacagtctgc ctggaatcac ctccatcatc aaatctcttg ggcaagctaa aatcttcagt 6060 aaatttgacc tgaagtctgg cttccaccaa gttatgatgg aagaagaaag catcccctgg 6120 actgctttta tcagccccgc aggtctatac gaatggctag tcatgccatt tggaatccaa 6180 aatgcacctg ccatatttca aagaaagatg gatgaatgct tcaaaggaac cgaggatttc 6240 atcgccgtct atattgatga tattctggta ttctcaaact ccatcagaga gcatgaaaag 6300 cacctgcaga gaatgctgag tatctgcaag gaacatgggc tcgtccttag cccaacaaaa 6360 atgaagattg ctgtcccagg aattgatttc cttggtgccc acatcagaaa tagcagagtg 6420 agtctgcaac cgcacatcat caagaagatt gctgacaaga aagatgatga gctgatgacc 6480 ctcaaaggcc tcagaagctg gttaggggta atcaactatg tcagacaata catccctaag 6540 tgcggaacac ttctcggtcc tctctatgct aaaacctctg agcatggtga tcgaagatgg 6600 caccccaaag actgggaaat tgtaagacag atcaagaaga tggtccaatc ccttcctgat 6660 ctagaacttc ctccacccca cgcagttatc atcattgaat ctgacggttg catggaagga 6720 tggggaggaa tctgcaaatg gaagaactca aagggggagt ccaaaggcaa ggagcgaatc 6780 tgtgcttacg ccagcggaaa attcccaaca gtcaaatcca ccatagatgc tgaaatttat 6840 gcagtcatgg catccctgga gaattttaag atttactatc ttgataagcg ggaaatcacc 6900 attagaactg actgccaggc cataatcagc ttctatgata agacggctat caagaaaccc 6960 agcagagttc gctggattaa tttttgtgat tacatcacta acacagggat taaagtccag 7020 tttgaacata taaaaggcca agataatcag cttgcagacc agctctcaag gcttgcccag 7080 aatgtctgcg caatccaggt catccctgaa tcagcccatg aagccctcag tataattcta 7140 gaacaagact gcacggccca agaattaatg gcccagttca actctatgct tcaggcaaac 7200 ctcaggctca accatggaag gcccaacact acttggtact caaggaccaa gcccaagaaa 7260 tccaaagccc gtaagcaagc ccaagtccag ctacgctttg acgtaagcaa tgacgactag 7320 ggataataat ggaggaatct tgtaaggaca gcacatggtc cttctttcct cttttctttt 7380 gtaatttttg tcttcttgtg tcggcaaccg ctccttttgt aaagaggaat ctgcttttga 7440 gctgtcgatg gggcccaatg tgtgtacccg agctctaaaa gtaacttacc tctagttgct 7500 tttgtaaacc ttagttaagt ttgttttcct ttctccccta taaaagggag cccctcagtt 7560 gtaagaaggc atcgaacaga gcaatacctc tgagcgcttc cttctctcta gatttcaagt 7620 tttcttgtat ctttccagtt ccagtgttct taatgcaatt tgaagtcttc atactctatg 7680 tcattctgtt catagttctt ttccgctacc tatactctgt gatccaaatt tttaatttgt 7740 gatctgttta atc 7753 //