ID HQ245321; SV 1; linear; genomic RNA; STD; VRL; 5716 BP. XX AC HQ245321; XX DT 07-JUN-2011 (Rel. 109, Created) DT 07-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate CHN-GD-ZJ17, partial genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5716 RA Wang M., Xu D., Zhou G., Li R.; RT "Evaluation of genetic diversity of Sugarcane yellow leaf virus in China by RT RT-PCR-RFLP analysis and nucleotide sequencing of viral genome"; RL Unpublished. XX RN [2] RP 1-5716 RA Wang M., Xu D., Zhou G., Li R.; RT ; RL Submitted (10-SEP-2010) to the INSDC. RL College of Natural Resources and Environment, Plant Pathology, Laboratory RL of Plant Virology, South China Agricultural University, Tianhe, Wushan, RL Guangzhou, Guangdong 510642, China XX DR MD5; 71bd345035d17f3c31f10bf4174c3123. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5716 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar" FT /isolate="CHN-GD-ZJ17" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="leaf" FT /collection_date="Aug-2008" FT /db_xref="taxon:94290" FT CDS 1..771 FT /codon_start=1 FT /product="P0 RNA silencing suppressor" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:F8RUF0" FT /protein_id="AEG89000.1" FT /translation="MLFNEFSVEGIKSRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQNYYGPNTPVYNWLEHICLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDLLERG FT YDTFRSVLGVHLLEHERFVSRILEQPVMEPDQAVRLCFHHHNALDHDDDDSGLETDFDN FT LSLGRPYINGLPPNEKIIFIHSNLVGRSTYSHDI" FT CDS join(176..1669,1669..3387) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF 1 gene product" FT /db_xref="GOA:F8RUF1" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F8RUF1" FT /protein_id="AEG88996.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKSPPPDKPVENAIAKEQTPAPTVEKAMVADSADSRPGKRAKWRRPLKNT FT GIHPAQARRIYKRVAQQHRLAVDSKDRPELHCNEGGGETAASGPEQTAAERREEVAQKT FT QDLEHFFQAAYKWEESTSDIPGFRKCGKLPALYHPPKPKSTQWGERIISEHPEMASKVA FT GFGWPSFGAQAEETSLRLQAARWLKRAESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHT FT SSSGSLIWSDFLKDFKEAVNSLELDAGIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWN FT RLQKMSQVDFQEMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWRNKI FT VPTDCSGFDWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLY FT AQTHPGVQKSGSYNTSSSNSRIRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFK FT VEVASQLEFCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNE FT LRHDPQLVATLHEWLVPGAATK" FT CDS 176..2128 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:F8RUF2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:F8RUF2" FT /protein_id="AEG88995.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKSPPPDKPVENAIAKEQTPAPTVEKAMVADQPTPDQGNEPSGADHLKTP FT ESTPLKQDESTRELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPVISQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP FT VSGGPPSAPKPKRQV" FT CDS 3582..5612 FT /codon_start=1 FT /transl_except=(pos:4170..4172,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; produced by translational readthrough of TAG FT stop codon of ORF 3" FT /db_xref="GOA:F8RUF3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:F8RUF3" FT /protein_id="AEG88999.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAALNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIMGEDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPEAPE FT QPTTEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLVPTHADTLRQADKVRRALMANASRSASPPPTNTEVPVLGATDTASLS FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLQALPE FT ATREQRREYERLKNSQGKTVAKAHAKEHGYKPPKSSSSLFG" FT CDS 3582..4172 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:F8RUF4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F8RUF4" FT /protein_id="AEG88997.