ID HQ201952; SV 1; linear; genomic DNA; STD; VRL; 2625 BP. XX AC HQ201952; XX DT 16-FEB-2011 (Rel. 107, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 4) XX DE Tomato chlorotic leaf distortion virus-[Venezuela:Zulia:2004] segment DE DNA_A, complete sequence. XX KW . XX OS Tomato chlorotic leaf distortion virus-[Venezuela:Zulia:2004] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2625 RX PUBMED; 21853328. RA Zambrano K., Geraud-Pouey F., Chirinos D., Romay G., Marys E.; RT "Tomato chlorotic leaf distortion virus, a new bipartite begomovirus RT infecting Solanum lycopersicum and Capsicum chinense in Venezuela"; RL Arch. Virol. 156(12):2263-2266(2011). XX RN [2] RP 1-2625 RA Zambrano K., Chirinos D., Geraud F., Marys E.; RT ; RL Submitted (30-AUG-2010) to the INSDC. RL CMBC, IVIC, C/Panamericana km 11, Caracas, Caracas 1020-A, Venezuela XX DR MD5; e55b88661200e70561391c9443affdae. XX FH Key Location/Qualifiers FH FT source 1..2625 FT /organism="Tomato chlorotic leaf distortion FT virus-[Venezuela:Zulia:2004]" FT /segment="DNA_A" FT /host="tomato" FT /mol_type="genomic DNA" FT /country="Venezuela" FT /collected_by="Geraud and col." FT /collection_date="2004" FT /identified_by="Zambrano y col." FT /clone="T217L" FT /db_xref="taxon:983437" FT gene 192..950 FT /gene="AV1" FT CDS 192..947 FT /codon_start=1 FT /gene="AV1" FT /product="capsid protein" FT /note="CP" FT /db_xref="GOA:F1C5N7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F1C5N7" FT /protein_id="ADX31890.1" FT /translation="MPKRDLPWRAMPGTSKVTRNANYSPRARIGPTTNRATEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDIAHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMKKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(944..1342) FT /gene="AC3" FT CDS complement(944..1342) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="Ren" FT /db_xref="GOA:F1C5N8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F1C5N8" FT /protein_id="ADX31891.1" FT /translation="MDSRTGEFINARQAENGVYIWEITNPLYFKISQVEDMPYTRTRVY FT HLQIRFNHNLRRALHLHKAYLNFQVWTTSLKASGKTYLFRFRHLVMMYLDQLGVISLNN FT VIRAVRYATDKAYVNHVLENHSIKFKLY" FT gene complement(1089..1493) FT /gene="AC2" FT CDS complement(1089..1493) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="TrAP" FT /db_xref="GOA:F1C5N9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F1C5N9" FT /protein_id="ADX31892.1" FT /translation="MLSSSHSTPPCIKKRHRQAKKKQPKRRAIRRRRLDWGCNCTAYVD FT INCRDHGFTHRGIHQCASSREWRLYLGDNKSPVFQDFPGRGHAIHQNEGVPPPDTVQPQ FT PQESVASPQSLPEFPSLDDIPESFWEDLFV" FT gene complement(1390..2490) FT /gene="AC1" FT CDS complement(1390..2490) FT /codon_start=1 FT /gene="AC1" FT /product="REP protein" FT /db_xref="GOA:F1C5P0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F1C5P0" FT /protein_id="ADX31893.1" FT /translation="MPPPKKFRINSKNYFLTYPQCSLTKEEALSQLQNLKTPVNKKFIK FT ICRELHENGEPHLHILIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGXKSSSDVKSYI FT DKDGDTIEWGEFQIDGRSARGGQQTVNDTYAKALNAASAEQALQIIKEEQPQHFFLQHH FT NLVANATRIFKKAPEPWVPPFRLSSFTNVPDEMQEWADSYFGLDSAARPNRPISLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSKVYSNEVEYNVIDDVSPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENASLRNWTLKNAVFITLD FT SPLYQEETQAGQEETAQEESHQETAS" XX SQ Sequence 2625 BP; 630 A; 580 C; 647 G; 767 T; 1 other; accggatggc cgcgcgattt tttcccccac ccgtacgcgc gccccgcctt taatttgagt 60 taaagcgaaa tctttcgcgt cgtccaatga tattgcgtct gaccagccta gatatttgca 120 aaaaacttgg gccctaagtt tttgggtggt tataaattaa aggcttaacg ggcctatgtc 180 tttaattcaa aatgcctaag cgcgatctcc catggcgcgc gatgcccggt acgtcaaagg 240 tcacccgcaa tgcgaattac tccccacgcg cacgcatcgg cccaacaacg aacagggcca 300 cggaatgggt taacaggccc atgtacagga agcccagaat atatcggacg ctaaggactc 360 ccgatgttcc aagaggttgt gaaggcccgt gtaaggtcca gtcttatgaa cagcgtcacg 420 atattgctca cactggtaag gtgatgtgta tttccgatgt gacacgtggc aatggtatta 480 cccaccgtgt tggtaagcgt ttctgtgtta agtccgtata catattaggc aaggtgtgga 540 tggatgacaa catcaagttg aagaaccaca ctaacagcgt tatgttctgg ttagttaggg 600 accggagacc gtatggcact cctatggatt ttggacaggt atttaatatg tttgataatg 660 agcccagcac tgccaccgtt aagaacgatc tccgtgatcg ttaccaggtg atgaagaagt 720 tctatgccaa ggtgacaggt ggacagtatg ccagcaacga gcaggctctg gtcaagcgtt 780 tctggaaggt caacaattat gtggtgtaca accaccagga ggctgggaag tatgagaatc 840 atacggagaa cgccctgtta ttgtatatgg catgtaccca tgcctctaac cccgtgtatg 900 caacccttaa gattcggatc tacttctacg attcgataat gaattaataa agtttgaatt 960 ttattgaatg attttctagt acatgattga cgtacgcctt gtcggtggcg tatcgtacag 1020 ctctaattac attgttaagg gaaattacgc ctaactgatc taaatacatc ataactaaat 1080 gcctaaacct aaacaaataa gtcttcccag aagctttcag ggatgtcgtc cagacttgga 1140 aattcaggta ggctttgtgg agatgcaacg ctctcctgag gttgtggttg aaccgtatct 1200 ggaggtggta caccctcgtt ctggtgtatg gcatgtcctc tacctgggaa atcttgaaat 1260 acaggggatt tgttatctcc cagatataaa cgccattctc tgcttgacgc gcattgatga 1320 attcccctgt gcgtgaatcc atgatctctg cagtttatgt ctacgtaagc tgtgcaattg 1380 cacccccagt caagacgccg tctcctgatg gctctcctct tgggctgttt cttcttggcc 1440 tgcctgtgtc tcttcttgat acagggggga gtcgagtgtg atgaagacag cattcttgag 1500 tgtccagttc ctgagggatg cgttttcctc tttgttcagg aaatctttat agctggcacc 1560 ctcacctgga ttgcagagca cgattgatgg gatccctcct ttaatttgaa ctggcttccc 1620 gtacttgcaa tttgactgcc agtctttttg ggccccaagg agctctttcc agtgcttcaa 1680 ctttaagtat tgcggagaga cgtcatcaat gacgttatat tccacttcgt tcgagtaaac 1740 ctttgagttg aagtccaggt gtccactcag ataattatgt gggcctaagg cacgagccca 1800 catcgtcttg cctgttcttg aatcaccctc aactatgaga cttattggac gatttggccg 1860 cgcagcggaa tcaagcccaa aataactatc ggcccactct tgcatctcgt ccggaacgtt 1920 agtgaaagag gagagacgaa acggagggac ccacggttcc ggagccttct tgaatattct 1980 ggttgcgtta gcaaccaggt tgtggtgttg aaggaagaaa tgttgtggtt gttcttcctt 2040 tatgatttgc agagcttgct cggcagaggc agcattcaac gcctttgcgt atgtatcgtt 2100 gactgtttgc tgacctcctc ttgcagatct gccgtcgatc tggaattctc cccattcaat 2160 ggtgtctcca tccttgtcga tgtaggactt aacgtccgag cttgatttak ctccctgaat 2220 gtttggatgg aaatgtgctg acctggttgg ggagaccaga tcgaagaatc tgttattcgt 2280 gcactggtac ttcccctcga actggatgag tatgtggaga tgaggctccc cattctcgtg 2340 aagctctctg cagattttga tgaacttctt gtttactggg gtttttaggt tttgtaattg 2400 ggaaagtgct tcttctttag taagagagca ctggggataa gtgaggaaat agtttttgga 2460 gttaattcta aatttcttag gcggtggcat ttttgtaata agaggggtgt acaccgattg 2520 agctcctctc aaacttgctg attgtattgg tgtattgggg taacttatat actagaaggt 2580 tcattaacgg atcgttgaca cgtggcggcc atccgctata atatt 2625 //