ID HQ871942; SV 1; linear; genomic RNA; STD; VRL; 7026 BP. XX AC HQ871942; XX DT 21-MAR-2011 (Rel. 108, Created) DT 23-JUN-2011 (Rel. 109, Last updated, Version 3) XX DE Rose rosette virus segment RNA1, complete sequence. XX KW . XX OS Rose rosette emaravirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Fimoviridae; Emaravirus. XX RN [1] RP 1-7026 RX DOI; 10.1099/vir.0.031146-0. RX PUBMED; 21471323. RA Laney A.G., Keller K.E., Martin R.R., Tzanetakis I.E.; RT "A discovery 70 years in the making: characterization of the Rose rosette RT virus"; RL J. Gen. Virol. 92(Pt 7):1727-1732(2011). XX RN [2] RP 1-7026 RA Laney A.G., Keller K.E., Martin R.R., Tzanetakis I.E.; RT ; RL Submitted (11-JAN-2011) to the INSDC. RL Plant Pathology, University of Arkansas, 495 N Campus Dr PTSC 217, RL Fayetteville, AR 72703, USA XX DR MD5; 814cb6d3fb2bfb92b1da647106621829. DR EuropePMC; PMC4178757; 25100845. DR EuropePMC; PMC5552725; 28848524. XX FH Key Location/Qualifiers FH FT source 1..7026 FT /organism="Rose rosette emaravirus" FT /segment="RNA1" FT /host="Rosa multiflora" FT /mol_type="genomic RNA" FT /country="USA:Arkansas" FT /collection_date="May-2008" FT /db_xref="taxon:1980433" FT CDS complement(89..6919) FT /codon_start=1 FT /product="RNA-dependent RNA-polymerase p1" FT /db_xref="GOA:F2YBR2" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/TrEMBL:F2YBR2" FT /protein_id="ADZ54688.1" FT /translation="MPPDVLSKFLRIAGTTLKNYTLTSKKKNIEKVYKQCTIDINFPKE FT LVHLAEQILYMSPDPSQIDIVVTVIGLLELSRHDTLMMHVNDLLQSAGYNILGYDKPIK FT EVYPEINSILTPDVYFQIDDERYILELKVRNAKTDLDVFYHRYKNAIGNCGISIGVFNV FT SPSGFIETGDYRLTNLINIDPDRISDVTYCIELCSSLREKYGKYPEFFFFSHDRMLADN FT SEPFIETGYKNSVSEHADYKEISCLFGKHWPTIMDDIENFSLLTNPDVTTEKLLDANKN FT LYEDCNDRYDKFMEHLQYNYLNTESYGPTCLKDANLVSKLDKKNSEVYNITKKYKPAIY FT IPFFFSFFLDKYDYKRSLFYRSAFVDMKPAHDNYTNSVINLIDSIFNTVAIELIIKKND FT EIDPAIYREVLSPEFCRHINDKTTKFKKIATISNVTSDTTILNNNAFSINHHVDKHMKD FT NIIGFKNKHYNEKVLKKDCISVADSEEDIITLKRYMGEIFNSEYHVGTYANELVSIDSD FT NMNTHICDLPEVCRTKYLDHLYSQHNIFKALISLNTVNSHKYRLVQTADPCTILITLPN FT SDTLKSAPLRYFTLTIISKKDLVSFEANRLLGVAHELIHGRNYNIILSKVISLDVTRLK FT LLNHSFGKYCLIMTYYSNMKKKIKHDIHFMIWILCQFITIASLTVTDTYKNFIKAVYSD FT YSNIDNLIDDKLESRPTTLGHAYIIKRCLDGIVKATQQLKVINQKKRNEEIDDMGELQN FT TGFNNNLSLKLPISNLSVDNPKEIIHEAFMLFYLGNKGLHGSPQELLNLYHTPYKFEKE FT YSEMLDKYGTILQETGNNSSMSISYNVMKKTSMVAYANLFNKKDAVRQSICSELEFDKP FT VLSLKQFSSTKSMVSNTKTDYVPAPSRLKDSTDIQILEKIINESIIEDDHQFMQLINSE FT VYRINAKRLKEEQKNPDMNVTLLPEIYIETIKGVRFIKIKRHQYTRMVNGGYIKQSNAK