ID HQ316635; SV 1; linear; genomic RNA; STD; VRL; 3643 BP. XX AC HQ316635; XX DT 28-OCT-2010 (Rel. 106, Created) DT 28-OCT-2010 (Rel. 106, Last updated, Version 1) XX DE Alfalfa mosaic virus strain HZ segment RNA1, complete sequence. XX KW . XX OS Alfalfa mosaic virus OC Viruses; Riboviria; Bromoviridae; Alfamovirus. XX RN [1] RP 1-3643 RA Jin L., Qin Z., Chen J.; RT "The complete sequence of Alfalfa mosaic virus isolate from China"; RL Unpublished. XX RN [2] RP 1-3643 RA Jin L., Qin Z., Chen J.; RT ; RL Submitted (27-SEP-2010) to the INSDC. RL Institute of Bioengineering, Zhejiang Sci-Tech University, Xiasha 2# Road, RL Hangzhou, Zhejiang 310018, China XX DR MD5; 33a359fdab2745219af14d3bf84ff933. DR RFAM; RF00196; AMV_RNA1_SL. DR RFAM; RF00252; Alfamo_CPB. XX CC GenBank Accession Numbers HQ316635-HQ316637 represent the complete CC genome of Alfalfa mosaic virus strain HZ. XX FH Key Location/Qualifiers FH FT source 1..3643 FT /organism="Alfalfa mosaic virus" FT /segment="RNA1" FT /lab_host="Nicotiana glutinosa" FT /strain="HZ" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Oct-2009" FT /db_xref="taxon:12321" FT CDS 100..3480 FT /codon_start=1 FT /product="P1 protein" FT /db_xref="GOA:E3VWL5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E3VWL5" FT /protein_id="ADO85715.1" FT /translation="MNADAQSTDSGLSMREPLSHASIQEMLRRVVEKQAADDTTAIGKV FT FSEAGRAYAQDALPSDKGEVLKISFSLDATQQNILRANFPGRRIVFSNSSSSSHCFAAA FT HRLLETDFVYRCFGNTVDSIIDLGGNFVSHMKVKRHNVHCCCPILDARDGARLTERILS FT LKSYVRKHPEIVGEADYCMDTFQKCSRRADYAFAIHSTSDLDVGELACSLDQKGVMKFI FT CTMMVDADMLIHSEGEIPNFNVRWEIDHKNDLIHFDFIDEPNLGYSHRFSLLKHYLTYN FT AVDLGHAAYRIERKQDFGGVMVIDLTYSLGFVPKMPHSNGRSCAWYNRVKGQMVVHTVN FT EGYYHHSYQTAVRRKVLVDKKVLTRVTEVAFRQFRPNSDAHSAIQSIATMLSSSTNHTI FT IGGVTLISGKPLSPDDYIPVATTIYYRVKKLYNAIPEMLSLLDKGERLSTDAVLKGSEG FT PTWYSGPTFLSALDKVNVPGDFVAKALLSLPKRDLKSLFSRSATSHSERTPVQDENPVR FT CTDGVFYPIRMLLKCLGSDKFESVTITDPRSNTETTVDLYQSFRKKIETVFSFILGKID FT GPSPLISDPVYFQSLEDVYYAEWHQGNAIDASSYARTLLDNIRKQKEESLKAKAKEVED FT AQKLNRAILQVHAYLEAHPDGRKIEGLGLSSQFIAKIPELAIPTPKPLPEFEKNAETGE FT ILRINPHSDAILEAIDYLKSTSANSIITLNKLGDHCQWTTKGLDVVWAGDDKRRAFIPK FT KNTWVGPTARSYPLAKYERAMSKDGYVTLRWDGEVLDANCVRSLSQYEIVFVDQPCVFA FT SAERIIPSLEKALGLEAHFSVTIVDGVAGCGKTTNIKQIARSSGQDVDLILTSNRSSAD FT ELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE FT VIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVK FT TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQG FT KTFDNVYFCRLTRTSTSLTTGRDPINGPCHGLVALSRHKKTFKYFTIAHDSDDVIYNAC FT RDAGNTDDSILARSYNTNF" XX SQ Sequence 3643 BP; 1042 A; 757 C; 797 G; 1047 T; 0 other; gtttttatct tacacacgct tgtgcaagat agttaatcca tttattttcc ttgcactttc 60 cacagcatta cgttcattca atactgtgaa gaattcacta tgaatgctga cgcccaatcc 120 accgattccg gccttagtat gcgagaacct ttatctcatg cctccattca ggagatgctt 180 cgacgtgtag tcgaaaaaca agctgcagac gacacaaccg cgatcggaaa ggttttctcc 240 gaagcgggtc gtgcctatgc ccaggatgct ctcccttcag acaaaggtga agtcttgaag 300 atatcctttt ccctggacgc cacgcaacaa aacatactac gcgccaactt tcctggtcga 360 cgtattgtat tttcaaacag ttcgagttca tctcactgtt ttgcggctgc ccatcgtcta 420 ctagaaactg attttgttta ccgatgtttc ggtaatacgg ttgatagtat catagacctt 480 ggaggaaatt tcgtttccca tatgaaggtg aagcggcata atgtacattg ctgctgtccc 540 atattggatg ctagagacgg agctaggctc acggagagaa tattgtctct aaagtcgtat 600 gtccgaaaac acccggaaat tgtgggtgaa gcagattact gtatggacac gtttcagaaa 660 tgctcaaggc gagctgacta tgcttttgcc atccattcta ctagcgatct cgacgtggga 720 gagttggcat gtagtttgga