ID HQ693290; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC HQ693290; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_CF_Bak_Car5-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2689 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; c9263bc57cbef6fd41403d83f25c6666. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_CF_Bak_Car5-2008" FT /mol_type="genomic DNA" FT /country="Central African Republic" FT /lat_lon="4.65 N 17.87 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="AEL31840.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:A5JLB9" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A5JLB9" FT /protein_id="AEL31841.1" FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1560..2378) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:G0YGR5" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0YGR5" FT /protein_id="AEL31842.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTTKEEYLSMIQKELPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDRLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA" XX SQ Sequence 2689 BP; 676 A; 638 C; 699 G; 676 T; 0 other; atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc tccggcatcc 60 gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagttttgt tgcactgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggaggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag ggcaatcccg ggccatttgt tccgggcacg 300 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggag 360 taagcgggtg cctaagaaga agccttcttc agctgggctg aagagggcgg gaagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgct gggaccacca tgataactgt 480 cccatccgga ggagtatgtg acctcatcaa cacctatgcc cgaggatctg acgagggcaa 540 ccgccacacc agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga 600 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatattt gcctaccctg acacgctgaa 720 agcgtggccg gccacatgga aggtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg gcggattggt tcggacattc ctccctcgaa 840 tgcaagttgg aagccttgca agcgcaacat ctacttccac aagttcacga gcgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 gttgtacatg gtcattgccc ccggcaatgg tcttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa actcccgttt tattatatct 1080 gatgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat 1140 caatacaggg gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa 1200 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg gagaatacca 1260 cttctccccc ggcgacataa tgtaaatgac gcagtttgcc tcgaaatact ccagctgccc 1320 tggagtcatt tccttcatcc aatcttcatc cgagttggcg aggattattg taggcttaga 1380 cttcttctgc accttcttct tcttaccata tttggggttt acaatgaaat ccctctgaca 1440 gccaactaac tgtttccaac aaggacagaa tttaaacggg atatcatcta cgatgttgta 1500 gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat tatgaacccc 1560 taggcttctg gcccaagtag attttcctgt tcttgttggg ccgacgatgt agaggctctg 1620 ctttcttgat ctttcatctg atgactggat acattatcca tccattggag gtcagaaatt 1680 gcatcctcga gggtataaca ggtgggttga aggagcatgt aagcttcggg actaacctgg 1740 aagatgttag gctggagccg atcattgatt gactcattac aaagtaaatc aggtgaggat 1800 tgcggatgag gattggtgaa ctcttcctga atctcaggaa aaagcttatt tgcagagtat 1860 tcaaaatact gcaattttgt ggaccaatca tagggaagct ctttctggat catggagagg 1920 tactcttcct tggtagtaga gtgtgaaata atgtctcgca ttatttcatc tttggaaggc 1980 tttttttcct ttacttctga atcagatttt cctaggaagg gggacttcct aggaatgaaa 2040 gtacctctct caaacatagc cagaggttcc ttgaggatgt aatccctcac cctgtttact 2100 gacttggcac tctgaatgtt tgggtgaaac ccattaatat caaagaacct tgagtccgat 2160 attcttaccg gcttctctgt ttgaagcaat gcatgtaaat gcaaacttcc atccttatgt 2220 gcctctcggg cacatagaat gtacttggga atccaacgaa caacgagctc ccagatcatc 2280 tggcaggcga tttcaggatt ttctggacac tttggatagg tgaggaacgt gttagcgttc 2340 cggtgtgaga actgacggtt ggatgaggag gaggccatag ccgacgacgg aggttgatgc 2400 tgagggatgg cagactggga gctccaaact ctatagcata cctgtgcgcc ttcgaaatcc 2460 gccgctctct tgtcttatag tggttgtgaa tgggccggac cgggccggcc cagcaggaaa 2520 agaaggcgcg cactaatatt accgcgcctt cttttcctgc gagggcccgg tagggcccga 2580 gcgatttgat gtaaagcctg gtcctgcttt gtatgattta tctaaagcag cccaatctaa 2640 agaaaccggt cccgggcact ataaattgcc taacaagtgc gattcattc 2689 //