FT VFDEFYKLTEEYGLLSLKDAYKKMIHDDDLLIRIFYKDQRTADDREIYTGNAQTRLCLY FT PIEKTYKAICKHIPGEAITISGDQKQKKLLEQRLTLIKEKRQKIRDNKDAEIYSVSSDA FT SKWSARDLFLKFIIVISTNPFLHPDEKWFLTFLCFRYYKRNIVLTDNIFNDMLNLVNVN FT SANTSYEEMTNDFKQNYFTVRSNWLQGNLNMISSFVHHCSTLYTEAMLKIFSDHNRLEC FT NMTSMVHSDDSTYDFLICTGTKNQQKAINKGIINKTNIGKLIIALITFSNKFHCITLNE FT KKTYISTFYKEFLSTIIVGNELFFFYLADLLPLTSDTSYASPMQDLASYSGYINNAFSH FT ACPLNMIKTSVILINHLTVSTYNMQYTSDKNPRFHIDSSDLPIQIYPRYKLPLNLAGMI FT PYYAADAFNILSDIIEKLNKFKILQTELIEDMLDVNTIEKYLEITRVNSPKVYKYIKSC FT ILCMDYTQYERDDADPYNIIDYDLSQKSIINVVSLNKGLRLKKTYTYKKYLEHESEIRL FT KAAIHPEWCVKKPTDPDLIKANILQDYTNPNFRDGLIFSTPAIDYGRRIIGSNKNMYTI FT SSHVMEKDKAKTIGTVYKDLSSKIDEVTLTANDLQRYLSLYLLSDKKILMAMQVFYSKV FT ETVTMARPSYTKVIQPRSIYAEDFGKYSNTSLIQSLLTSRYCIINSIDPKSDKFIDICD FT YVLKRIGDTKIYENQEDIDDDYIAYYKFKYPNSPDIAIDVEPITDLGEVGFMAYKNKLK FT FMSLLVRYYNDIKRTLNNPSFNIPNYPSPSSLIMTIDSLLKKDEISTKVYLSNSKSTKY FT DEYLLTRYGMYAYNDFHIKYKLGYKIKIASSGKIASNLQTYRDTYEPLAFITKLIARNL FT NLYNRLKEHPEFMSGHYNSHELLNVLQNGKDINSSALLFMMGKIEFPRFITSLITDHRV FT YNHWLIPTNSEANDKNASLAYYMCQGNVMKVRTFTQNNVVVFSMMYYKYLRTDYGALES FT IKKKIASDYVELLRISKITSNITPTERYHVFNINEYGRYTNHFGDRVFNVCPIHYAKII FT EVQPSYIEVDGNVKLILTITTNHEELAFDVRLRTYIDDEYYLNCLIDNLHIERNYILGY FT LCETNLFHKYPDYLKPVLIDLGPNQLISLMTGYTEFDIVTERINPQKFGNLIFFSNYFH FT EHGNSYMGNLCECVQLIALGQNIDVMASKDPDRFINSCNKIKLGETCADKVIKNYRANE FT IAPYHRLFITIMKYRHQSDPIEKIILFIILIFKFYIHDFIDMNDELEF" XX SQ Sequence 7026 BP; 2187 A; 1090 C; 1057 G; 2692 T; 0 other; agtagtgttc tcccttaaat cattctaatc tagacaaaat ccaaaagaaa gcaataaagg 60 tctaaaagaa atagtgcgtg taatttatct aaaattctag ttcatcgttc atatctataa 120 aatcatgtat ataaaattta aaaatcaaga ttatgaatag tataatcttc tcaattgggt 180 cactttgatg tctatatttc ataattgtaa tgaacaacct gtgatatggt gcaatctcat 240 tagcacgata attctttatc actttgtcag cacatgtttc acctaatttg attttgttac 300 aactattgat gaatctatct ggatctttag atgccatgac atctatattt tgacctaatg 360 ctatcaattg gacacactca cacagattgc ccatataaga attaccatgc tcatggaaat 420 aattgctaaa aaagatcaaa ttgccaaact tctgtgggtt gattctttca gtgacaatat 480 caaattcagt gtaaccagtc attaatgata ttagctggtt aggtccaaga tctattagta 540 caggcttcaa gtaatcaggg tatttatgga aaagattagt ttcacataga taacccaata 600 tataattacg ttctatgtgt aaattgtcta ttaaacagtt taagtaatac tcatcatcta 660 tataagtcct gagtcttaca tcaaatgcca actcttcatg attggttgtt atagttaaaa 720 tcagtttaac atttccatcc acttctatat aactaggttg aacttctatg attttagcat 780 agtgtattgg gcatacatta aagactcgat ctccaaagtg gtttgtatat cttccatatt 