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAALNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIMGEDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3613..4065 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:F8RUF5" FT /protein_id="AEG88998.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLQASPSRGTPRKSSRPPSSWGKIS" XX SQ Sequence 5716 BP; 1524 A; 1496 C; 1377 G; 1319 T; 0 other; atgcttttca acgaattctc tgttgaggga attaaatcca gagcacacga aagcacttca 60 cccgtctttc gtggggaggt ttccaggtgt ttgacctact acagagtctt cgcctgcaag 120 tgggttgagt tgacctatca agatccactc acacgccatc tagttcaaaa ctactatggc 180 cccaacactc ccgtttacaa ctggctggag cacatatgcc ttattgttgt cactatggtg 240 cctattctgc tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac 300 ctccagtctg tccttttatg gcttgcccgc aacaaactct actatagagt taagagatgc 360 cgttccaagc ggtttgtact cgagcaagat cacatcggcc ccgaactttt ccgaactcag 420 ctactccagt atgctgggtt ggatgttttt caagatgtgg ctcgattgca agaccttctc 480 gagagaggct acgacacttt ccgatcggtt cttggagtac accttctcga acacgaaagg 540 tttgttagtc gaattcttga acaacctgtt atggaacctg atcaagctgt acgtttatgc 600 tttcaccatc ataacgcgct tgatcatgac gatgacgatt ctggcctgga aaccgatttt 660 gataatctgt ctcttggtcg tccttacatc aatggtctac cacctaatga gaaaattatt 720 ttcattcatt caaatttggt gggtcgtagc acctattctc atgatatata ggaccgtcac 780 gtacattcac agaaggttgt tcgcttcacg tggggacgag aaaatggtcc aaggtttcaa 840 aagttttgcc gtccccatgt caccaccagg acactcagtg cttgagatag tacaccccga 900 tgattctcac atgggatatg catcctgtgt tcgattgaaa aacggggaag aggctctcat 960 gacatctgtt cactgcataa gcgattcttt caaggttcgc tcgttcagga atggtatcaa 1020 gatccctcta acggaattcc aagtgctgtt gcccgccaat gcgatggaca ttgttcttct 1080 tcgaggccca cctgagtgga agtccatcct tggagccaaa gcagcccact tcactccagt 1140 caaccagctc aacaaaggag ctgtgtcttt ctttattttc gacaaggagt ggatgatgca 1200 caacgcaaaa gtcacaggaa ctgatggttt ttatgccaca gttcttagta acactgagaa 1260 gggctacagt ggcgccccct actggaatgg gaaatctata gtaggggttc ataaagggca 1320 cgtgtacgga gacgattcca agaattacaa tcttatgtcg ccgattcccc ctgtcaaggg 1380 gttaacggcg cctaattttg tgtatgagtc tccgtctctg caaggagatg tctttagcga 1440 cgccgacgtt tcagacattg ctgattacgc cgaggaggtg tatgagaaaa cccttgcaga 1500 gcctaaagtg tggaaacctg ccagcggcaa atactggtgg gaaatggctg aagaagagga 1560 tgattttgtc gttgaggcaa agtcacctcc ccctgataaa cctgttgaga acgctatagc 1620 aaaagagcag actccagctc cgactgttga gaaagctatg gttgctgatc agccgactcc 1680 agaccaggga aacgagccaa gtggcgccga ccacttaaaa acaccggaat ccaccccgct 1740 caagcaagac gaatctacaa gagagttgct caacaacatc gtctcgcagt tgattcaaaa 1800 gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcgtc aggcccagaa 1860 caaacagcag cagaacggag ggaagaagtc gcccagaaaa cgcaagacct cgaacacttc 1920 ttccaagccg catacaaatg ggaagagtcc accagtgata tcccagggtt caggaaatgc 1980 ggcaaactcc ccgcgctata ccatccccca aaaccgaaga gcacacaatg gggagagcgc 2040 atcatctcag agcacccaga aatggcgtcc aaagtcgccg gtttcgggtg gccctccttc 2100 ggcgcccaag ccgaagagac aagtctgaga ctccaagcgg cacgctggct taaacgagct 2160 gagtcagcgg aaaagccgac agaaaaacaa cgcaagctcg tcattgatcg tgtggtcaag 2220 gcatatgaac cgtgtagaac taatgcccca cacaccagct cctctggcag cctcatctgg 2280 tccgacttct tgaaagattt caaggaggct gtcaactcac tagaactcga tgcaggaata 2340 ggtctcccat acaagcttct tcacaaagac actcatcgtc agatggttga ggaccccaaa 2400 ttcctgccgc tcctgacgcg attgacctgg aaccgtttac agaagatgtc ccaggttgac 2460 ttccaggaga tgactcctga acaactagtg agagaaggat tgtgcgatcc gattcgtttg 2520 ttcgtcaaag gagaaccgca caagcaggca aaacttgatg aagggcgcta ccgcctcatc 2580 atgtcagtct cgctggtaga tcaactggta gcccgggttt tgtttcaggc acaaaacaaa 2640 agagagatag ctttgtggag