ID   HQ406934; SV 1; linear; genomic RNA; STD; VRL; 777 BP.
XX
AC   HQ406934;
XX
DT   19-APR-2011 (Rel. 108, Created)
DT   05-AUG-2023 (Rel. 144, Last updated, Version 3)
XX
DE   Tomato spotted wilt virus isolate McC-SumR nucleocapsid protein (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Orthotospovirus tomatomaculae
OC   Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC   Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus.
XX
RN   [1]
RP   1-777
RX   PUBMED; 24025049.
RA   Sundaraj S., Srinivasan R., Culbreath A.K., Riley D.G., Pappu H.R.;
RT   "Host plant resistance against tomato spotted wilt virus in peanut (Arachis
RT   hypogaea) and its impact on susceptibility to the virus, virus population
RT   genetics, and vector feeding behavior and survival";
RL   Phytopathology 104(2):202-210(2014).
XX
RN   [2]
RP   1-777
RA   Sundaraj S., Srinivasan R., Culbreath A.K., Beasley J.P., Pappu H.R.;
RT   "Variation in Tomato spotted wilt virus (TSWV) isolates from resistant and
RT   susceptible peanut cultivars in Georgia";
RL   Unpublished.
XX
RN   [3]
RP   1-777
RA   Sundaraj S., Srinivasan R., Culbreath A.K., Beasley J.P., Pappu H.R.;
RT   ;
RL   Submitted (15-OCT-2010) to the INSDC.
RL   Department of Entomology, University of Georgia, 122 S. Entomology Drive,
RL   Tifton, GA 31793, USA
XX
DR   MD5; aec7ff03ddad3935d7962716dd5f9a7b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..777
FT                   /organism="Orthotospovirus tomatomaculae"
FT                   /host="Arachis hypogaea cultivar McCloud"
FT                   /isolate="McC-SumR"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="22-Jul-2010"
FT                   /proviral
FT                   /PCR_primers="fwd_name: CN223, fwd_seq:atgtctaaggttaagctc,
FT                   rev_name: CN224, rev_seq:ttaagcaagttctgtgag"
FT                   /db_xref="taxon:3052585"
FT   gene            1..777
FT                   /gene="N"
FT   CDS             1..777
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:F5A5R0"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:F5A5R0"
FT                   /protein_id="AEB54739.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMTEDQVKKGKEYAAILSSC
FT                   NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLTELA"
XX
SQ   Sequence 777 BP; 253 A; 135 C; 174 G; 215 T; 0 other;
     atgtctaagg ttaagctcac taaggaaagc attgtcgctt tgttgacaca aggcaaagac        60
     cttgagtttg aggaagatca gaatctggta gcattcaact tcaagacttt ttgtctggaa       120
     aaccttgacc agatcaaaaa gatgagcatt atttcatgtc tgacattcct gaagaaccgt       180
     cagagcataa tgaaggttat caagcaaagt gattttactt ttggtaaaat taccataaag       240
     aaaacttcag acaggattgg agccactgac atgaccttca gaaggcttga tagcttgatt       300
     agggtcaggc ttgttgagga aactgggaat tctgagaatc tcaatactat caaatctaag       360
     attgcttccc accctttgat tcaagcctat ggattacctc ttgatgatgc aaagtctgtg       420
     aggcttgcca taatgctagg aggtagctta cctcttattg cttcagttga tagctttgag       480
     atgatcagtg ttgtcttggc tatatatcag gatgcaaaat acaaggacct cgggattgac       540
     ccaaagaagt atgacaccag ggaagcctta gggaaagttt gcactgtgct gaaaagcaaa       600
     gcatttgaaa tgactgaaga tcaggtgaag aaggggaaag agtatgctgc tatactcagt       660
     tcctgcaatc ctaatgctaa aggaagtgtt gctatggaac attacagtga aactcttaac       720
     aagttctatg aaatgtttgg agttaaaaaa caggcaaaac tcacagaact tgcttaa          777
//