840 catttatatt aaacacatga tacctctcag tgggtgtgat attacttgtg attttagaga 900 ttctcagcaa ctctacataa tctgatgcta ttttcttttt tattgattct aatgcaccgt 960 aatcagttcg taaatatttg taatacatca ttgaaaatac aaccacattg ttttgagtaa 1020 atgttctaac cttcattaca ttaccttgac acatgtaata tgctagtgat gcatttttat 1080 catttgcttc agagtttgtt ggtattaacc aatggttgta tactctatgg tcagttatta 1140 gcgaagttat gaatcttggg aattctattt tacccatcat gaagagtaat gcactactat 1200 taatatcttt cccattttgc aacacattta acagctcatg ggaattgtag tgaccactca 1260 taaattcagg gtgttctttt aatctgttgt agaggttcag atttcttgct attaattttg 1320 ttatgaatgc taatggttcg tatgtatctc tataggtttg taggttgctt gctattttac 1380 cactagatgc aatctttatt ttataaccca acttgtattt aatatgaaag tcattatatg 1440 catacattcc ataacgtgta agaaggtact catcatactt agttgactta ctgtttgata 1500 aatacacctt ggtgcttatc tcatctttct ttagtaaaga atctattgtc ataattaaag 1560 atgagggtga tggataatta ggtatgttga aacttgggtt gtttaaagtt cttttaatat 1620 cattataata tcgcactaat aaagacataa actttagttt attcttgtat gccataaagc 1680 caacttctcc aagatctgtg ataggttcaa cgtcaatggc aatgtcaggt gaattaggat 1740 atttgaattt ataatatgca atataatcat catctatatc ctcttgattt tcatatattt 1800 ttgtatcacc tattcttttt aaaacataat cacatatgtc aatgaattta tccgacttag 1860 gatcaatcga gttaattata caatacctag aagttaataa agattgtatc aatgatgtat 1920 tagaatattt accaaagtct tcagcataaa tgctccttgg ttgtataact ttagtgtatg 1980 atggtcttgc cattgtgaca gtttctactt tagaatagaa aacctgcata gccattagta 2040 tttttttatc acttaaaagg tataaactta agtacctctg taaatcgtta gcagttagtg 2100 tcacttcatc tatcttagaa gataaatctt tatatactgt acctatggtt ttagccttgt 2160 ccttttccat aacatgggaa cttatagtat acatgttttt atttgaacca ataattcttc 2220 tgccataatc aattgcagga gttgaaaaaa ttaatccatc tctaaaatta gggttagtat 2280 aatcctgcaa gatgtttgct ttgatcaaat ctggatctgt aggcttcttc acacaccatt 2340 caggatgaat agctgcttta agccgtatct cactttcatg ctcaagatat ttcttgtatg 2400 tgtatgtctt ctttaatctt agacccttgt ttaagctgac aacattgata atggactttt 2460 gactcaagtc atagtcaatt atgttatatg gatcagcatc atctctttca tattgtgtat 2520 aatccataca caggatacaa gattttatat atttatacac tttggggcta ttaactctgg 2580 ttatttcaag atatttctca attgtgttaa catctaacat atcttcaatt aactctgtct 2640 gtaggatctt aaacttattt agtttttcta ttatatcact taaaatatta aatgcatctg 2700 ctgcataata tggaatcata cctgctaaat ttaatggcaa cttgtatctt ggatatattt 2760 gtattggtaa atcagagcta tcaatgtgaa accttgggtt tttatctgat gtgtattgca 2820 tgttgtaagt tgacacagtc aaatggttta ttaaaataac tgaagttttg atcatattta 2880 aaggacatgc atgggaaaat