agctatccct tcaaagcccg gtttcggctt atccacagac 2700 agggaagcac gcgaatttat tgaatccctg tccaagacag tagggtgttc cccagcagaa 2760 gtcattcatg gctggaggaa caagatcgta cccaccgact gttccggttt tgactggtca 2820 gtcgccgact ggatgctcga agacgacatg gaagtgagaa atcttctcac aatcaacaac 2880 aacgagctaa cccgccgcct cagggcgtgc tggttgaagt gcatcacaaa ctctgtgatt 2940 tgcacatccg gcggtgtctt gtacgcccaa actcatcctg gagtgcaaaa atctggatct 3000 tacaacacga gttcatccaa ttccaggatt cgagtaatgg ctgcttttca ttgcggcgca 3060 gattgggcga tagccatggg agacgatgca cttgagtctc caaactccaa catcaacgcg 3120 tatcaaaagt tggggttcaa agtcgaggtt gcctcacagc tagaattttg ctcacacgtc 3180 tttgagcagg aggacctcgc caggccgttg aacgtgaaca aaatgcttta tcgtttgatc 3240 tttggataca atccggcctg tggcaacgcg gaggtattgt gtaattacct ccaagctgtg 3300 gcttctgttc tcaacgagct tcgccatgat ccacagctag ttgctaccct ccatgagtgg 3360 ctggttcctg gcgccgccac aaaataaata cggaggggca tcccgagcca ccacataggt 3420 tgcaagagtg gaacgggaag tcctatagat aagccgcgcg attctggatt acaaacttct 3480 agcgggagtt ctcatcggtg ttctcatcgc aatcccccta gtgatcatag cggcttacct 3540 gatattcctc aaaatcagtg cacacatccg agcgatagtg aatgaatacg ggcgctaacc 3600 gctcacgaag gaatgtcaga agacgcgcta accgtcgtag acagactcgg ccagtggtcg 3660 tggtccgggc tcccccagga cctagacgag tacgacgacg tagagcacgt gttggaggaa 3720 acgctgtgcg aggaccggga ggaagaagca accgggatgt tctcactttc acggttgacg 3780 atctcaaagc caactcaacc gggatcctca aattcggacc gaacttatct cagtacgcag 3840 cgctcaacaa tggcttactc aaagcctacc atgagtataa aatcacaagt ctcactattc 3900 agtataactc atgctcctcc gacgcaactc caggtgcaat cgcacttgaa gtggatacat 3960 cctgctccca aacaacaaca ggctccaaga ttacaagctt ccccgtcaag aggaacgcca 4020 agaaagtctt cccggccccc ttcatcatgg gggaagattt catgactacg tcagctgacc 4080 agttttggtt gctgtacaaa gggaatggag actcgagcct agcaggacaa ttcgtctgcc 4140 gatttgaatg ccttttccag aatcccaaat aggtaggcga cgctccccca acacccaccc 4200 caacaccaac cccacccgct ccgaccccgg caccggctcc caagtatttt ggataccaag 4260 gagtgccgaa caacatcgtg aaaacaagag gaaactctga atatctagat gtgggtccgc 4320 tcgaaaatgt gaccatgtat ctttggaaag acgaatcgtg gagcattgag caactgtcag 4380 ccggatatcg cgttaacaat cgagaacgtg ccataccctt tgtcctcttt ccagtggata 4440 aaggcaagta ctccgtgttt atacaatgtg agggctttaa ggcagttaaa gccaaaggag 4500 gcacgaacga cggcaagatg agcgggtttc tttgtgacaa tgcaaatctc gcgggttggc 4560 gagcatacgc atatagtggg tgtacaatct ctaattatag aacatcggac tctaatgttc 4620 ctggtcatcc ggacatgaaa gtcaatggtg gatcttttac cgaccaattg gtcgagagag 4680 atttttcttg ttcatttcac cttgaggtgc ctcaacaagg ctattttggc ctagaggccc 4740 cacccattga aaagagtgat catttcaatt ttgtggtgtc ttacgctaac ttcactgata 4800 aaatcctgga atggggttca atctccgtag cgatagacga ggtgaatgac ggagcgtata 4860 gtagatcaaa atgggataag actactgcaa tgagtgctcg tttgccgact caggtgagcg 4920 ccccctctga ggtttacacc ccggaagcac ctgagcaacc gactaccgaa gggacggaga 4980 gtatgcctcc agccccgaac ccggcactgg gaccggacaa cccagcaacc aaagaaccca 5040 cgcccaaaat cgtggataat ccggacccaa aggtactcaa ctggctcaac aaccagcgag 5100 ataaacctgt ggtggaagag gttttgcgtg aatctccgat ttatgctcct ccaccccccc 5160 cgtctctagt tccgactcat gccgacactt taagacaggc ggataaggtc cggagagctc 5220 tcatggctaa cgcttcacgt tcagcctcac ctcctcccac gaacaccgaa gttcctgttc 5280 ttggggccac tgacactgct tctttaagtg gatcattacg cggtggttcc ctcagaggta 5340 atttgggttc tcgcccctct cttccgaggg tcgctgacag ccctccccgt tctgtaagtc 5400 cggctcgttc cgagaccagc actctacagg gcggttctct gagcggtggt tctttgagag 5460 gtggcaacct ccaggctttg cctgaggcca caagagagca aaggagggaa tatgaacgtc 5520 tcaagaactc acaagggaag acggtggcaa aagctcatgc taaagaacat ggttacaagc 5580 caccgaaatc ttcctcctcc ttgtttggtt gagtgtcgag ccactataac gctccccgcc 5640 ccgggacatg ggactccaat catgagttta aactgagctc tttccacgag cctaaactgg 5700 agaactccgc aaagtt 5716 //