ID   HQ918255; SV 1; linear; genomic RNA; STD; VRL; 2100 BP.
XX
AC   HQ918255;
XX
DT   31-JUL-2011 (Rel. 109, Created)
DT   31-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Leek yellow stripe virus isolate Spanish polyprotein gene, partial cds.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2100
RA   Lunello P., Mansilla C., Sanchez F., Fresno J., Conci V., Ponz F.;
RT   "Identification of garlic viruses in Spain";
RL   Unpublished.
XX
RN   [2]
RP   1-2100
RA   Lunello P., Mansilla C., Sanchez F., Fresno J., Conci V., Ponz F.;
RT   ;
RL   Submitted (24-JAN-2011) to the INSDC.
RL   Biotecnologia, CBGP, M-40 km 38, Pozuelo de Alarcon, Madrid 28223, Spain
XX
DR   MD5; f036bcd331a7d8eb66cd2c0123b12520.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2100
FT                   /organism="Leek yellow stripe virus"
FT                   /host="garlic"
FT                   /isolate="Spanish"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Mar-2005"
FT                   /PCR_primers="fwd_name: Sprimer, fwd_seq:
FT                   ggnaayaayagyggncarcc, rev_name: M4T, rev_seq:
FT                   gttttcccagtcacgacttttttttttttttt"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1491
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein and nuclear inclusion protein"
FT                   /db_xref="GOA:G0ZCN6"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:G0ZCN6"
FT                   /protein_id="AEK81555.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVFSMYYAMEMSTIKNIHEKCVFFVNGDD
FT                   LIIAVEPGSETFLDSLQNLFQQLGLNYNFDSRTRDKEKLCFMSHMGLLQDGIYIPKLDK
FT                   ERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLERIRKFYCWILEQAPYNELSTLG
FT                   KAPFISEAALRNLYTDCEATEAELARYLELFDNDTPTEEIFEYQAGDELDAGTQASKSQ
FT                   KSSADKSIERRGPLVSQANTNEAKSGGSSSGLNLNRDGDVNVGTTGTFSVPRIKQIPQK
FT                   GIAIPMDGGKSILNLDHLLQYKPSQLCISNTRATRAQFMTWKARLQEEYGVTEGEMSII
FT                   LNGLMVWCIENGTSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAY
FT                   IEMRNSEQAYMPRYGLQRNLTDMGLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSR
FT                   PKLFGLDGNVTTMDEDTERHTAHGVNARMHHLDGAHMQ"
FT   3'UTR           1492..2100
XX
SQ   Sequence 2100 BP; 657 A; 406 C; 498 G; 539 T; 0 other;
     gggaataata gtgggcagcc atccactgta gttgacaact cactgatggt tgtcttctct        60
     atgtattacg ctatggagat gagcactatc aagaacatac atgaaaagtg cgttttcttc       120
     gtaaacggtg acgatttaat tatagcagtt gagcctggtt ctgaaacttt tctggacagt       180
     ctacaaaatc tatttcaaca gctcggtttg aattataact ttgacagtcg aacacgtgat       240
     aaagaaaagt tgtgcttcat gtcacatatg ggtctcctac aagatggcat ttacatacca       300
     aaactagaca aagagcgtat agtgtctata ttggagtggg atcgtgccca acaacctgaa       360
     cataggttgg aagccatttg cgcagcaatg attgaggcgt ggggttatcc agacctttta       420
     gaacggatcc ggaaatttta ttgttggatt cttgaacaag caccatacaa tgaattaagc       480
     acactaggca aggcgccatt catatctgag gcagctttac gtaatttgta cactgactgt       540
     gaagccacgg aagcggagct ggcaaggtac cttgagttat ttgataacga cacacctacg       600
     gaggaaatat ttgagtatca agccggtgat gaactagatg cagggacaca agcaagcaag       660
     agccaaaaga gtagcgcaga taaatctatt gagcgacgag gtccattagt gtcacaagct       720
     aatacaaatg aagcgaaaag tggtgggagt agttcaggtc tgaatttaaa cagagatgga       780
     gacgtgaacg ttggcactac aggaactttt agcgtgccac ggataaaaca aataccgcaa       840
     aaaggtatag ccatcccaat ggacggagga aaatcaatac tcaacctaga ccacctacta       900
     cagtacaaac cgagccagct atgtatatca aacactagag ctacaagagc acaattcatg       960
     acttggaagg caaggttgca ggaagaatat ggcgtcactg agggtgaaat gagcattatt      1020
     ctaaatggtt taatggtgtg gtgcatcgag aatgggactt cacctaacat aaatggagtt      1080
     tggacaatga tggacggtga ggagcaagtc gaatttcctt tacgccctgt cgttgaacac      1140
     gcacaaccaa ctctacgtca aataatggca catttttcag cactcgcaga ggcttatatt      1200
     gagatgagga attcagagca ggcttacatg ccacggtatg gattacaaag aaatcttaca      1260
     gacatgggtc tcgcacggta tgcatttgac ttttatgaag ttacatcaag aacaccagtt      1320
     agagcgcgcg aggctcacgc acaaatgaaa gcagcggcct tacgtaattc aaggccaaag      1380
     ctgtttggac tagacggtaa cgtcacaaca atggatgagg acacggagag gcacacagca      1440
     catggcgtga atgcacggat gcaccatctt gatggtgcgc atatgcagtg atgtttcggt      1500
     tagcaatcgg ttatgggctt ccatttaaaa agtcccgagt gccaaactcg tattttggtt      1560
     agtgtagtga aactatgatt cactcgttca aggcagtttc tactttaagg atgacttggg      1620
     aattagtagc tcccaatgcc ggccacaatg gtggccacca agagtcaaca cttggtttga      1680
     agttgatcgt ctgaagatct atccggagta cggttttgta aagaaggtgg attcaaattt      1740
     taaggatagt aagtctgaaa ccttaatggt gtataagcaa cctgaatttt gataccccac      1800
     ctttacccta caatggagtg ctactttaaa gactagctag gattgagacc gaaatctcac      1860
     acactggcat ggccagtagt tgatcactta atgatcaggt gactacttta cagtcgagtt      1920
     ggaacccgta gtatcctatc cttacctaat atcgtaagtt ttatttactg gtgtagcgtg      1980
     gttcaaccac cttataaacg ctttgaatat taggatcgag ctgttcgtct gaaggcacta      2040
     agagtggtta gaccatgtgt gcgtttttac gttgcagtaa gagacaaaaa aaaaaaaaaa      2100
//