gcattgttga tatatcctga atatgatgct aaatcttgca 2940 taggtgaagc ataacttgta tcagatgtca aaggtaacag atctgccaaa taaaagaaaa 3000 aaagttcatt tcctacaatt atagtagaca aaaattcttt ataaaatgta cttatataag 3060 tttttttctc atttaatgtg atgcaatgga atttattaga aaatgttatt aaagcaataa 3120 tcaattttcc aatattagtt ttgtttatta tacctttgtt tatggctttt tgttgatttt 3180 ttgtccctgt acagattaag aaatcatatg tggaatcatc agaatgaacc atagatgtca 3240 tgttacactc tagcctattg tgatctgaaa atatcttgag cattgcttct gtatatagag 3300 tagaacaatg atgaacaaaa gaagaaatca tgtttagatt accttgtagc caattacttc 3360 taactgtgaa ataattttgt ttaaaatcat ttgtcatttc ttcatatgat gtgtttgcac 3420 tgttgacatt aactaaattg agcatatcat tgaagatgtt atctgtgagg actatatttc 3480 ttttataata tcgaaaacat aaaaatgtta agaaccactt ttcatcagga tgtaaaaatg 3540 ggttggtaga gatcacaatg ataaatttta ggaataaatc tcgagctgac cattttgatg 3600 catctgatga aactgaatat atttcagcat ctttattatc cctaatcttc tgtctttttt 3660 cttttatcaa ggttaaccgt tgttctaata gttttttttg tttttgatcc ccacttatag 3720 ttatagcttc accaggtatg tgtttacata tagctttgta tgttttctct attggataaa 3780 gacacaatct agtttgtgca ttaccagtat agatttcccg atcatcagct gttctttggt 3840 ctttataaaa tattcttata agtaggtcat catcatggat catcttttta taggcatctt 3900 ttaagctcaa taaaccatac tcctcagtta acttgtaaaa ctcatcaaag actttagcat 3960 tactctgttt tatgtaacca ccatttacca ttcttgtata ttgatgtctt tttatcttta 4020 taaatctaac accctttatt gtttctatgt atatctcagg aagaagtgta acattcatat 4080 cagggttctt ttgctcctcc tttaatcgtt tagcattaat cctataaact tcagaattaa 4140 ttagttgcat gaattggtga tcatcttcaa ttatagattc attaataatc ttctctagta 4200 tctgtatatc tgtactatct tttaaacgac taggtgctgg cacataatca gttttggtgt 4260 ttgataccat agattttgtg ctagaaaact gcttaagtga taatactggt ttatcaaatt 4320 ctaattcact acatatgctc tgtcgaactg catccttttt gttaaataaa ttggcatatg 4380 caaccataga tgtttttttc atcacattgt atgaaatgga catagatgaa ttattaccag 4440 tttcttgtaa tattgtgcca tatttatcta acatttcact atattccttt tcaaatttat 4500 atggtgtatg atataagttc aataattctt gtggagagcc atgtaagcct ttattaccta 4560 gataaaaaag catgaatgct tcatggatta tttctttggg attatcaaca ctgagattag 4620 atattggtag ctttagactc aagttgttgt tgaaacctgt attttgtaat tcacccatat 4680 catctatttc ttcatttctt tttttttgat tgatcacttt gagctgttgt gttgccttaa 4740 caataccatc tagacacctt tttattatgt atgcatgtcc tagtgttgtt ggtctagatt 4800 ctaatttatc atctataaga ttatctatat tagaataatc cgaatataca gccttaatga 4860 aattcttata tgtatctgta acagttaatg atgctattgt tataaactgg catagtatcc 4920 atatcataaa gtgtatatca tgtttgatct tttttttcat gttggaataa