ID HQ830188; SV 1; linear; genomic RNA; STD; VRL; 4824 BP. XX AC HQ830188; XX DT 17-JUL-2011 (Rel. 109, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate p202/3WT segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4824 RX PUBMED; 24623427. RA Margaria P., Bosco L., Vallino M., Ciuffo M., Mautino G.C., Tavella L., RA Turina M.; RT "The NSs protein of tomato spotted wilt virus is required for persistent RT infection and transmission by Frankliniella occidentalis"; RL J. Virol. 88(10):5788-5802(2014). XX RN [2] RP 1-4824 RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.; RT "Genetic evidence for a role of the NSs protein of TSWV for its efficient RT transmission by the thrips vector Frankliniella occidentalis"; RL Unpublished. XX RN [3] RP 1-4824 RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.; RT ; RL Submitted (24-DEC-2010) to the INSDC. RL Istituto di Virologia Vegetale, CNR Torino, Italy, Strada delle Cacce 73, RL Torino, TO 10135, Italy XX DR MD5; 358c0f51017877644e1f614675c9b4cf. DR EuropePMC; PMC4019118; 24623427. XX FH Key Location/Qualifiers FH FT source 1..4824 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="pepper" FT /isolate="p202/3WT" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="1999" FT /db_xref="taxon:3052585" FT CDS 101..1009 FT /codon_start=1 FT /product="NSm" FT /note="putatve movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:E5EW77" FT /protein_id="AEK06238.1" FT /translation="MLTLFGNKRPSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDASKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1333..4740) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="Gn-Gc precursor" FT /db_xref="GOA:G0YUQ9" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:G0YUQ9" FT /protein_id="AEK06239.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEITRGDHP FT EIYDDSAENEVPTAASIQREAILETLTNLMLESRTPGTRQIREEKSTIPISTEPATQKT FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTHECTKVCICNKSKA FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCIARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSVTIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVVPKKPSITSTSL FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGANKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD FT DELEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4824 BP; 1549 A; 865 C; 841 G; 1569 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaacta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 caagaggcct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggcaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttaac 240 caaagccatg gatgcatcca aaggaaagat actgttgaac actgagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgctagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 aaagcaaaat gctaataagg ttatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg 600 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt ctattccaaa 660 gatgaacaac accccagaaa actgttgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaaaggggtt tcttttggta gtgtcatgta ttcttggaca aaagagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtatggt tatacctcta aacagggcca ttagagctag 840 gtctcaagca ttcattgaag cctgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgacagtg ttgctcagtt atcctttgat gaaatatagt tttttaaaac 1020 acttatttaa gcttaaattt ctgtctattt tgcatttcga atccaaaaaa ccaaaacaaa 1080 aaacaaaaac aaaaaagaaa aaacaaacaa aaaaatctaa ccaaaaaaca aaaacaaaat 1140 aaggctgaaa agccaaactt tggtccgaag actctttttg ttgttttttg tttatttgta 1200 ttttttgttt gttgtttttt gtttatttca tatttgcttt ttattagtca atgattgatt 1260 ctaaagattt tatatatata aaatcttgct aatatagaag attgaatcaa atttaatctg 1320 tgacaagcat cctcagacaa ggtgagagaa atccataggt ggccttcgtc ttgtcattgt 1380 atctttcatt aacatagggg ctttgatctc aagttcatca tcatcctcta tcttggatct 1440 agatttataa gatttatgct ttacatatcc tttacaaatg gatgtcagaa tagaacagaa 1500 ataaatcaca aggaaaatga atgcaataag cagtaccact