ID HQ694978; SV 1; circular; genomic DNA; STD; VRL; 7723 BP. XX AC HQ694978; HQ005308; XX DT 04-APR-2011 (Rel. 108, Created) DT 21-APR-2011 (Rel. 108, Last updated, Version 2) XX DE Sweet potato caulimo-like virus isolate Mad1, complete genome. XX KW . XX OS Sweet potato collusive virus OC Viruses; Ortervirales; Caulimoviridae; Cavemovirus. XX RN [1] RP 1-7723 RX DOI; 10.1007/s00705-010-0886-7. RX PUBMED; 21184242. RA De Souza J., Cuellar W.J.; RT "Sequence analysis of the replicase gene of 'sweet potato caulimo-like RT virus' suggests that this virus is a distinct member of the genus RT Cavemovirus"; RL Arch. Virol. 156(3):535-537(2011). XX RN [2] RP 1-7723 RX DOI; 10.1099/vir.0.029975-0. RX PUBMED; 21307225. RA Cuellar W.J., De Souza J., Barrantes I., Fuentes S., Kreuze J.F.; RT "Distinct cavemoviruses interact synergistically with sweet potato RT chlorotic stunt virus (genus Crinivirus) in cultivated sweet potato"; RL J. Gen. Virol. 92(Pt 5):1233-1243(2011). XX RN [3] RP 1-7723 RA DeSouza J., Cuellar W.J.; RT ; RL Submitted (29-JUL-2010) to the INSDC. RL Integrated Crop Management Division, International Potato Center (CIP), Av. RL La Molina 1895, Lima L12, Peru XX RN [4] RP 1-7723 RA Cuellar W.J., De Souza J.A., Barrantes I., Fuentes S., Kreuze J.F.; RT ; RL Submitted (09-DEC-2010) to the INSDC. RL Integrated Crop Management Division, International Potato Center, 1895 La RL Molina Av., La Molina, Lima L12, Peru XX DR MD5; c615d34e900e5675058928ae2d46471d. XX CC On Apr 4, 2011 this sequence version replaced gi:312844530. XX FH Key Location/Qualifiers FH FT source 1..7723 FT /organism="Sweet potato collusive virus" FT /host="sweet potato" FT /isolate="Mad1" FT /mol_type="genomic DNA" FT /country="Portugal:Madeira" FT /collected_by="Brunt A." FT /collection_date="1988" FT /db_xref="taxon:930168" FT misc_feature 1..18 FT /note="region complementary to the 3' terminal end of the FT host tRNA-Met; recognized by the viral reverse FT transcriptase as the transcription initiation site; FT characteristic of pararetroviral genomes" FT CDS 55..3849 FT /codon_start=1 FT /product="coat protein/movement protein" FT /note="ORF 1; polyprotein" FT /db_xref="GOA:F2XXY4" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:F2XXY4" FT /protein_id="AEA36696.1" FT /translation="MDKEFNNLNIGQHVYKISENKLPINSFLKWPGYTHATFTPYVVIG FT DAGDYPHRQLNWTNKFLWNKLGNLNNNDINILRKPIITEEDKKELSEEAKKIIDEKFED FT RIKYLKNINQTLDLKWFKFEQEQNKKTEELLDTLRILNKELKQLKEEIKNIKKKNEEII