ID   HQ455365; SV 1; circular; genomic DNA; STD; VRL; 2738 BP.
XX
AC   HQ455365;
XX
DT   31-MAY-2011 (Rel. 109, Created)
DT   31-MAY-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cotton leaf curl Multan virus isolate ZhH segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Cotton leaf curl Multan virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2738
RA   Feng L., He Z., Li H.;
RT   ;
RL   Submitted (01-NOV-2010) to the INSDC.
RL   Plant Quarantine Lab, Guangdong Inspection and Quarantine Technology
RL   Center, Huachengdadao No. 66, Guangzhou, Guangdong 510623, China
XX
DR   MD5; d0f42b9d33458b6d31fb5421f3855026.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2738
FT                   /organism="Cotton leaf curl Multan virus"
FT                   /segment="DNA-A"
FT                   /host="Hibiscus rosa-sinensis (Rose Mallow)"
FT                   /isolate="ZhH"
FT                   /mol_type="genomic DNA"
FT                   /country="China"
FT                   /collection_date="Mar-2009"
FT                   /db_xref="taxon:223252"
FT   gene            116..481
FT                   /gene="V2"
FT   CDS             116..481
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="precoat protein"
FT                   /db_xref="GOA:F6KNS3"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:F6KNS3"
FT                   /protein_id="AEG42058.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL
FT                   ICILRSRNYVEASCRYRHFNARVEGTSASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT                   EAQNISDVQKSGCSKGL"
FT   gene            556..1047
FT                   /gene="V1"
FT   misc_feature    556..1047
FT                   /gene="V1"
FT                   /note="similar to coat protein"
FT   gene            complement(1050..1454)
FT                   /gene="C3"
FT   CDS             complement(1050..1454)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:A5HBY1"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:A5HBY1"
FT                   /protein_id="AEG42059.1"
FT                   /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHFNRPFTTNMDI
FT                   LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL
FT                   VIKAVEHVLYNVIQQTMYVDQYSEIEFKLY"
FT   gene            complement(1147..1599)
FT                   /gene="C2"
FT   CDS             complement(1147..1599)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:F6KNS5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:F6KNS5"
FT                   /protein_id="AEG42060.1"
FT                   /translation="MRSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT                   CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDNQPLQPSIHDEYGHTHDPNPVQLQH
FT                   SESSGTAQVLSNLPNLDDLTPSDWSFLKGIQNPSPQISEQSRCNFN"
FT   gene            complement(1496..2587)
FT                   /gene="C1"
FT   CDS             complement(1496..2587)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="Rep protein"
FT                   /db_xref="GOA:F6KNV6"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:F6KNV6"
FT                   /protein_id="AEG42061.1"
FT                   /translation="MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIK
FT                   VCRELHEDGSPHLHVLIQFEGKLICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYI
FT                   DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH
FT                   NLNANLDRIFQEPPAPYGSPFSFSSFDQVPEELQVWALDNVVDAAARPLRPRSIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL
FT                   YSASNQSTAQGSEETQQEEESRS"
FT   gene            complement(2128..2738)
FT                   /gene="C4"
FT   misc_feature    complement(2128..2738)
FT                   /gene="C4"
FT                   /note="similar to transcriptional regulator protein"