ctgatagtat caaaaaatga 1560 gccaaaataa cttgcaatga aattgaatgg acttttaata taatcccaaa agccccatgc 1620 agaagaatca gaattatatt gttgttcttc atgagcatac tcatcatttt gatctattat 1680 attctctggt tcttctataa taacattatt aaccaaaact tccacagata tatccggatt 1740 gccttctgga tacagtgtca ttttcttctt gtcggggttg gctgaacaaa acattgttat 1800 attgtattta ttagctcctt ttttaacagc cagctgataa gtagataaag agcaagcgtc 1860 tatagaaatt gcagtagaaa atgtcaaatc tgagaaaaat tctaaaatgc aagataaacc 1920 ttggccgcat agaagacagc cgttgcaatt taagcttgtt gaagttatgg aaggtttttt 1980 aggaacaact ttaaaaagat cagatggaag atcaactaca attttcagtt tccctaaact 2040 aaaagatttt tccaggaaaa aactagagaa atctttgaaa ctaacaggaa tatctgatat 2100 ttgctctaaa ccagatctaa acctgtatgt gtcatatcca catgttttaa tagtgactga 2160 tttttttcct attgctgcac aatcccaaga catgtcatct ccttctagag ttttcttagt 2220 aaaaataggc actccatcat gggtcaattg cggatgacca aacattttca caggatcatt 2280 caagtttgca atatttccag agtaaatatg gctgtcaggt ccatgagcta ttagttcacc 2340 tatagtgata ccatcattat gcaaatctgc ctgtatatca gcttgaaaca atgtattttc 2400 ataaggaact tcttcagtaa tccttgagca ttgacctccc aaaataccag aaatacaaac 2460 atctgctact atagttgatt tgagcactga ataaatccta tatgatttgt ccatatcata 2520 aatatttcga cagaatccgc atgtagcacc ctcattaatt gcaaaacacc aagcttcttc 2580 acatccccaa taagaagttg gtgttataca aaaatcttgg aaacctgtta aagcttgatt 2640 tttcctgcaa gtgtcgcagt ttcctgtaca agtggaataa aaatccgtat gggtgctttg 2700 gatgggagct gttgtatatt tttctgacac ttcataatga attcccacac ttttgatata 2760 aatcacaaat tttttggctg tttctgaggt cttgtcattt agcatgaata tagttcctcc 2820 tcctcccaaa agagattgtt ctatcatata tctatatttc ccgtctacaa cagaatcaaa 2880 gattaatgat tgcctgggca ggatgttctc tggtatgctt gtttcatttt tgtctaaaga 2940 gtctcctgca atcattccag aaattttgtc tgtacgatta taggaatcta ttataccatt 3000 tctcaatctc ttagcctcat acagaccaac tgatgttaac cctaaagagc ttcctgtata 3060 atccgaaaac ccattgtaca aaggtttgtt ctgaaataaa tctaggtatt cgcaacctaa 3120 tctgcatttt ataagattat caatagatgg gcgtgcaatg caattctggt tctctatgca 3180 atcattagga ccttctataa caatattagt gccaaagata ctttctatga tcttgtcttc 3240 ttttacattg cagtaacatt gatctttttc agggcatttt tcaaatttgc ttgtaaccaa 3300 aaatggacag cctggaacat aaaagcatcc actcaaacat tgggttgttt gagccataga 3360 catgggcatc tgagacaaaa tgactaaacc tatcaaaatt tcggtcacaa attttagcaa 3420 actcaagctc agcttagtgt tcactattag atggaaccat tccatgctag tccacttatg 3480 tttgttgtag tcatgatctg cctctttgga caatatagga cactctgaag aatgctcttt 3540 tgaagctttg cttttgttgc aaatgcagac tttagtacac tcatgtgtga ctatgcacaa 3600 attgccacag ttagaacatt taaatgggaa atatttccat aagcaattta tgagcaataa 3660 gacagggtat gtgatcaagc ccataagatc ataccagaga aagagaggtt tagtcgtctt 3720 gttcactaac catcggatag ggaaatagat caacaaagct atcaatatca atcttatcca 3780 agaaaaattg atgcaggctg tttgcttata aatacttttt gaatatttga ttatgcaatc 3840 tctgactctt ttgtttgttt ttggtatttt agctgatttg tcaccgcata agagattgtg 3900 ttcaccatcc aacatttcct cggtaaaagt gatacttgct gatccagaaa aagctataac 3960 cttgtgttcc acattttcac caggtttttt tatcaaataa cccatgatct tctcagggct 4020 agtgatgctc acagtatagg gatttgcaaa gtttgattta gttattttgc agtcaccaga 4080 taactttaca gtttgtaatg atactgttcc attagtgggg tatgagttgt aagttatagg 4140 ataattatct tgtgtcaggc tttctgaaat gaagaatttt gttcccactg aaaaatgtct 4200 tttgttgtca agtttggtaa taggaataac tgggactttg gagaatctct ttggtaaatt 4260 taaagaatta tcacattttt ctaaaccttc tgcagaatca gaaacacagg aatatatgac 4320 accattgttt tcaacttgat aataaacatt ataagtagat atccctttta tctcacattt 4380 taatgaggaa gcattcaagc agttgttggg aagatccaaa acagagattg ttttttgcgt 4440 tgctggctca gtggaaatag ggatggttga tttttcttct cgtatctgac gggttccagg 4500 agtccgagat tctagcatca gattagttaa agtctccaag atagcttcac gttgaatcga 4560 tgcagcagtg ggtacctcat tctcagcaga atcatcataa atctcaggat gatctccacg 4620 agttatttct actttagcat ctgtggctct gaagatcaag aatgccaaca aaacagaact 4680 cagggcaatt gtgaaaagac tcacttttac cactagttct agtagtttta gaattctcat 4740 cttagatgtc tacccagatt acaatggttg tgtgattaat ttcaagatgt ctggattaag 4800 gtttttgttt gcactgattg ctct 4824 //