ID HM989932; SV 1; linear; genomic RNA; STD; VRL; 3687 BP. XX AC HM989932; XX DT 15-MAR-2011 (Rel. 108, Created) DT 28-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Scophthalmus maximus reovirus segment L3, complete sequence. XX KW . XX OS Scophthalmus maximus reovirus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Aquareovirus. XX RN [1] RC Publication Status: Online-Only RP 1-3687 RX DOI; 10.1186/1471-2164-12-323. RX PUBMED; 21689389. RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT "Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG RT start site"; RL BMC Genomics 12(1):323-323(2011). XX RN [2] RP 1-3687 RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT ; RL Submitted (26-JUL-2010) to the INSDC. RL State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of RL Hydrobiology, Chinese Academy of sciences, Donghu South Road #7, Wuhan, RL Hubei 430072, China XX DR MD5; 9c702980dd87116f277bc17255593f0b. XX CC GenBank Accession Numbers HM989930-HM989940 represent the complete CC genome of Scophthalmus maximus reovirus. XX FH Key Location/Qualifiers FH FT source 1..3687 FT /organism="Scophthalmus maximus reovirus" FT /segment="L3" FT /host="Scophthalmus maximus (turbot)" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Jun-2007" FT /note="acronym: SMReV" FT /db_xref="taxon:994485" FT CDS 19..3648 FT /codon_start=1 FT /product="VP3" FT /note="core protein; helicase; NTPase" FT /db_xref="GOA:F2WJK8" FT /db_xref="InterPro:IPR013087" FT /db_xref="UniProtKB/TrEMBL:F2WJK8" FT /protein_id="ADZ31978.1" FT /translation="MPRTSRNVRATEVATTAIPPTNAATDSTVDTTTAPTIASADAAQH FT ASHITSAQLGAAGIADKVPSSVVTNDGDISVTPISENAAQLASSNQPASVISNPAGAAS FT VSIVNPSALRCQQCGAEFSSMTQLAEHVRTEHRTGAGSLVTSPAINQAIESWLLTWEDL FT RLLAPTIATDALNKYMGESVAKAPLLIIEDSGLCTSFLASDTVSIAGLQRELVGFTWFM FT ETLQMIPALPEGAVNHLICHTGWASKDSASRNLNVRLSPPTHGAVSAYTTVLSKGYVKD FT MQFNLHTFRANALMLSLKFVLSNLKINKSTPLTQDQTPRSRGRYIRFHDDKELLAVAYP FT GREVLMEANRNALFLDEAIPDRVGRIGRAQNVSGDVSAHIDTYELCDDLTLAIREMYHN FT MLFSMHLDPASVMEIVQDVSQQLVAASIPFAQTDTILCPWAASSPTLQLGQVLNLLNVA FT NNTSAALPLIEAAATLIMGITPLRMEPRILSEAIKRVPETTTIVPSPTGELTRLLKPLG FT NDYSAFYRCIAGWLYSGIVQTFISADSYPDPTQSITSIPAIWKSLIVTLAAPMTTDPHA FT AVKAFMSMANLLAQPEPIIIPAPGMTQSTPAVQFGHPEVWPPGFIDPTTLDRNRTPLLH FT ALATMIHAHWPQPGVIPYGSARLGSANLFLPANQLAYPWPTQPLPRITVGPTYDSAMSR FT WIDNVFGFYINVVNSRYVATIVGDTTRRTLIGLMSALRQVKTMTPFYIERMCPTEIAVV FT GGVTVVPPFQVPFSRLDPDQVITNVMVSRVDPQLRADVAVDPIVTMPTLANSLPVDPAA