FT YPPNTYTINMVTEEGKKFDQFLYMEQLERERISKEQAIEKILENTYILNNNIGYSINRI FT ETLNTNVRTNKRPETILDTPQYAKYREQQRIIKEEIKNEPKDNEYEQFMNWKKDKEKEK FT LEFEEAERIRKGKNKVIIIPDIMPDPPKEDINQQLLRIIEEMRKEIKELKTVKEDVEHL FT KIQLKQDDIQMMLESENELDPDNLDKEEVIEKIQNINIESEEENKSEESNSTSESESES FT IEPELNVKEEQYEEDDRRQYKPYSKKYKTNVRYARNINGQENRRSDYINRRRTQFEPNY FT IHTDIGENGEALNLNCIDAKESEERIEKWAQSMSITIAKQNMTNDNAKKFIIRTLLGDV FT KDWYENLTESAKSQLEGTSALSTLANIEVAIRAEFGKLGIENDATKMTRKKNSARAKLM FT QLSICNMRMENLKAYICEFKEYFYKAAYSDEEREQILDIFYTKLPDPWGMSILEAYNLN FT EKGRITLDSLGSRITYLFESITSRCEQDRMNKIAKKTMKLDCGYYEVGQYGCKTKNYKK FT KTYKKRKKRYIPIYRKNKPKPWMKYYRPKNKIKRNKKPCTCYNCGEIGHISPNCKKPKK FT SNKTINNIEMIEFIGDQEELEFIINDNDIIYIEQFIDTENSDIELEMEFGFDEINMFQE FT SESSESSIIRSNDESEQDRPTKMIFSKEKFSQIIEKDLDLTKNDIFKNKNLKQLFGKKD FT TEYFIVTDIEHPIDVKYVQNMEQKVNLPLYNQQIFEKEIQKIPDKDKNKIKNIHLAAVE FT VIIKGYFREGIDTPIELLLCDDRIVYPNNGSIIATLVGNLIYQQVKFKKIINYSISVRD FT KNLEKSLVMYWNLDGIKMIENSKIFSIRLRNLYVLSEKHIVKNKKQYTENIIIEPLFQE FT VIQNNDVKYIDYIKPEKDYEQTKMITYKNKFETGESSRKNEQDIGRIIKESKGISNKII FT TLPRESYKQNRNQFHIKGKIGNKYYPILIDTGAARSYISSKIIDEQSIKIKPISESVIS FT IDYNNIRTSYNNEAELDIEIIDLNFKIHNIKFNGLIETIELLEQDKQQVLIGIDTLEQL FT KPYSITSDYLEINIGYKPIKIKRELKDIYELHRQLSQHE" FT CDS 3842..5767 FT /codon_start=1 FT /product="replicase" FT /note="ORF 2; polyprotein; contains an aspartic proteinase FT and reverse transcriptase with ribonuclease H domain" FT /db_xref="GOA:E5KBV1" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041577" FT /db_xref="UniProtKB/TrEMBL:E5KBV1" FT /protein_id="ADR03142.2" FT /translation="MNRMTYMTVKITIPTYMSRIYHGLFDTGANTCVCKTKVLPPEKWI FT EIDNKVLTGFSEEKNVIKYRADNIKIMIAKKEFIIPYIYAMDNINADIIIGATFYNKYS FT PITIDMEKGIIKFTNKGEVYPNYLVKYPRKKVLIPWEKGNPSIIQPLQNEQINNINEVE FT ELNNILGEDIYGDNPLKHWEKHKTYAKIELKNPDDHIYKPPINYQESDYKEFKMHIDEM FT VKEGFIEECKNLENKKYSSPAFIVNKHSEIKRGKSRMVIDYKDLNKKAKVIKHPIPNKD FT ILINRGIKANYFSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYVWIVLPFGYHNSPSIY FT QQFMDGIFRPYYDFILVYIDDILIFSKTYEEHKIHLEIFRNIIIKHGIVLSKKKAEIGK FT QKIEFLGVKIEQGGIELQPHIIDKILEKHIKIKSKKELQSILGLVNQIRNFLPNLSKIL FT LPIQKKLKIKNEEVWEWTKEDEQNIIKLKDYCKDNVIKMTYPVEEKDMNWIIEVDASKE FT YYGNCLKYKKDKIEYICRYNSGTFKEHEKNYDINRKELIAIYKGLEHYAIFTTQGKKLV FT RTDNSQAYYWIKNSKIKNSIDMKNVKGILAKIIMYDFDIEIIDGKTNIVADFLSRNGTD FT DATITG" FT CDS 5697..6893 FT /codon_start=1 FT /product="putative inclusion body protein" FT /note="ORF 3; IBP" FT /db_xref="UniProtKB/TrEMBL:F2XXY5" FT /protein_id="AEA36697.1" FT /translation="MEKLTSLLISCPEMEQMMQQLLAEMQKLNATVEKQNSRIEQLENE FT LEKEKGKKPLTEEKIISEKELEKEKEISWKAKIKKYGEASSKEEKIIEKDVWQKPKGTH FT IGSIYVTEFVRLMNYLNSRHANLNEIYSLTDYNKLVADKNTDERLIRAAYQHGLLHVHY FT IESANQIKMYDEGIVNAYLKLAQLTKAKCIYIRFYTAFAEVTKEGIIPKIEAIKLGITY FT EKIQYDVCEQELFEENRVHDFLRHKKAIGLLTIRRELESTEGNIWVYENRNNRIIYAPS FT RARKEEVKKVVAAWQQKIYTPERNIPDCGITAPCISEPCLKILCELSKNQLVVKHQCKY FT CGKMKKKEEVDYSLPEDIIMKDVDEDSDVEDKKEENAYDKDAFRPDKVADAGDDVKEK" FT CDS 7459..7608 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF a" FT /db_xref="UniProtKB/TrEMBL:F2XXY6" FT /protein_id="AEA36698.1" FT /translation="MAELNYGIANHQDIYQLLIKRVYPIIWSCRKIIVFYDYIAFGSYT FT IEYP" XX SQ Sequence 7723 BP; 3612 A; 788 C; 1200 G; 2123 T; 0 other; tggtatcaga gcatagttat aaatattaaa aatataaagc ttattgagct tagtatggat 60 aaagaattta ataacttgaa tataggacaa catgtatata aaatatcaga gaataaatta 120 ccaataaata gttttttaaa atggcctggt tatactcatg caacatttac accttatgta 180 gtaataggag atgcaggaga ttatccacat agacaattaa actggactaa taaatttctt 240 tggaacaaat taggaaattt aaataataat gatataaata tacttagaaa acccataatt 300 acagaagaag ataaaaaaga attaagcgaa gaagcaaaaa agataattga tgaaaaattc 360 gaagatagaa taaaatattt aaaaaatata aatcaaacgt tagacctaaa atggtttaaa 420 tttgaacaag aacaaaacaa aaagacggaa gaattattag atacgttaag aatattgaat 480 aaagaactaa aacaattaaa agaagaaata aaaaatatta aaaagaagaa tgaagaaata 540 atctatccac caaatacata tactattaat atggtaacag aagaaggtaa aaaattcgat 600 caattcttat atatggaaca attagaacgt gaaagaataa gtaaagaaca agctatagaa 660 aaaatattag aaaatactta tatattaaat aataatatag gatattcgat aaatagaata 720 gaaacattaa atactaatgt tagaacaaat aaaagaccag aaaccatatt ggatactccc 780 caatatgcta aatatagaga acaacaaaga ataataaaag aagaaattaa aaatgaacca 840 aaagataatg aatacgaaca atttatgaat tggaaaaaag ataaagaaaa agaaaaatta 900 gaatttgaag aagctgaaag aattagaaaa ggtaaaaata aagtaatcat aataccagat 960 ataatgccag atccacctaa agaagatata aaccaacaat tattaagaat aatagaagaa 1020 atgcgtaaag aaataaaaga attaaaaact gtaaaagaag atgtagaaca tttaaaaatt 1080 caattaaaac aagatgatat acaaatgatg ttagaatctg agaatgaatt agatccagat 1140 aatttagaca aagaagaagt aatagaaaaa atccaaaata taaacataga atctgaagaa 1200 gaaaataaaa gtgaagaaag taatagtact agtgaatcag aatcagaatc tatagaacct 1260 gaattaaatg taaaagaaga acaatatgaa gaagatgata ggagacaata taaaccttat 1320 tctaaaaaat ataaaacaaa cgtaagatat gcaagaaata taaacggaca agaaaataga 1380 aggagtgatt atataaatag aagaagaaca caatttgaac caaattatat acacacagat 1440 ataggagaaa acggtgaagc attaaattta aattgtatag atgcaaaaga atcagaagaa 1500 cgtatagaaa