ID   HQ916873; SV 1; linear; genomic RNA; STD; VRL; 1674 BP.
XX
AC   HQ916873;
XX
DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate FJshaxian capsid protein
DE   gene, complete cds.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1674
RA   Gao R.Z., Cheng Z.B., Zhou Y.J.;
RT   ;
RL   Submitted (23-JAN-2011) to the INSDC.
RL   Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences,
RL   No. 50.Zhongling Road, Nanjing, Jiangsu 210014, China
XX
DR   MD5; 0d5da72ee0fecc0e2231485340c75f18.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1674
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="10"
FT                   /host="rice"
FT                   /isolate="FJshaxian"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Sep-2010"
FT                   /db_xref="taxon:519497"
FT   CDS             1..1674
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:G0ZCH9"
FT                   /protein_id="AEK67383.1"
FT                   /translation="MADIRLDIAPDLIHNDVRQRLSDTIILNNRPTITLLSHFNSLFHE
FT                   SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ
FT                   PIFQTLTNNNLSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL
FT                   EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELSALDADK
FT                   SLLEQTWSGVSSFIETWKVKTKAKDEDQDEYELTGLSALRKGVDGNSVSSPYNDKKFIE
FT                   WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI
FT                   TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYIKLGVEKAYHLAPVIMKKYNLTID
FT                   DIIHFIEIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKADRDRIIKKATTANSSTSNSNSEHGQKIVLNKVTR"
XX
SQ   Sequence 1674 BP; 591 A; 297 C; 285 G; 501 T; 0 other;
     atggctgaca taagacttga catagcgccc gatcttatcc ataatgatgt gcgtcaaaga        60
     ctttcagata cgataattct aaacaaccga ccaacaatca cacttctgtc tcacttcaac       120
     tctctttttc acgaatcaaa tattgttaaa tcaccccaca tcgcgtcatc tcaaactaca       180
     gttaatttat acattcgtaa gcatttactg actcgacttc atgatagatt acaaactgtc       240
     gaaaccagta ctctaccgaa cattactcaa cttaaagaac atattcaaag ttatttccgt       300
     aatgaacatc aacctatttt tcaaaccctg actaacaata atcttagtga tgaattttta       360
     ggtgtaacta cttttggttt aagtttattc gcaacttcga agttggatgc agaacaaata       420
     gaacgagtac aaattgagac cctaactgaa ggaaacgtta cacttaaacc attctccgct       480
     gacggtttag aagtaatttt agatgatagt tacatcggaa taattggaaa aatttctggt       540
     ttagaagtac ataaattgct cgataaatgt tgtcgtgaag ttcctgctca aatgggaata       600
     ttaactgacg aagttaaact tttaatacgt tccggaaaat taagaattga cggtggatac       660
     gatttcaatt gtcctgctag tacaacagac gtgacacact atggcggtta cgaccaatat       720
     tcaagacaaa tgtttgaaaa attgaatttg ttctttaaca tcagtttgag cattattcct       780
     gtttctgcac ttaaaactat tcatgtattt gagaaagaac taagcgcttt agatgctgac       840
     aaatcacttt tagaacaaac atggagcgga gtctcctcat ttatcgaaac ctggaaagta       900
     aaaactaaag ctaaagatga agatcaagat gagtacgaac taactgggct gtctgcactt       960
     agaaaaggag tcgatggcaa ttctgtatct agcccttaca atgataagaa attcatcgaa      1020
     tggtattcta agacgtttgc taaaatagag aaaggttcat cgttgcgtaa gaccgaaatt      1080
     gaagacaaaa atacatccgg cacctcaaac ataacaaagc aagttaaaat tcattttcct      1140
     gttcagtatt tcgatgaagt caaatctaac ggtcatgaaa aaagtgttac tgtaatcact      1200
     aataaaggtg aaatgtcatt ggaatcttac cgaaagatag gtgaaatatt aagtgcgatc      1260
     tggaaacgtg gtaaggcatt agctgctccc tgcatcgatt acatcaaact tggcgtcgaa      1320
     aaagcttatc atttagctcc tgtaatcatg aagaaatata atttaactat tgatgatata      1380
     attcatttta ttgaaattgg tccttcatac ttagcgaaat tggataaaat tgatgattgg      1440
     tccttaattg caaaattgat tattaccagt gttttgccaa acatcattca agcggtgtat      1500
     aaaacagatc ctagcaataa tgttatgaat tcagttatta ttagcagagc caacaattta      1560
     ttgaaggcgg atcgcgatcg tataattaag aaagctacca ctgcaaattc atctaccagt      1620
     aattcaaatt cagaacatgg tcaaaagatt gtgttaaata aagtcaccag atga            1674
//