ID HQ593112; SV 1; circular; genomic DNA; STD; VRL; 7769 BP. XX AC HQ593112; XX DT 04-MAY-2011 (Rel. 108, Created) DT 04-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Banana streak IM virus, complete genome. XX KW . XX OS Banana streak IM virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7769 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT "Molecular characterisation of six badnavirus species associated with leaf RT streak disease of banana in East Africa"; RL Ann. Appl. Biol. 158(3):346-353(2011). XX RN [2] RP 1-7769 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT ; RL Submitted (07-NOV-2010) to the INSDC. RL Centre for Tropical Crops and Biocommodities, Queensland University of RL Technology, 2 George St, Brisbane, Queensland 4001, Australia XX DR MD5; 607e3894575fccd692eeaf63122bc467. XX FH Key Location/Qualifiers FH FT source 1..7769 FT /organism="Banana streak IM virus" FT /host="Musa sp. cv. Mshule" FT /mol_type="genomic DNA" FT /country="Kenya" FT /collection_date="Feb-2009" FT /db_xref="taxon:1016853" FT CDS 668..1198 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF I protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:F5AY31" FT /protein_id="AEC49888.1" FT /translation="MDSYWDQEFEKYKNSHAKSISDLAYLNLETADKVSNKDLAFNLHI FT NTYRSDLGFKVAIHSLSKNRELLVQNRKLLEKQELQLQEVHKLSKVIRSQRSDLKDILK FT RQDVLTKELQALREDYLRRKPLSKEDVEELVVRISEQPKFIEKQTEALTEELTKEVQAL FT KVIIHNFEQRLLG" FT CDS 1195..1587 FT /codon_start=1 FT /product="virion associated protein" FT /note="ORF II protein" FT /db_xref="UniProtKB/TrEMBL:E9NLM1" FT /protein_id="AEC49889.1" FT /translation="MSLAGSKATAIYQEALSSTSAGWEDSGVGFTDKGTISTATLSRQL FT NSLLFLVIKQNQLITTLSEELTQVHNKVKIIEGKGPSKLTPSSEIETINAKLKAIQEIQ FT KSQPKKETSSGSIKVFEDPYKILRRL" FT CDS 1590..7202 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes movement protein, coat protein, aspartic FT protease, reverse transcriptase and RNase H; ORF III" FT /db_xref="GOA:F5AY33" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F5AY33" FT /protein_id="AEC49890.1" FT /translation="MASRPRVLGSTTRTMVAEPGTPLVDDQIRDYRNAARAAYEAQRVA FT RQTGNIIGRIVGRQPREHTLAMIVDPNSELERSLAHRARTIPAEVLYMTQRGEPTNRVY FT RNRTEERMLVTQGQQDRSFILQESYEALLEAGFEYIHLGVLQVRIQIMHRSYAGTMALV FT VFRDTRWTQEDAEDRSIIAAMEADLSQGHQLIYVIPDIMMTIRDFYQHIQISILTKGYN FT GFQGESNLLVTRSCRCRLSNVPNVGFQYNIQNVVEFLKSKGVKALNATKISTKKFQGGE FT WNIKPSEVVVPMQPTRMITRVNYDSSRSIRFGDYEASTSSAPPTYSTNDDEDEVLGEIH FT QVNMITFLEDDDEFDYPQLAAFEQIFALESGVGEEDDTIIEFLDNLRLSDEEEEYNGDN FT ETETSTPRSKYNIFTFEDDYPQLQKLDNLVLSTNESAISSYNPGDIDMEGVGPGYAPAT FT GGTSYTGAGTSDFPYPRRPRKWENSSEWFNLPMANARQASVFIMPQDFDTKVFERWESS FT VLLHMTDKIFDDPQDKLTYIENLLGESEKKMFITWRMKFTTEYEEMRANALGSNGTQNI