aatgggcaca aagtatgtct ataactatag caaaacaaaa tatgactaat 1560 gataatgcta aaaaatttat aataagaact ttattaggag atgtaaaaga ttggtatgag 1620 aatttaactg aatcagctaa aagtcaatta gaaggaacat cagcattaag tactttagca 1680 aatatagaag tagcaattag agcagaattt ggaaaattag gaatagaaaa tgatgcaact 1740 aaaatgacac gtaaaaagaa tagtgcaaga gctaagttaa tgcaattaag tatttgtaat 1800 atgagaatgg agaatttaaa agcttatata tgtgaattta aagaatattt ttataaagca 1860 gcatatagtg atgaagaaag ggaacaaata ttagatatat tttatactaa attacctgac 1920 ccttggggta tgtcaatttt agaagcttat aatttaaatg aaaaaggaag aattacacta 1980 gatagtttag gatccagaat aacatattta tttgaatcaa taacttcaag atgcgaacaa 2040 gataggatga ataaaatagc taaaaagaca atgaaattag attgtggtta ttatgaagta 2100 ggacaatatg gatgtaaaac aaaaaattat aaaaagaaga cttataaaaa acgtaaaaag 2160 agatatatac caatatatag aaaaaataaa cctaaacctt ggatgaagta ttatagacct 2220 aaaaataaaa taaaaagaaa taaaaaacct tgtacttgtt ataattgcgg agaaatagga 2280 catataagtc caaattgtaa aaaacctaaa aaatcaaata aaactattaa taatatagaa 2340 atgatagaat ttataggaga tcaggaagaa ttagaattta taataaatga taatgatata 2400 atatatatcg aacaattcat agatacagaa aatagtgata tagaactaga aatggaattt 2460 ggatttgacg aaataaatat gtttcaagaa agtgaatcaa gtgaatcaag tataattaga 2520 tctaatgatg aatcagaaca agatagacca actaaaatga tatttagtaa agagaagttt 2580 agtcaaataa tagaaaaaga tttagattta actaaaaatg atattttcaa aaataaaaat 2640 ctcaaacaac tatttggtaa aaaagatact gaatacttta tagtaacaga tatagaacac 2700 ccaatagatg ttaaatatgt tcaaaatatg gaacaaaaag taaatttacc tttatataat 2760 caacaaatat ttgagaaaga aatacaaaaa attccagaca aagataaaaa taaaataaaa 2820 aatattcatt tagcagcagt agaagtaatt ataaaaggat attttagaga aggaatagat 2880 acaccaatag aattattatt atgtgatgat agaatagtat atccaaataa tggaagtata 2940 atagcaacac ttgtagggaa tttaatatat caacaagtca aatttaaaaa gataattaac 3000 tatagtataa gtgtaagaga taaaaattta gaaaaatctt tagtaatgta ttggaattta 3060 gatggaataa aaatgataga aaatagtaaa atattttcaa taagacttag gaatctttat 3120 gtactaagtg aaaaacatat tgttaaaaat aaaaaacaat atacagaaaa tataataatt 3180 gaacccttat ttcaagaagt aatacaaaat aatgatgtaa aatatataga ttatattaaa 3240 ccagaaaaag attacgaaca aactaaaatg ataacttata aaaataaatt tgaaacagga 3300 gaatcaagta gaaaaaatga acaagatata ggtagaataa taaaagaaag taaaggaata 3360 agtaataaaa taataacttt acctagagaa tcatataaac aaaataggaa tcaatttcat 3420 ataaaaggaa agataggtaa taaatattac ccaatactta tagatacagg agcagctaga 3480 tcatacataa gttctaaaat tatagatgaa caaagtataa aaattaagcc aattagtgaa 3540 tcagttataa gtattgatta taataatatt agaactagtt