ID   HQ848381; SV 1; linear; genomic DNA; STD; VRL; 1288 BP.
XX
AC   HQ848381;
XX
DT   31-MAY-2011 (Rel. 109, Created)
DT   31-MAY-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Tomato leaf curl Patna virus-[Jatropha:Lucknow:2010] coat protein (AV1)
DE   gene, partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication-associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Tomato leaf curl Patna virus-[Jatropha:Lucknow:2010]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1288
RA   Snehi S.K., Raj S.K., Srivastava A.;
RT   "Begomovirus associated with mosaic disease on Jatropha multifida in
RT   India";
RL   Unpublished.
XX
RN   [2]
RP   1-1288
RA   Snehi S.K., Raj S.K., Srivastava A.;
RT   ;
RL   Submitted (05-JAN-2011) to the INSDC.
RL   Plant Molecular Virology, National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U.P. 226001, India
XX
DR   MD5; c00efcb7f4646379ef2820ef8a809235.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1288
FT                   /organism="Tomato leaf curl Patna
FT                   virus-[Jatropha:Lucknow:2010]"
FT                   /segment="DNA-A"
FT                   /host="Jatropha multifida"
FT                   /isolate="Lucknow"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collected_by="S. K. Snehi"
FT                   /collection_date="Oct-2010"
FT                   /db_xref="taxon:1034891"
FT   gene            <1..423
FT                   /gene="AV1"
FT   CDS             <1..423
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="involved in encapsidation of virion"
FT                   /db_xref="GOA:F6L7A3"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:F6L7A3"
FT                   /protein_id="AEF65945.1"
FT                   /translation="LGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDN
FT                   EPSTATVKNDMRDRFQVLRKFNATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYD
FT                   NHTENALLLYMACTHASNPVYATLKIRIYFYDSVHN"
FT   gene            complement(420..824)
FT                   /gene="AC3"
FT   CDS             complement(420..824)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="increases viral replication"
FT                   /db_xref="GOA:F6L7A4"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:F6L7A4"
FT                   /protein_id="AEF65946.1"
FT                   /translation="MDSRTGELITATQAESGVYTWTVKNPLYFKISQHHEKPFLSNNDI
FT                   ITLQVQFNYNLRKALGIHQCFLICRIWTRLHPQTLRFLRVFKYQCMKYLDSLGVISINN
FT                   VIRAISHVLYDVLEGTIDAQLSHIIKFNIY"
FT   gene            complement(565..972)
FT                   /gene="AC2"
FT   CDS             complement(565..972)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:F6L7A5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:F6L7A5"
FT                   /protein_id="AEF65947.1"
FT                   /translation="MQNSSPSRSHCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYFFGL
FT                   DCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPAPRETISIQQRHNNFTSPVQLQ
FT                   PEESVGDTPVFSNLPNLDSFTSSDLAFLKSI"
FT   gene            complement(878..>1288)
FT                   /gene="AC1"
FT   CDS             complement(878..>1288)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:F6L7A6"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:F6L7A6"
FT                   /protein_id="AEF65948.1"
FT                   /translation="TGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLK
FT                   HFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEEKNSALKDLGI
FT                   KNAEFFTLTEPLYSGTHQSPAQNSQEETSSQA"
XX
SQ   Sequence 1288 BP; 359 A; 242 C; 287 G; 400 T; 0 other;
     ttgggtaaga tctggatgga tgagaacatc aagaccaaga atcatacgaa cactgttatg        60
     ttcttcctgg ttcgtgatag aaggcccttt ggtactgcca tggattttgg acaggttttc       120
     aacatgtatg acaatgagcc cagtactgct acggtgaaga acgacatgag agatcgattc       180
     caagtgttac ggaaatttaa tgcaacggtc acgggtggac agtatgcatc caaggaacag       240
     gcgttggtta ggaagttcat gaagattaac aattatgtag tctataatca tcaagaagca       300
     gcgaagtatg acaatcatac tgagaatgct cttttattat atatggcttg tactcatgct       360
     agtaacccag tgtatgcaac attgaagatc agaatctatt tctatgattc tgttcataat       420
     taataaatat tgaattttat tatatgtgat aattgagcat caattgtgcc ctctaataca       480
     tcatatagta catgggatat agccctaatt acattgttaa tactaataac tcctaaacta       540
     tctaaatact tcatacattg atatttaaat actcttaaga aacgcaaggt ctgaggatgt       600
     aaacgagtcc agattcggca aattagaaaa cactggtgta tccccaacgc tttcctcagg       660
     ttgtagttga actggacttg taaagttatt atgtcgttgt tggatagaaa tggtttctcg       720
     tggtgctggg atatcttgaa atagagggga tttttgaccg tccaggtata cacgccactc       780
     tctgcctgag ttgcagtgat gagttcccct gtgcgtgaat ccatgtgatg cgcagtcaag       840
     tccaaaaaag taagagcaac cgcaaggaag atctattcta cgcctgcgaa ctggtctctt       900
     cttggctatt ctgtgctgga ctttgatggg tacctgagta cagtggctcc gtgagggtga       960
     agaattctgc attctttatg cccagatctt ttagtgctga attcttttct tcattcaagt      1020
     actctttata tgatgatgtc gggcctggat tgcagaggaa gatagtggga attccacctt      1080
     taatttgaat gggcttcccg tactttgtgt tgctttgcca gtccctttgg gcccccatga      1140
     actccttaaa gtgctttaga tagtggggat cgacgtcatc aatgacgttg taccaggcat      1200
     cattattgta gacctttgga ctcaggtcaa ggtgaccaca taaatagtta tgtggaccca      1260
     gagacctggc ccacattgtc tttcctgt                                         1288
//