ID HQ693430; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC HQ693430; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZA_Pie1_Ben3a-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2687 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 8ce5fdba2e57f4d42b9407e49f43bd03. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Pie1_Ben3a-2008" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="23.88 S 29.46 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="AEL32260.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G0YHY7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:G0YHY7" FT /protein_id="AEL32261.1" FT /translation="MSTSKRKRGDDSNWNKRTTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1560..2378) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:G0YHY5" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0YHY5" FT /protein_id="AEL32262.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSTHDLLCSESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEQENLLGPEA" XX SQ Sequence 2687 BP; 691 A; 653 C; 678 G; 665 T; 0 other; atggatccac agaacgccct gtactatcag ccgcgggtac ccacagcagc tccggcatcc 60 gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcactgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggaggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 300 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaactggaa 360 taagcggacc actaagaaga agccctcttc agcagggcta aagagggctg gaagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgct gggaccacca tgataacggt 480 cccctctgga ggagtatgtg acctcatcaa cacctacgcc cgaggatctg acgagggcaa 540 ccgccacacc agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga 600 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatattt gcctaccctg acacgcttaa 720 agcgtggccg gccacatgga aggtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg tcggattggc tcggatatcc ctccctcgaa 840 tgcaagttgg aagccctgca agcgcaacat ctacttccac aagttcacga gcgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 gttgtacatg gtcattgccc ccggcaatgg tcttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa actcccgttt tattatatct 1080 gatgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgaaaaaa cacacacaat 1140 caatacaggg gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacattgaa 1200 aaatcaagat ctatctgaat ccactgcctc cgtaggaggc agctcagggg gagaatacca 1260 cttctccccc ggcgacataa tgtaaatgac gcaatttgcc tcgaaatact ccagctgccc 1320 tggagtcatt tccttcatcc aatcttcatc cgagttggcg aggattattg taggcttaga 1380 cttcttctgc acctttttct tcttaccata cttggggttt acaatgaaat ccctctgaca 1440 gccaactaac tgtttccaac aaggacagaa tttaaacggg atatcatcta cgatgttgta 1500 gattgcgtct tcattgtatg aagaccaatc aacattattt tgccagtaat tatgaacccc 1560 taggcttctg gcccaagtag attttcctgt tcttgttggg ccgacgatgt agaggctctg 1620 ctttcttgat ctttcatctg atgactggat acagaatcca tccattggag gtcagaaatt 1680 gcatcctcga gggtataaca ggtaggttga aggagcatgt acgcttcggg actaacctgg 1740 aagatgttag gctggagcca atcattgatt gactcactac aaagtaaatc atgtgtggat 1800 tgcggatgag gattggtgaa ctcttcctga atctcaggaa aaagcttatt tgcagagtat 1860 tcaaaatact gcaattttgt ggaccaatca tagggaaact ctttctggat catggagagg 1920 tactcttcct tggaagtaga gtgtgaaata atgtctcgca ttatttcatc tttggaaggc 1980 tttttttcct taacttctga atcagatttt cctaggaagg gggacttcct aggaatgaaa 2040 gtacctctct caaacatagc cagaggttcc ttgagaatgt aatccctcac cctgtttacg 2100 gactttgcac tctgaatgtt tgggtgaaac ccattaatat caaagaacct tgagtccgat 2160 attcttaccg gcttctctgt ttgaagcaat gcatgtaaat gcaaacttcc atctttgtgt 2220 gcctctcggg cacagacaat atacttggga atccaacgaa caacgagctc ccagatcatc 2280 tgacaggcga tttcaggatt ttctggacac tttggatagg ttaagaacgt gttcacgttc 2340 ctgtgtgaga actgacggtt ggatgaggag gaggccatat ccgacgacgg aggatgaggc 2400 tgagggatgg cagatgggga gctctcaact ctataccaac cggtgcgcct tcgaaatccg 2460 ccgccccccc tcttatagtg gttatgaatg ggccggaccg ggccggccca gcaggaaaag 2520 aaggcgcgca ctaatattac cgcgccttct tttcctgcga gggcccggta gggcccgagc 2580 gatttgatgt aaagcttggt cctgctttgt atgatttatc taaagcagcc cattctaaag 2640 aaaccggtcc cgggcactat aaattgccta acaagtgcga ttcattc 2687 //