ataataatga agcagaatta 3600 gatatagaaa taatagatct aaattttaaa atccataata ttaaatttaa tggattaata 3660 gaaactatag aattattaga acaagataaa caacaagtat taataggaat tgatactttg 3720 gaacaattaa aaccctatag tataactagt gattatttag aaataaatat aggatacaaa 3780 ccaattaaaa ttaaaagaga attgaaggat atatatgaat tacatagaca gttaagtcaa 3840 catgaataga atgacttaca tgactgtaaa aattactata ccaacatata tgtcaagaat 3900 ttaccatgga ttatttgata ctggagcaaa tacttgtgta tgtaaaacaa aagttttacc 3960 accagagaaa tggatagaaa tagataataa agtactaaca ggattttcag aagagaaaaa 4020 tgttatcaaa tatagagcgg ataacataaa aataatgata gctaaaaaag aatttataat 4080 accatatatt tatgcaatgg ataatataaa tgcagatata attataggag caacattcta 4140 taataaatat agcccgataa caattgatat ggaaaaagga ataattaaat tcacaaataa 4200 aggagaagtt tatcctaatt atttagttaa ataccctagg aaaaaagtat taataccatg 4260 ggaaaaagga aatcccagta ttattcaacc tttacaaaat gaacaaatta ataatataaa 4320 tgaagtagaa gaattaaata atatattagg agaagatatt tatggagata atcctttgaa 4380 acattgggag aaacataaaa catatgctaa aatagaatta aaaaatccag atgatcatat 4440 atataaacca cctataaatt atcaagaatc agattataaa gaatttaaaa tgcatataga 4500 cgagatggtt aaagaaggat ttattgaaga atgtaaaaat ttagaaaata aaaaatatag 4560 ttcaccagct tttatagtaa acaaacattc agaaataaaa agaggaaaaa gtagaatggt 4620 aatagactat aaagatttaa acaaaaaagc taaagtaatt aaacatccta taccaaataa 4680 agatatatta ataaatagag gaattaaagc taattatttt agtaaattcg actgtaaatc 4740 aggattttat catattaaac tagaagaaga tagtaaaaaa tatacagcat ttacagtacc 4800 acaaggatat tatgtatgga ttgtattacc ttttggatat cataattcac caagtatata 4860 tcaacaattt atggatggaa tatttagacc atattatgat tttatacttg tatatataga 4920 tgatatatta atattttcga aaacatacga agaacataaa atacatttgg aaatatttag 4980 aaatataata ataaaacatg gaatagtatt aagtaagaaa aaagcagaga taggaaaaca 5040 aaaaatagaa tttctaggag ttaagataga acaaggagga atagaattac agcctcatat 5100 aatagataaa atattagaaa aacatataaa aataaaaagt aaaaaagaat tacaatcaat 5160 attaggatta gtaaaccaaa ttagaaattt cttaccaaat ttaagtaaaa tacttttacc 5220 tatacaaaag aaactaaaaa taaaaaatga agaagtatgg gaatggacaa aagaagatga 5280 acaaaatata ataaaattaa aagattattg taaggataat gttataaaaa tgacttatcc 5340 agtagaagag aaagatatga attggataat agaagtagat gcaagtaaag aatattatgg 5400 caattgtctt aaatataaaa aagataaaat tgaatatata tgtagatata attcaggaac 5460 atttaaagaa catgagaaaa attatgatat aaatagaaaa gagcttatag caatatacaa 5520 aggattagaa cattatgcta tttttactac tcaaggtaaa aaattagtta gaacagataa 5580 tagtcaagct tattattgga taaaaaatag taaaataaaa aattctattg atatgaaaaa 5640 tgtaaaagga