FT LNQIRMIFFLENPQVGTTNSQDAAYKTLKQLVCTEMSGPAIYRYLNDYFHLSAKSGRAW FT ASEELSKEFFTKLPKGLGDRVEKSFKEKYPNNTIGVAARITFTRAYMKEICQEAVFQNQ FT LKRLDFCKGTPVHGLYGKDKSYGRRYGVRKSTSYKGKPHKSHVRIDKKKHLTMKRKDCK FT CFACGDIGHFASECPNPKKLMHRVQILQSLELEDGIDVISVGFDESDVSDIYSVSEGED FT NYQFKHEDFGVVDHDVFMITIEERNYLVPTTSEWRAAMKVTKEEYLCLHQWEFSSERAG FT YCRACKHQALKDSRADCSTCKITICSLCKPHYYKDAAPIPVQKKVVKDDWMNMAKRFMD FT SWKKAEDEKMELKEELNDIKEQIKFYKGKEKEVCTEEIPQIYTQKLELLENENSLLKDL FT EEERKIQDIQVFKEIQAMRKEIESLKAAKEEENKAHEEEKKALKEEILALKRSITEIQK FT PVELVNNVEEHLVLTGKQRNNLLNIKITIEIKEKKITMNAILDTGAAICVCDGQIVDNY FT FRRPSMMNAFIKGVNGITNVQEILEEGRIWIGNQWFRIPRTYVMPQLSEGLHFIIGMNF FT IRAMEGGIRIEQGIVTFYKMITQAQAPPITHDISYIEELELELPLYYDICAANPIGGMF FT NNDLISPVEIQKLKDLGYIGEEPLKHWAKNQVRCRIEVKNPDLIIEDRPLKHVTPAMKE FT SMKRHVDKLLELKVIRPSESKHRTTAIIVQSGTEIDPLTGKEKRGKERLVFNYKRLNDN FT TEKDQYSLPGINTIISRIGNSKIYSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLV FT MPFGLKNAPAIFQRKMDNCFRGTEEFIAVYIDDILIFSDNISDHRKHLKKFLEICKANG FT LVLSPTKMKIGTPEIDFLGATIGNSKIKLQPHIIKKVIETRDEELKEVKGLRKWLGVLN FT YARAYIPNLGKTLGPLYSKTSGNGERRMNSQDWKIVQNIKTQVQRLPDLEIPPTSAIII FT LETDGCMEGWGGICKWKAKPSDTRLNEKICAYASGSYNPIKSTIDAEVHAVINSLEKFK FT IYYLDKKELIIRTDSQAIVAFYKKQADHKPSRTRWLMLIDYITGLGINVKFEHIDGKEN FT VLADTLSRLVQVLVTKIHHPAEEQLVDAVLEVLKNPKEVAIKKVNHFILLTERWIAGFK FT DEHPVNVLTLDEETRLRCSCQDPITKQGMFAALLQSHTATNPGRWFYKCERNRCHLWIW FT KDLLDQYANEYYINMGLNSLLLNMDWPDEESDPPDSPSPARTEDIFDLANVSNDD" XX SQ Sequence 7769 BP; 2646 A; 1614 C; 1690 G; 1819 T; 0 other; tggtatcaga gctaagtttt ctgtaagttt ttatggcttt tatggggtaa ttcccttaga 60 taggagccta agggctctgc tatgcttcat ttttagaaaa tagctgtgta agtagacttg 120 cataatgatt ccagaaagac taagaagagt attctatgtt atgatactac ttgtgaaagg 180 aaaaaggatt tcttgcgttt ccaagtctta ctgaaataat gtccatctga gaaatgccta 240 atatatagtg aaagggagaa aaatgacttg agttgggagt attagtttat cggacttgga 300 gcaaaagaac cagaacctta cctggcatgt aagacccaag gggcagaagc tggagaaccc 360 tggtgtgagt ttcttattcg gtattattaa aactctagta tcctcaaaac ttcgtgaagt 420 attccttgaa actataatat tagcaatttg atggtgttca ctagatcaca aaaaaatttg 480 agttgtgcaa gaatgaaaga ttccgatcac atgatagttg actaaactag aagacccttt 540 taagtctgaa agaaaaacag atgcatgagc tacctctaga actggctaca atctattatg 600 agcatggcat cccaaaggac tactcctatc tgtctcaaga atttggttta aaaaaccttt 660 gttaactctg gattcctatt gggatcagga atttgaaaaa tataaaaatt cacacgcgaa 720 gtccatatca gatcttgctt atcttaattt agaaactgct gacaaggtct ctaataaaga 780 ccttgctttt aatctacata tcaacactta ccgcagtgac ctcggtttca aagttgctat 840 acattcttta tccaaaaatc gtgaactact agtccagaac aggaagcttc tggaaaaaca 900 agagcttcaa cttcaagaag ttcacaagct ctccaaagtt atacgttcac aacgctcgga 960 tcttaaagac atccttaaaa ggcaggacgt tcttacgaag gagcttcagg ctcttcgtga 1020 