taagtcataa 4980 ttaggcaata ctttccgaaa gaatggttaa gtagtttaag tctagtcaca tccaaactga 5040 ttacttttga tagaatgatg ttgtagtttc ttccatgtat caactcatgt gctacaccta 5100 ataggcgatt tgcttcaaaa cttacaaggt cttttttaga tataatagtt agagtaaagt 5160 accttaaagg ggctgattta agtgtgtcag agtttggcag cgttatgagt atagtgcatg 5220 gatctgctgt ttgtaccaac ctatacttgt gtgaattgac agtatttaac gatatcaaag 5280 ctttaaagat gttatgttga ctatataagt gatctaaata tttagttctg caaacttctg 5340 gcaaatcaca tatgtgtgta ttcatattgt ctgagtctat agagactagt tcattggcat 5400 aagttccgac atggtattca ctattgaata tttcacccat gtatcttttt agagttatta 5460 tatcctcttc actgtcagca actgatatac aatctttctt caacaccttt tcattgtagt 5520 gcttattttt gaaacctata atattatctt tcatatgttt gtccacatga tggttgattg 5580 agaatgcatt gttgtttaag attgttgtat cactagtaac attggatatt gtagcaattt 5640 ttttgaattt tgtagttttg tcatttatat gtcgacagaa ttcaggtgat aatacttctc 5700 tataaattgc aggatctatt tcgtcatttt ttttaataat taactctatt gcaactgtat 5760 tgaaaattga atctataaga tttataacag aattagtgta attatcatgt gcaggtttca 5820 tatctacgaa agcactccta taaaatagag atctcttgta atcatactta tccaaaaaaa 5880 aagaaaaaaa aaaaggtata tatattgcag gtttatattt tttagttata ttgtaaactt 5940 cagaattctt cttatcaagt ttggaaacca aattggcatc ttttaaacat gtaggtccat 6000 atgattctgt gtttaggtaa ttatattgta gatgctccat gaatttatca tatcgatcat 6060 tgcaatcttc atatagattt ttattggcat ccaacagttt ttctgtagta acatcagggt 6120 ttgttaacaa actgaagttc tctatatcat ccattattgt gggccagtgt ttaccaaata 6180 gacaactaat ttccttgtaa tcagcatgtt cagagacact attcttgtaa ccagtttcaa 6240 tgaatggttc tgaattatct gctaacatcc tatcatgtga aaaaaaaaaa aattcaggat 6300 acttcccata tttttcacgt agtgaagaac atagttcaat acagtaagta acatcactga 6360 tacgatctgg atcaatgttg ataagattag tgagccgata atcccctgtt tctatgaagc 6420 cagatggtga gacattaaaa acaccaatac ttataccaca gttacctata gcatttttat 6480 atctgtgata aaatacatcc aaatcagttt tggcatttct aactttaagc tcaagtatat 6540 acctttcatc atcaatctgg aaatatacat ctggtgttag gatactgttg atctcaggat 6600 atacttcttt gattggctta tcataaccca aaatgttata accagcagat tgaagtaagt 6660 catttacatg catcattaat gtgtcatgcc ttgacaattc tagcaatcca atgacagtga 6720 ctactatatc tatctgactt ggatcaggtg acatatacaa tatttgctca gcaaggtgga 6780 ccaattcttt ggggaaatta atatctattg tgcactgctt atagactttc tctatatttt 6840 ttttctttga tgttaaagtg tagtttttca gtgtggtccc tgcaattcga agaaatttag 6900 aaagcacatc aggtggcatt gcattacctg accgaatctt agtgatcgca tcattgtaaa 6960 tcaaaccttt ttttagcttc cataattgct tttgaattta aattgtattt aagggagttc 7020 actact 7026 //