ccaaaaaggc gttatgaaat tcatttgcac catgatggtt 780 gatgcagata tgttaattca tagcgagggg gaaattccta actttaatgt tagatgggag 840 atcgatcata agaacgatct cattcatttc gacttcatcg acgagcccaa cttgggatat 900 agtcatcggt tttcattgct gaaacactat ttgacttaca atgccgttga tttgggtcat 960 gctgcttatc gaatcgaacg taagcaagat tttggaggtg tgatggttat tgacttaact 1020 tattcccttg gatttgtccc caagatgcca cactccaatg ggaggtcctg cgcctggtat 1080 aatagagtca aaggacaaat ggtagtgcac accgttaacg aggggtacta tcatcattca 1140 taccagacag cagtgaggcg gaaagtgctt gtcgacaaga aagtgcttac cagagttact 1200 gaagtcgcct ttaggcaatt cagacctaat tctgatgctc attccgcaat tcagtccata 1260 gcgactatgt tatcttcttc aacgaatcat accattatcg gtggtgtgac tctgatttcg 1320 ggcaaacctc tcagcccgga tgactatatt ccagtggcaa caacgattta ttatagagtg 1380 aaaaaactct ataacgccat tccagagatg ctatccctcc tagacaaagg agagaggcta 1440 tcaactgatg ctgttttaaa agggtctgaa ggtccaacgt ggtattctgg tcctaccttt 1500 ttaagcgcgc tggataaagt caatgttcct ggtgattttg tcgccaaagc tctgttgtcg 1560 ttacctaaga gagatctgaa atctctattt tctaggtcag cgacttctca ttctgaacgg 1620 acaccggttc aggatgagaa ccccgttcga tgcacagacg gtgtcttcta ccctataagg 1680 atgttgttga aatgcctagg aagtgacaaa tttgagtcgg tcactataac tgatcctaga 1740 agtaacacgg aaactaccgt ggatttatac caatctttcc gaaagaaaat tgaaacggtt 1800 ttctcattca ttcttggaaa gattgatggt ccttcacccc taatttctga tccagtatac 1860 ttccaatcac ttgaagatgt gtactatgct gaatggcacc aaggaaatgc catcgatgcg 1920 tcaagttacg cacgtaccct gttagacaat atcaggaagc agaaagaaga gagcttaaaa 1980 gctaaagcga aggaagttga agatgctcaa aaattaaata gagcaatttt gcaagttcat 2040 gcctatttgg aagctcatcc agatggaaga aaaatcgaag gactggggtt gagttctcag 2100 ttcatcgcaa aaatccccga gcttgcaatt ccaacgccaa aaccgttacc tgaattcgag 2160 aagaacgcag aaactggcga aattttgcgt atcaaccctc attcagatgc cattcttgaa 2220 gcaatcgatt acttgaagtc cacttcagcc aattctatca ttaccttgaa taaattgggt 2280 gatcattgtc agtggacgac aaaaggtctt gatgtagtat gggccggtga cgataaacgt 2340 cgagctttca tcccaaagaa aaatacttgg gtcggaccta ctgctagaag ttatcccctt 2400 gcaaaatatg aaagagcaat gagcaaggat ggatatgtaa ctctgagatg ggacggagaa 2460 gttctagatg ctaattgcgt caggagttta tctcaatatg agattgtctt tgttgaccaa 2520 ccttgcgtct ttgcctcagc ggaacgtatc attccaagcc tagagaaagc cctaggtctt 2580 gaagcgcact tttcagttac gattgttgat ggagttgctg gttgcggaaa aaccaccaat 2640 atcaagcaaa tagcccgttc atcgggtcag gatgtggatt tgatccttac cagcaatcgt 2700 agctctgccg atgagttaaa agaaaccatc gattgttcac cgttgacaaa gttgcattac 2760 attcgtacct gtgattctta cttgatgtct gcctcggcgg taaaagcaca gaggttaatt 2820 tttgatgaat gttttttgca acatgcaggt ttagtctatg ccgctgccac tttagctggt 2880 tgcagcgaag tcattggttt tggtgacacg gaacaaattc cttttgtctc aaggaatccg 2940 tcatttgttt ttcgtcatca taagctaact gggaaagtcg agaggaaact aattacctgg 3000 agatccccag cagatgccac ctattgcctt gaaaagtatt tttacaagaa caagagaccg 3060 gtgaagacaa attccagagt actaagatct atcgaagttg tgccgataaa ttcccctgtg 3120 agcgttgaga gaaataccaa cgctctttat ttgtgtcata ctcaagctga aaaggcagtt 3180 ttgaaagctc aaacacattt aaagggatgt gataatatct ttactactca tgaagctcag 3240 ggtaagactt tcgacaatgt ttatttctgt cgtttaactc gtacctcaac gagtcttact 3300 actggtagag atccaataaa tggtccatgc catggattag ttgccttgtc gagacacaag 3360 aagactttta aatattttac catcgcccat gatagcgatg atgtgatcta caatgcttgt 3420 agagatgccg gtaataccga cgatagtatt ttagcgagga gctataatac taatttctga 3480 attagtcatt ggtaattcaa tgccaacctc cactgggtgg attaaggttg aggtatagaa 3540 ccctattcgc tcctgatagg aaagattcta tattgcttat atacatgctt atgcatgtat 3600 ataaatgctc atgctaaatt gcatgaatgc ccctaaggga tgc 3643 //