ID HQ343288; SV 1; linear; genomic RNA; STD; VRL; 2484 BP. XX AC HQ343288; XX DT 02-OCT-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate BA-JB16 segment RNA3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2484 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT "Development of a RT-PCR restriction analysis-based method for detecting RT natural genetic reassortment of Rice stripe virus RNA segments"; RL Unpublished. XX RN [2] RP 1-2484 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT ; RL Submitted (04-OCT-2010) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 10c66479533b351d6944593410408995. XX FH Key Location/Qualifiers FH FT source 1..2484 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA3" FT /host="Oryza sativa japonica" FT /isolate="BA-JB16" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052763" FT gene 66..701 FT /gene="NS3" FT CDS 66..701 FT /codon_start=1 FT /gene="NS3" FT /product="NS3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:G4WH16" FT /protein_id="ADY76584.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAITLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSTLEPSPGSSPAVL" FT gene complement(1424..2392) FT /gene="N" FT CDS complement(1424..2392) FT /codon_start=1 FT /gene="N" FT /product="N" FT /db_xref="GOA:Q8JRD1" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:Q8JRD1" FT /protein_id="ADY76585.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2484 BP; 766 A; 529 C; 428 G; 760 T; 1 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtgg gctctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctatcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttaccctt taccgttcct agtgtcaagg 480 gatttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat gggaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaagg cataagtatg 600 tcatttcttc cgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagta 660 cactagaacc ctcaccaggc agctctccag ctgtgctgta gaaataaaaa gaaaaaagaa 720 aaaagaaaaa aataaaacaa atgatcaaaa aaacacaaaa aaatcttaaa aatgaaaaac 780 acacaaaaaa accaaaaaaa ctaaaaagac taaaaaacat catgacctaa gaaactgcac 840 accactggtt gtctagtggg ctctagttgg tagagaaagc tatgcttttg cctaaagcca 900 tgattgggcc aatccttaaa atgtgctaag cacattatcc gaagatgtct cggatgtttt 960 tttacctaac ctaatttttt tgtattttta tataattttt tgattttttt gtattttata 1020 tacatatttt tgttttttga tttttttgtt ttttaatatt ttttcttcta attactacat 1080 taatatattt gattattcat atacttaaaa tatatagtat gtawtataaa aatagagcaa 1140 tataataaag ctagtataac tacattacaa acatatatct aaatatttag atagacttat 1200 caaactaaag actctactag agagtgagta ataataatgg caatacatca cacacaaagc 1260 ccaaaaccac acagacaaaa taacttatgg aatataatta aaaactaaaa tatacacata 1320 taaatataca tattaactta cacctaaaga agcaacacac tgtttgaaga catgcatctt 1380 ccatggagat atgagatccc ccacaactac tgacttgttc agtctagtca tctgcacctt 1440 ctgcctcgtc ctcgaagaac tccttcacca acccgctgac ttcagatgct gtctttgaag 1500 tgttctcagc aaggatcttc atcagtttgc tctgttgagc caagtacagc cttgtctgat 1560 tcccataagt gctgatcgta ttgacagaca taccagccag cgcatcgaag attgtggtct 1620 tcactttccc attggtgatg aattcatcta agaccttctt tctgccatct tccttcttct 1680 tgtcagccag gttctttgac ttgcatgtga tgaccaggag accagttgtg tacttcatca 1740 tgtctatgtc ttttgtcaga ccacgctcct tcttcttacc ctctggcatg gtctttttgg 1800 ttatttggaa ggagtgaatg atgtgcacaa caaacaaaat gtgacttagg gagtgagttg 1860 tgcagtaagg agctgtttca ctctccagtt taatatattg tggaacatag tcccacagta 1920 agttatcaca tcctgttagt cccaggtcag aggagtccac agccatctta acaccagaaa 1980 tttgtctcac aacttcatgt gagacatttg ggaatagctg agccagcctt ccaagtgtga 2040 tagcattggc atttgtcccc accgaggaca ctatcccata cctcgacacc aaggtcgaag 2100 cctctgtgct tccagccgcc actttcactt tcttagtgac atctctcaca aagccagtgc 2160 ctctcacata tctcatggtg atgcacatag tcatatcctt ggccagtgtg tcaccacctt 2220 tgtccttcaa tatgccaatc agagttgcag catcatagcc tgcatactct atctgaccag 2280 caaaggtcac aacatcagct ttatgagcag tcaggtaaga caacgcatct ttggagatgt 2340 cattgattgc cttctgcaaa tcagctagag tggctggctt gttggtgccc attgtagcaa 2400 gaggtactgg aggaatggtt gcggcttaga tgaaatttgg aatgtaaaag caaaatcgaa 2460 aattttatta cccagacttt gtgt 2484 //