FT IVVAMLCGQTDATLVPSYHYGSAITPMFLSEGIFTRNQRAVIASEAFVCARSIIAQCIP FT DGFQVPRPLQAFNQYNASGSTAADLLKAVDDMFKTAFDLDGSLIEGIGLYGDPRVADLS FT VAYIRQNGAVERVHTAPDSSFIHEAMQVTSQVMINEPNLWAIARGDVILAQNATNNNWD FT PMNPVGLPLIVRGAPGVRVVGQHGMIIPQPGGFSPMIRDETGNPQPIDGDWIYPISVLQ FT VSVANFRDHVWPMIQTGRTRVRIEMGHFLYSIHYHEPFGQITEAPALDAWLAGISPTGV FT PPFPFSAPIPQINIPITARRVYFGYCTMNNNGATFSTLGAAIQSAWGTDVTIQRNRWPA FT LIDPAYIPGHSQLPARIQLYNPLRRYNYRYPVLKGMLYIPGVE" XX SQ Sequence 3687 BP; 793 A; 1229 C; 806 G; 859 T; 0 other; gttttatcat cacgcatcat gccacgcacc tcgcgtaacg tacgcgccac cgaggttgct 60 actactgcca ttcctcctac caatgccgcc actgactcca ccgtcgacac tactactgct 120 ccaactattg ctagtgcaga tgcagctcaa catgcttcac acatcacatc agctcagctt 180 ggagcagctg gaatagcaga caaagtcccc tcatccgtcg tcactaacga tggagacatt 240 tccgtcaccc ctatatccga gaacgcagct cagctagcgt cttccaacca acccgcctca 300 gtcatctcaa acccagcagg agccgcctct gtgtccattg tcaacccatc cgctttacgc 360 tgccaacaat gtggtgccga attctcatcc atgactcagc tggctgaaca tgtccgtact 420 gaacatcgaa ctggtgcagg ttcacttgtc acatcgccag ccatcaacca agcgatcgag 480 tcctggctcc tcacctggga agatctccgt cttctagcac ccaccatcgc caccgatgcc 540 ctcaacaagt acatgggtga atctgtcgcc aaggcgcccc ttctgatcat tgaggactca 600 ggtctctgca catccttcct cgcttcagac accgtctcaa tcgctggtct gcaacgtgaa 660 ctcgtcggat tcacatggtt catggagacc ctccaaatga tccccgcgtt acccgagggt 720 gccgttaatc atcttatctg tcacaccggt tgggcatcaa aagactccgc atcccgcaac 780 ctaaacgtta ggctatcacc acccacgcac ggtgccgtct cagcatacac cacagtgctg 840 tccaaaggct acgtgaaaga tatgcagttt aatctccata ccttcagagc taacgccctc 900 atgcttagcc tcaagttcgt gctgtccaac ctcaagatta acaagtccac tcccctaacc 960 caagatcaga ctccacgttc ccgaggccgc tacatcagat tccatgacga caaggaattg 1020 ctcgctgttg cataccccgg tcgtgaagtg ctcatggagg ccaaccgtaa cgcccttttc 1080 ctcgatgaag ccatcccaga tcgcgtcggt cgtattggtc gtgctcagaa cgtttccggt 1140 gatgtcagtg ctcacatcga cacctacgag ctttgtgacg acctaaccct ggccattcgg 1200 gagatgtatc acaacatgct gttcagcatg cacctggatc ctgcgtcggt gatggaaatt 1260 gttcaggatg tgtctcagca actggtcgcc gcctccattc cattcgctca aactgacacc 1320 attctgtgcc cctgggctgc atcatcccct actctccagc ttggacaggt tctgaacctg 1380 ctgaatgtgg ctaacaatac atcagccgct cttcccctta tcgaagccgc cgctacgctc 1440 atcatgggca tcaccccact ccggatggaa cctaggattt tgtcagaagc catcaaacgt 1500 gtaccagaga ccactaccat cgtgccctct cccactggtg agctcacacg tctactaaaa 1560 ccgttgggta atgactattc tgccttctac cgatgcattg ctggctggct gtatagtggt 1620 atcgtccaga ctttcatctc cgcggactcg