ID   HQ611268; SV 1; linear; genomic RNA; STD; VRL; 2177 BP.
XX
AC   HQ611268;
XX
DT   26-JUN-2011 (Rel. 109, Created)
DT   17-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Cowpea chlorotic mottle virus isolate Car1 segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cowpea chlorotic mottle virus
OC   Viruses; Riboviria; Bromoviridae; Bromovirus.
XX
RN   [1]
RP   1-2177
RX   DOI; 10.1007/s11262-011-0613-9.
RX   PUBMED; 21537997.
RA   Ali A., Shafiekhani M., Olsen J.;
RT   "Molecular characterization of the complete genomes of two new field
RT   isolates of Cowpea chlorotic mottle virus, and their phylogenetic
RT   analysis";
RL   Virus Genes 43(1):120-129(2011).
XX
RN   [2]
RP   1-2177
RA   Ali A., Shafiekhani M., Olsen J.;
RT   ;
RL   Submitted (15-NOV-2010) to the INSDC.
RL   Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104,
RL   USA
XX
DR   MD5; 96f1e1fce0b643b824ca0bc32f977bc3.
DR   RFAM; RF01084; TLS-PK3.
XX
CC   GenBank Accession Numbers HQ611266-HQ611268 represent the complete
CC   genome of Cowpea chlorotic mottle virus isolate Car1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2177
FT                   /organism="Cowpea chlorotic mottle virus"
FT                   /segment="RNA3"
FT                   /host="cowpea"
FT                   /isolate="Car1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /proviral
FT                   /db_xref="taxon:12303"
FT   CDS             239..1147
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:F8S8Q0"
FT                   /protein_id="AEI54610.1"
FT                   /translation="MSNSTFRPFTGSSRTVVEGEQAGAQDDMSLLQSLFSDKSREEFAK
FT                   ECKLGMYTNLSSNNRLNYIDLVPKNTGSRALNLFKSEYEKGHIPSSGVLSIPRVLVFLV
FT                   RTTTVTESGSVTIRLVDLISASSVEILEPVDGTQEATIPISSLPAIVCFSPSYDCPMQM
FT                   IGNRHRCFGLVTQLDGVISSGSTVVMSHAYWSANFRSKPNNYKQYAPMYKYVEPFDRLK
FT                   RLSRKQLKNYVRGITNQSVNHGYLLGKPLLKTDEQDPEMIELEEESLTPTDSNGVGKEK
FT                   IAVTAKSVAGLPTASMSIKRR"
FT   CDS             1364..1936
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:F8S8Q1"
FT                   /db_xref="InterPro:IPR002009"
FT                   /db_xref="UniProtKB/TrEMBL:F8S8Q1"
FT                   /protein_id="AEI54611.1"
FT                   /translation="MSTVGTGKLTRAQRRAAARKNKRNTRVVQPVIVKPIASGQGKAIK
FT                   AWAGYSVSKWTASCAAAEAKVTSAITISLPNELSSERNKQLKVGRVLLWLGLLPSVSGT
FT                   VKSCVTETQTTAAASFQVALAVADNSKDVVAALYPEAFKGITLEQLAADLTIYLYSSAA
FT                   LTEGDVIVHLEVEHVRPTFDDSFTPVY"
XX
SQ   Sequence 2177 BP; 612 A; 454 C; 525 G; 586 T; 0 other;
     gtaatcttta ccaaacaact ttcaaacttt atagtttatg tagttgctgt gattcccgtg        60
     agcagcgttt agattactaa cttggacaca tcggtttttg aagcatcgga tagaggtgat       120
     taacgctaaa ccgtaccata gtaggctgtt acctggctcg aacccaggcg gacgtcagct       180
     gacattcacg gaatagttcg atatcataat tcctcgttct ttgctgtaat agctcccgat       240
     gtctaactct acttttagac cttttactgg ttcctccagg accgtggtcg agggagaaca       300
     agccggcgcc caggatgata tgtcgttgtt acagtcactt ttttccgaca aatccaggga       360
     ggagtttgct aaggagtgta agttgggtat gtataccaac ttatcctcca ataatcggct       420
     taattatata gatctagtcc ccaagaacac tggtagtaga gctctgaact tatttaagtc       480
     agagtatgaa aaaggtcata ttccctccag cggtgtgcta agtataccta gagtgctggt       540
     ttttcttgtg aggacgacaa cagtgactga atctgggagt gtcaccatta gattggttga       600
     cttgataagc gcttcgtcgg ttgagattct agaaccagtg gacggtacgc aagaagctac       660
     cattcctatt tctagtcttc cggctatcgt ttgtttttct cctagttatg actgtcccat       720
     gcagatgata gggaatagac acagatgttt cggtttggta actcaactgg atggtgtcat       780
     atcctcaggg tctaccgtcg ttatgagtca tgcgtattgg tctgcgaact ttcgtagtaa       840
     acctaataac tacaagcagt acgcgcctat gtataagtat gtggaaccct ttgacaggtt       900
     gaaacgtttg agtcgtaaac aattgaaaaa ttatgttagg ggcataacga atcaatctgt       960
     aaatcatggt tatctattgg gtaaaccact actgaagact gacgagcaag atccagagat      1020
     gattgagtta gaggaggaat cactaacccc taccgacagc aacggagtcg gcaaggaaaa      1080
     aatcgctgtg accgctaaat ccgttgcggg gcttccgacg gcctcgatgt ctatcaaacg      1140
     tagatagcta gatcagttgc taacagactt agtgtcatgg gagcaaaact catatgaggt      1200
     cattgaaaca tgaattggga agaaccagaa cccgccgaaa ggacaggctg agggcgtacg      1260
     attcatgcgt agttggctgg gtatgagaca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1320
     aaaaaaaaaa aaaaatctat gtttaatttg atagtaatat atcatgtcta cagtcggaac      1380
     agggaagtta actcgtgcac aacgaagggc tgcggcccgt aaaaacaagc ggaacactcg      1440
     tgtggtccaa cctgttattg taaaacccat cgcttcaggc caaggcaagg ctattaaagc      1500
     gtgggccggt tacagcgtat cgaagtggac cgcctcatgt gcggctgccg aagctaaagt      1560
     aacctcggct ataactattt ctcttcctaa cgagctatca tccgaaagga ataaacagct      1620
     caaagtgggg agagttttat tatggcttgg gttgcttccc agtgtcagtg gtacggtgaa      1680
     atcctgtgtc acagagacgc agactacagc tgctgcttcc tttcaggtgg cattagccgt      1740
     ggccgacaac tcgaaagatg ttgtcgctgc tttgtacccc gaggcgttta agggcataac      1800
     ccttgaacaa ctcgctgcgg atttaacgat ctacttgtac agcagtgcgg ctctcactga      1860
     gggcgacgtc atcgtgcatt tggaggttga gcacgtcaga cctacgtttg acgactcgtt      1920
     cactccggtg tattagtgcc cgctgaagag cgttacacta gtgtggccta cttgaaggct      1980
     agttataacc gtttctttaa acggtaatcg ttgttgaaac gtcttcctct tacaagagga      2040
     ttgagctgcc cttgagtttt actccttgaa ctcttcggaa gaattcttcg gaattcgtac      2100
     cagtacctca catagtgagg tgataagact ggtgggcagt gcctagtcga aagactaggt      2160
     gatctctaag gagacca                                                     2177
//