ggattattta aggagaaaac ctctcagcaa ggaggacgtt gaggaactgg ttgttcgcat 1080 ctcagaacag ccaaagttta ttgaaaaaca aacagaggcc ctcactgagg aacttacaaa 1140 agaggtgcaa gctcttaagg ttatcattca taacttcgag caaaggctct tgggatgagc 1200 cttgcaggca gcaaggcaac tgctatttac caagaagcac tatcctccac ctcagcaggc 1260 tgggaagact cgggtgtcgg tttcactgat aaaggcacca taagcactgc aacgttatcc 1320 aggcagctaa attctctact attcctagtg atcaagcaga atcagctcat cactacgtta 1380 tctgaggagc tgacccaagt ccacaacaag gtcaagataa ttgaaggcaa aggaccatca 1440 aaactcacgc cttcaagtga aattgaaact atcaacgcca agctcaaagc catccaagaa 1500 attcagaaga gtcagcccaa aaaggagact tcttcaggat ccatcaaagt ctttgaggac 1560 ccgtataaaa tccttagaag attgtaaaaa tggcgtcaag accaagagtt ctgggctcca 1620 caaccagaac tatggttgca gaaccaggga cccccctggt tgatgatcag atccgggatt 1680 accggaatgc tgcaagagcc gcctatgaag ctcagagggt tgccagacaa actggcaaca 1740 tcatcggaag aattgttgga cgacaaccaa gggagcatac ccttgcaatg atcgtagatc 1800 ccaacagtga gctggagcgc tcactggctc atcgggcaag aaccataccg gctgaagtcc 1860 tttacatgac ccagcgcggt gagccaacaa accgggtcta cagaaatcgt acggaagaaa 1920 gaatgttagt cacacaagga cagcaagaca ggtcctttat tcttcaagaa tcctatgagg 1980 cgttactgga agcaggattt gagtacatcc accttggagt actacaagtc cgtatccaaa 2040 tcatgcacag atcctacgca ggaacaatgg ccctggtagt cttcagggat accaggtgga 2100 cgcaagaaga tgctgaagat agatccatta ttgccgccat ggaagctgat ctttctcaag 2160 gacatcagct tatatatgta atcccagaca tcatgatgac catccgggat ttctatcagc 2220 atatacaaat aagcatctta accaagggat acaatgggtt ccaaggagag tccaacctct 2280 tggtaaccag aagctgtcgc tgcagattaa gcaacgttcc taacgttggc ttccagtaca 2340 acatccaaaa tgtggtagaa ttcctaaaat caaagggtgt aaaagccctc aatgccacaa 2400 aaatcagcac caaaaaattc cagggaggcg aatggaacat caagccttca gaggtggttg 2460 tacctatgca accaacaagg atgatcacaa gagtcaacta tgactcctcc agaagcatcc 2520 gctttggaga ctatgaggca agcacatcat cagccccacc gacatactcc accaatgatg 2580 atgaagatga agtacttgga gaaattcacc aagtaaatat gattacattc ctcgaagatg 2640 atgatgaatt cgattatcct cagttagcag cttttgagca aatatttgct ctagaaagcg 2700 gggtgggaga ggaagacgac acaatcatcg aattcttaga caacttgaga ctctctgatg 2760 aggaagaaga gtacaatggg gacaatgaga ccgaaaccag taccccaaga agtaagtaca 2820 acattttcac cttcgaagac gactatcctc aactccagaa acttgataat cttgttctct 2880 ccaccaatga gtctgcaatc agcagctaca accctggaga tattgatatg gagggagtag 2940 gtccaggata tgcacctgcg acaggaggaa ccagctatac tggagctggg acatctgatt 3000 tcccataccc aagaagacca aggaaatggg aaaatagttc ggaatggttc aatttaccta 3060 tggctaatgc aagacaagcc tccgtattta tcatgccaca agactttgac accaaagtat 3120 tcgagcgatg ggaaagttct gtcctcctac atatgacaga caaaatcttc gatgatcccc 3180 aagacaagct tacatacatt gagaatttac taggggaatc ggaaaaaaag atgttcatca 3240 cttggaggat gaagttcact actgaatatg