ID HQ693394; SV 1; circular; genomic DNA; STD; VRL; 2685 BP. XX AC HQ693394; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_RE_Pie2_Mic16-1995, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2685 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2685 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; eaf35cec4e9eb87daf5740f4de603f20. XX FH Key Location/Qualifiers FH FT source 1..2685 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_RE_Pie2_Mic16-1995" FT /mol_type="genomic DNA" FT /country="Reunion" FT /lat_lon="21.31 S 55.48 E" FT /collection_date="1995" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2E0Z5" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2E0Z5" FT /protein_id="AEL32152.1" FT /translation="MDPQNSLYVQPRVPTAAPTSAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNIPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G0YHM6" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:G0YHM6" FT /protein_id="AEL32153.1" FT /translation="MSTSKRKRGDDSNWNNRVSKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1558..2376) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:G0YHM7" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0YHM7" FT /protein_id="AEL32154.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSKFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEQESLLGPEA" XX SQ Sequence 2685 BP; 672 A; 628 C; 693 G; 692 T; 0 other; atggatccac agaactcctt gtatgtacag ccgcgggtac ccacagcagc tccgacctcc 60 gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcattgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcgc 180 caaggcagat ccacggagga gctgatattt ggtggacaag ctgtggatag gagcaaccct 240 atccctaata taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 300 ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggaa 360 taatcgggtt tctaagaaga agccttcttc agctgggctg aagagggctg gcagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgcc gggaccacca tgataacggt 480 cccctccgga ggcgtatgtg acctcatcaa cacctatgcc cgaggatctg acgagggcaa 540 ccgccacacc agcgagactc tgacgtacaa gattgccatc gactaccact tcgttgctga 600 cgcggcagcc tgccggtact ccaacaccgg aaccggtgtg atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca gactatattt gcctacccgg acaccctcaa 720 agcctggccg gcgacatgga aggtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgttggttg ttcaacatgg agaccgacgg gcggattggt tcggacattc ctccatcgaa 840 tgcaagttgg aagccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 tttgtacatg gtcattgccc ccggcaatgg ccttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa ctccgttttt attatatctc 1080 atgaatgctg aaagcttaca ttaatatgtc gtgcgatggc acgaaaaaca cacacaatca 1140 atacaggggg gtagtcggcg ggcggctaag ggtggtgctc ggcgggcaaa acatcgaaaa 1200 atcaagatgt atctgaatgt actgcctccg taggaggcag ctgaggggga gaataccatt 1260 tctcccctgg cgacataatg taaatggtgc agtttgcctc gaaatactcc agctgccctg 1320 gagtcatttc cttcatccaa tcttcatccg agttggcgag gattattgta ggcttagact 1380 tcttctgcac cttcttcttc ttaccatact tggggttgac aatgaaatct ttctggcagc 1440 caactaactg tttccaacaa ggacagaatt taaatggaat atcgtctacg atgttgtaga 1500 ttgcgtcttc gttgtatgaa gaccaatcaa cattattttg ccagtaatta tgaaccccta 1560 ggcttctggc ccaagtagac tttcctgttc ttgttggccc gacgatgtag aggctctgct 1620 ttcttgatcc ttcatctgat gactggatac agaatccatc cattggaggt cagagattgc 1680 atcctcgagg gtataacagg taggttgaag gagcatgtaa gcttcgggac tgacctggaa 1740 gatgttaggc tggagccaat cattgattga ctcattacag agtaaatcag gtgaggaggg 1800 tggatgagga ttggtgaact cttcctgaat ttcaggaaaa agtttatttg cagagtattc 1860 aaaatactgc aattttgtgg accaatcata gggaaactct ttctggatca tagagaggta 1920 ctcttccttg gaggtggagt gtgaaataat gtctcgcatt atttcatctt ttgaaggctt 1980 tttttccttt acttctgaat cagattttcc taggaagggg gacttcctag gaatgaaagt 2040 acctctctca aacatagcca gcggttcctt gagaatgtaa tctctcaccc tgttgactga 2100 tttggcactc tgaatatttg ggtggaaccc atttatatca aagaactttg agtcggatat 2160 ccttaccggc ttctctgtct gaagcaatgc atgtaaatgc aaacttccat ctttatgtgc 2220 ctctcgggca catagaatat acttgggtat ccaacgaaca acgagctccc aaatcatctg 2280 gcaggcgatt tccggatttt ctggacactt tggataggta aggaacgtgt tagcgttcct 2340 gtgtgagaac tgacggttgg atgaggagga ggccatatcc gacgacggag gacgaggctg 2400 agtgatggca gattgggagc tctcaactct ataccaaccg gtgcgccttc gaaatccgcc 2460 gctccttgtt ttatagtggt tgtaaatggg ccggaccggg ccggcccagc aggaaaagaa 2520 ggcgcgcact aatattaccg cgccttcttt tcctgcgagg tcccggtagg gaccgagcga 2580 tttgatttaa agcttggtcc tgctttgtat gatttatcta aagcagccta atctaaagaa 2640 tccggtcccg ggcactataa attgtctaac aagtgcgatt cactc 2685 //