XX
SQ   Sequence 2738 BP; 702 A; 546 C; 647 G; 843 T; 0 other;
     accggatggc cgcgcgattt ttttgtgggc cccctattta tgagattgct ccctcaaagc        60
     taaataacgc tcccgcccac tataagtact tgcgcactaa gtttcaaatt caaacatgtg       120
     ggatccattg ttaaacgaat ttcctgatac ggtgcacggg tttcggtgta tgctttctgt       180
     caaatatttg caacttttgt cgcaggatta ttcaccggat accctaggtt acgatttaat       240
     acgggattta atctgtattc tacgttcccg taattatgtc gaagcgagct gcagatatcg       300
     tcatttcaac gcccgcgtcg aaggtacgtc ggcgtctgaa cttcggcagc ccatacacca       360
     accgtgttgc tgtccccatt gtccgcgtca caaaacaaca ggcatggaca aacaggccta       420
     tgaacaggaa gcccagaata tatcggatgt acagaagtcc ggatgttcca aagggttgtg       480
     aaggcccatg taaggtacag tcttttgagt ccagacatga tgttgttcat attggtaagg       540
     taatgtgtat ttctgatgtt actcgtggtg tcggttttga cccatcgtat tggtaaacgt       600
     ttttgtgtca agtcagttta tgttttaggt aagatatgga tggatgaaaa tataaagacc       660
     aggaatcaca cgaattcggt catgttcttt ttagttcgcg atcgacgacc tgttgacaaa       720
     ccgcaggatt ttggtgaggt attcaatatg tttgataacg aacccagtac agcaactgtg       780
     aagaatagtc atagggaccg ttatcaggtg ttgaggaaat ggcatgcaac cgttacgggt       840
     ggtcaatatg cgagtaagga acaggctttg gtcaagaagt ttgtcagagt taacaattat       900
     gttgtttaca atcaacagga agcaggaaaa tacgagaatc atacggaaaa tgcgttaatg       960
     ctttatatgg cttgtaccca cgctagcaac cctgtttatg ctacgttgaa gattaggata      1020
     tatttttatg actctgtaac gaattgatgt taataaagtt tgaattctat ttctgaatat      1080
     tgatctacat acatagtttg ttggattaca ttgtacaata catgttctac agctttaata      1140
     actaaattaa ttgaaattac accgagattg ttcagatatt tgaggacttg ggttttgaat      1200
     acccttaaga aaagaccagt ctgagggtgt aaggtcgtcc agattcggaa ggttagaaag      1260
     cacttgtgca gtcccagagc tttccgagtg ttgtagttga actggattcg gatcgtgagt      1320
     atgtccatat tcgtcgtgaa tggacggttg aagtggctga ttatcttgaa ataaagggga      1380
     tttggaacct cccagatata tgcgccattc cctgcttgag ctgcagtgat gggttcccct      1440
     gtgcgtgaat ccatggttgt ggcagttgat tgacagataa taagaacacc cgcattcaag      1500
     atctactctc ctcctcctgt tgcgtctctt cgcttccctg tgctgtactt tgattggaag      1560
     ctgagtacag tggtccttcg agagtgatga agatcgcatt ttttagggcc caattcttta      1620
     atgctgtgtt tttttcctcg ttgaggaatt ccttataact gctgttggga ccaggattgc      1680
     acaagaagat tgtcggtatt ccgcctttaa tttgaactgg cttaccgtat tttgtgttgg      1740
     actgccagtc tctttgggcc cccatgaact ctttaaagtg tttgaggaaa tgcgggtcga      1800
     cgtcatcaat gacgttgtac caggcgtcgt tactgtatac tttgggactc aggtccagat      1860
     gtccgcacaa atagttatgt ggtcccaatg acctagccca catcgtcttt cccgtacggc      1920
     tatctccctc aattactata ctccgaggtc taaggggccg cgcagcggca tcgacaacgt      1980
     tatccaacgc ccaaacttga agttcttctg gaacttgatc gaacgaagaa aaagaaaaag      2040
     gagaaccata aggagctggt ggctcctgaa agatcctgtc tagatttgca tttaaattat      2100
     gaaattgtag tacaaaatct ttaggagcta gttccttaat gactctaaga gcctctgact      2160
     tacttcccgc gttaagcgct gcggcgtaag cgtcgttggc tgtctgttgt cctcctcttg      2220
     ctgatcttcc atcgatctga aactctcccc actcgagagt gtccccgtcc ttgtcgatgt      2280
     agtccttgac atctgagctt gatttagctc cctgaatgtt cggatggaaa tgtgctgacc      2340
     tggttgggga taccaggtcg aagaatctgt tattcgtgca gatgagtttg ccctcgaact      2400
     ggatgagcac atggagatga gggctcccat cttcgtgtaa ctctctgcag actttgatgt      2460
     attttttatt cgagggtgtg ttgatggctt gaatttggga aagtgcttcc tctttagtga      2520
     gtgagcactg tggataagtg aggaaataat ttttggcttg tattttaaaa cgtttggggg      2580
     gagccattga ctttggtcaa ttggagacaa ctgattggat tttactctgg caattggaga      2640
     ctggagacaa tttatagtgt ctccaaatgg cattatcgta atttgagaaa tcatttcaaa      2700
     atcctcacgc tccaaaaagc ggccatccgt ataatatt                              2738
//