aagaaatgcg tgcaaacgca ttaggctcca 3300 acggaacgca aaatatcctg aaccagatca ggatgatatt ctttttggaa aatcctcaag 3360 tcggcaccac taatagccag gatgccgcgt acaagacatt aaagcagctg gtatgtacag 3420 aaatgtcggg accagcaata tacagatacc tcaatgacta cttccatcta tcagcaaaat 3480 ccggaagagc ttgggcaagt gaagaactct caaaagaatt ctttacgaaa ctcccaaagg 3540 gattgggaga cagagttgag aaaagcttta aagaaaaata cccaaacaat acaattgggg 3600 tagcagcaag aatcactttt accagagcct atatgaaaga gatatgccaa gaagcagtgt 3660 tccagaacca actcaagaga ttggatttct gcaagggaac accagtccat gggctatacg 3720 gcaaggataa atcctatgga agaagatatg gggtacgaaa gagcacctcg tacaaaggaa 3780 aaccccataa gtcacatgtg agaatcgaca aaaagaagca tctcacaatg aagaggaagg 3840 actgcaagtg ctttgcttgc ggtgatatcg gtcatttcgc atcagaatgc ccgaatccca 3900 agaagctgat gcacagagtt cagatcctac aatcacttga gctagaggac ggtattgatg 3960 tcatctcagt agggtttgat gaatctgacg tctcagacat atattcagta tctgaagggg 4020 aagataacta ccagttcaaa catgaagatt tcggagtagt tgaccatgac gtctttatga 4080 taactattga ggaaagaaac tacctagtcc ctacaacatc agaatggcgt gcagccatga 4140 aagtcacgaa ggaagaatat ctatgcctac accaatggga atttagctca gaaagggcag 4200 gatactgtag agcctgcaag caccaggcct tgaaagatag tagggcagat tgttcaacct 4260 gcaagattac tatctgctca ttgtgcaagc cccactatta caaagatgca gcgcctattc 4320 cagtccaaaa gaaggtcgta aaagatgatt ggatgaacat ggcaaagaga ttcatggaca 4380 gctggaaaaa ggctgaagat gaaaaaatgg aactgaagga agaactcaat gacatcaagg 4440 agcaaatcaa gttctacaaa ggcaaagaaa aagaggtatg cactgaagaa atccctcaga 4500 tttatactca aaaattagaa ctccttgaga atgaaaatag cttgctcaaa gacctggagg 4560 aagaaagaaa aatacaggac atacaggttt tcaaagagat ccaagctatg aggaaagaga 4620 ttgagagcct taaggcagca aaggaagaag aaaataaggc tcatgaggag gaaaagaagg 4680 ctcttaagga agagatttta gccttaaaga gaagcatcac tgaaattcag aagccagtgg 4740 aactagtgaa caacgtggag gaacatctgg ttctgacagg aaagcaaaga aataatctcc 4800 tcaacatcaa aattacaata gagataaaag aaaagaagat caccatgaat gcgatcttag 4860 acacaggagc tgccatatgt gtctgtgatg gtcagatagt tgacaactac ttcaggagac 4920 catcaatgat gaacgccttc ataaagggag taaatgggat cacaaacgta caagaaatcc 4980 tagaggaagg aagaatctgg attggcaatc aatggttcag gatccccaga acatacgtta 5040 tgccacaact ctctgaagga cttcacttta tcatagggat gaactttatt cgtgcaatgg 5100 aaggaggaat tcgtattgaa caagggatag taaccttcta caaaatgatt actcaagctc 5160 aggcaccccc tatcactcat gacatctctt acattgaaga attggaatta gagctgccac 5220 tctactatga catctgtgca gccaacccca taggagggat gtttaacaat gacttgatat 5280 caccagttga gatccagaag ctcaaagacc tcggatatat cggggaagaa cccctgaagc 5340 attgggctaa aaatcaagtc agatgcagaa tagaggtcaa aaaccctgac ctcatcatcg 5400 aggacagacc tctgaaacat gtcacccctg ctatgaagga atcaatgaag aggcacgtgg 5460 acaaactact cgagctgaaa gtgattcgac cctcagaaag taaacataga accactgcaa 5520 