atactagcaa aaataataat gtatgatttc gatatagaaa ttattgatgg 5700 aaaaactaac atcgttgctg atttcttgtc cagaaatgga acagatgatg caacaattac 5760 tggctgaaat gcaaaaatta aatgcaacag ttgagaagca aaactcgagg attgaacaac 5820 tagagaacga attagaaaaa gaaaaaggta agaaacctct tactgaagaa aaaattatct 5880 ctgaaaaaga attagaaaaa gaaaaagaaa tatcttggaa ggcaaaaatt aaaaaatatg 5940 gtgaagcctc ctcaaaagaa gaaaaaatta ttgaaaaaga tgtgtggcaa aaacctaaag 6000 gcacacatat tggaagtatt tatgttacgg aattcgtccg acttatgaat tatttaaata 6060 gcagacatgc taacttaaat gaaatatata gtttaactga ctataataag ttagtagcag 6120 ataaaaatac tgatgaaaga cttatacgtg cagcatatca gcatggatta ttacatgtac 6180 attacataga atctgcgaat caaataaaaa tgtatgatga aggaatagtt aatgcatatt 6240 taaaattagc acaacttact aaagcaaaat gtatttatat tcgtttctat acggcctttg 6300 ccgaagtaac aaaagaagga attatcccaa aaatagaagc aataaagctc gggattactt 6360 atgaaaaaat tcagtatgat gtatgtgagc aagaattatt tgaagaaaat agagtgcatg 6420 atttccttag acataaaaaa gctattggat tacttactat tcgtagagaa ttagaatcaa 6480 ctgaaggaaa tatttgggta tatgaaaata ggaataatag aattatttat gcccctagta 6540 gagcaagaaa agaagaagtg aaaaaagtag tggccgcatg gcaacaaaaa atatatactc 6600 ctgaaagaaa tatcccagat tgtggaatta cagctccttg tatttcggag ccttgtttaa 6660 aaatattgtg tgaattaagt aaaaatcagt tagttgtaaa acatcaatgt aaatactgcg 6720 ggaagatgaa gaagaaggaa gaagtagact actcgctacc ggaggacata atcatgaaag 6780 atgtagatga agatagcgac gtagaagata agaaggaaga aaacgcgtat gacaaagacg 6840 catttagacc ggacaaagta gctgacgcag gcgatgacgt caaagagaaa taattaaccg 6900 gcaaaaacaa aagtggcgga ccccagcact gtttacttta cgactttcga ataaagttgg 6960 gacccagtca ctgttcatga atagtatcgg acaacgaccg aaagcgacga ggaatcttca 7020 ctgtttacca ctgtgcggat ttcaaatttc tttagttacg tccgaatagt agtttgttta 7080 gtttctatat aaacgtttca ttcgaacgat ttcagatatc gagaaatatc gaaaaatatc 7140 gaaatatatc gaaacatatc gaatcgttca actctctctc tcttgtaaac atttcttcga 7200 atatataaaa gttttatttt tctttcatcc tacgctcaat ctttcaagta agttttattg 7260 ctttatttac attatgtgtg agtagtccct caaaggactt ttcctaaagg gaaagatcta 7320 tatgaaccgc atgatgatat taagatgcat tcgtgtttat gagtagtact gatgaaatga 7380 gctgtgtata ggcttgtgag atagttgaaa atgctaaaag tacccgttgt aggccaggag 7440 agccgttgtt aggggaaaat ggcagaatta aactatggaa ttgccaacca ccaggacata 7500 tatcagttac ttataaaacg tgtatatcct atcatatggt catgtcgcaa aattatagtc 7560 ttttatgact atatagcatt tggttcatat acgattgagt atccttaagg aaaagtactt 7620 gtttttataa agctttcaca cccctgttaa tttatgcaat tttattttta atatttttcg 7680 ttccttacgc ttattttaat tccgcgcttt tattccccgt gtt 7723 //