tacccagatc ccacgcagtc catcaccagc 1680 attccagcca tttggaagtc tctcattgtg acgttggccg cgccgatgac aacagacccc 1740 cacgcggctg tgaaggcctt catgtccatg gcaaatctgc tggcccaacc agagccgatc 1800 attatccccg ctcctggcat gactcagtcc acgcccgccg ttcagtttgg acaccccgaa 1860 gtgtggccac caggttttat tgatcccacc accttggatc ggaaccggac ccccctgctt 1920 cacgctctcg ccaccatgat ccatgcgcat tggccacaac ctggagttat cccgtacggc 1980 agtgctcgcc ttggttccgc caacctgttc ctccccgcca atcagctggc ttatccttgg 2040 cccacacaac cccttccccg catcacggta ggtcctacct atgactccgc catgtcacga 2100 tggattgaca acgttttcgg cttttacatc aacgtcgtta attcccgata cgtcgcaacg 2160 atcgtaggtg acactactcg tcggaccctc attggcctga tgtccgcctt acgacaggtg 2220 aagacgatga ctccattcta catcgagcgt atgtgcccca ctgagatcgc cgttgtgggt 2280 ggagttacag tcgtgccccc gtttcaagtg ccattctcac ggttagaccc cgatcaggtc 2340 atcaccaacg tcatggtttc gcgcgttgac ccccaacttc gtgctgacgt cgcagtcgac 2400 cccatcgtca ccatgcccac cctggctaat tcccttccag tggacccagc ggccattgtc 2460 gttgccatgc tgtgcggcca gacagacgca actctcgtcc cttcgtacca ctatggatcg 2520 gccatcacgc caatgttcct gtccgaagga atcttcacac gaaaccaacg cgccgtcatc 2580 gcaagtgaag ccttcgtgtg cgctcgatca atcatcgccc agtgcatccc cgatggcttt 2640 caggtacccc ggcctctgca agccttcaac cagtataacg cgtctgggag caccgccgcc 2700 gatctcctca aagcagtgga cgatatgttc aaaaccgcgt tcgaccttga cggctcgttg 2760 atcgagggca ttggattata tggtgaccca cgtgtcgcag atctatcggt tgcatacata 2820 cgtcaaaacg gtgctgttga acgggtccac acagctcctg actcatcctt cattcacgaa 2880 gcgatgcaag tgacttctca ggttatgatc aacgaaccga acctgtgggc aatcgcgaga 2940 ggtgacgtca ttctggccca gaacgcgacc aacaacaatt gggaccccat gaacccggtc 3000 ggccttcccc ttatcgttag aggcgctcct ggcgtacgtg tcgtcggtca gcatggcatg 3060 atcatccctc aacctggtgg cttctcaccc atgattagag acgaaactgg caacccccag 3120 cccatcgacg gtgattggat ctatcccatt agcgttctcc aagtttcggt agccaacttc 3180 cgtgatcacg tctggcccat gatccaaact ggccgcacgc gcgtacgcat cgagatgggc 3240 cactttctct attccatcca ctaccacgaa cccttcggtc agatcactga agcccccgct 3300 ttggatgcct ggcttgctgg catttccccg accggtgtcc cacctttccc gttcagcgca 3360 cctatccccc agatcaacat tcccattaca gcgcgacgcg tgtacttcgg ttactgtact 3420 atgaacaaca acggagcaac cttctccact ctgggagccg ccattcagtc cgcctggggt 3480 actgatgtaa ccatccaacg caatcgatgg ccagcgctga ttgatcccgc ctacatcccg 3540 ggccattccc aacttcccgc tcgtatccaa ctgtacaatc ccttgcgccg ctacaactac 3600 cgctaccccg tgctgaaggg catgttgtat atccccggtg ttgagtaagc gtgcgtgccg 3660 cgcgcctggc tagtggtgat tttcatc 3687 //