tcattgttca gtcgggaacg gagatagacc ctcttacagg aaaagagaaa agagggaagg 5580 agaggctggt attcaactac aagcgcctca atgataacac ggagaaagac caatactcat 5640 taccaggtat caacaccatc attagtagga ttggcaattc caaaatctat agcaaatttg 5700 atcttaaatc aggatttcac caagtcgcca tggaccctga aagtatacct tggacggcgt 5760 tctgggctat agacggactg tacgagtggc ttgttatgcc atttggttta aagaatgcac 5820 ctgccatctt ccagagaaag atggataatt gcttcagagg aaccgaggaa ttcattgcag 5880 tctacataga cgatatactc attttttctg ataacatttc tgatcatagg aagcatctta 5940 agaagttcct ggaaatttgc aaagcaaatg ggcttgttct cagcccaaca aaaatgaaga 6000 ttggcacacc ggaaattgac ttccttggag caaccattgg taactccaaa atcaaattac 6060 agccccacat catcaagaag gtcattgaaa caagggatga ggagctgaaa gaagttaaag 6120 gattaaggaa atggttggga gtccttaatt atgccagggc atacatccct aacctcggga 6180 aaacattggg accgctctat tcaaaaactt ctggcaacgg agagagaaga atgaatagtc 6240 aagattggaa gattgtacaa aacatcaaaa ctcaggtaca aagacttccc gatctagaaa 6300 tccctcccac tagtgcaata attatacttg aaacagacgg ttgcatggaa gggtggggag 6360 gaatttgcaa atggaaggca aagccatcag atacaaggct gaatgaaaaa atctgtgcct 6420 acgccagcgg cagttacaat ccgatcaaga gtacaattga cgctgaagtc cacgccgtaa 6480 taaacagctt agaaaaattc aaaatatact acctggataa gaaagagctg atcatcagaa 6540 cggatagcca ggctattgtg gcattctaca agaagcaagc tgatcacaaa ccatcgagga 6600 caaggtggtt aatgcttata gattacatca caggccttgg tatcaacgta aagtttgagc 6660 acattgatgg aaaggaaaat gtgcttgctg acacattgtc aagattggta caagtattag 6720 ttaccaaaat tcaccatcca gctgaggaac aattggtgga tgcagttctc gaagtcctca 6780 aaaatccaaa ggaagtggcc atcaagaagg taaaccattt tatcttacta actgaaagat 6840 ggattgcagg attcaaggac gaacatcctg tgaacgttct gactcttgac gaagaaacaa 6900 ggctacgatg ctcatgccaa gatcccatca caaaacaagg gatgtttgct gcccttctgc 6960 aaagtcacac tgctacaaat ccaggacgat ggttctacaa atgtgagcga aacagatgtc 7020 acctctggat atggaaagac ctcttggacc agtatgccaa cgaatactac atcaacatgg 7080 gcctcaactc tttactgctc aacatggatt ggccagacga agagtcagat ccaccggatt 7140 ctccaagccc agctagaacc gaagatattt ttgacctggc aaacgtaagc aatgacgact 7200 aaaacaagat tcggttcgga aatggtgacc cataatggta caaatctagg tgcaaatcag 7260 agtcatgcac atagctttat ttcctttaaa aatggattga gccccgggga gccgtccgat 7320 tgtttgataa aaatgtctgg gtgcaatgct ttgtcatgca catgactact taaaggttgt 7380 cggtcagtgc ctgcgtgcat ctcaagcaac cagtacgcta ggaagaaaag tctgggtgca 7440 atgcgctgtc atgcacatga ctactttagc tttattaaag tttgtcggtt gcattattgg 7500 tgcctgcgtg catcactact ctagctttat taaagtttgt cggttgcatt attggtgcct 7560 gcgtgcatcc gaagcaacct ttgcctttct ctatctataa gagaaggcct tgtaactcag 7620 ttgcaagcat gcaattccca cgcaagctta cttctgaatt ctccagaaat caaagtcaat 7680 aaaatccttt tcttacagat gttcttgaaa tctctatgag caatcattag acgagtaaag 7740 aacaagatcc gcaaagcccc ccccctata 7769 //