ID HM989930; SV 1; linear; genomic RNA; STD; VRL; 3947 BP. XX AC HM989930; XX DT 15-MAR-2011 (Rel. 108, Created) DT 28-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Scophthalmus maximus reovirus segment L1, complete sequence. XX KW . XX OS Scophthalmus maximus reovirus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Aquareovirus. XX RN [1] RC Publication Status: Online-Only RP 1-3947 RX DOI; 10.1186/1471-2164-12-323. RX PUBMED; 21689389. RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT "Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG RT start site"; RL BMC Genomics 12(1):323-323(2011). XX RN [2] RP 1-3947 RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT ; RL Submitted (26-JUL-2010) to the INSDC. RL State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of RL Hydrobiology, Chinese Academy of sciences, Donghu South Road #7, Wuhan, RL Hubei 430072, China XX DR MD5; da2446f4ab64c3649ccb109bf9d7e05a. DR EuropePMC; PMC3135578; 21689389. XX CC GenBank Accession Numbers HM989930-HM989940 represent the complete CC genome of Scophthalmus maximus reovirus. XX FH Key Location/Qualifiers FH FT source 1..3947 FT /organism="Scophthalmus maximus reovirus" FT /segment="L1" FT /host="Scophthalmus maximus (turbot)" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Jun-2007" FT /note="acronym: SMReV" FT /db_xref="taxon:994485" FT CDS 14..3907 FT /codon_start=1 FT /product="VP1" FT /note="core protein; capping enzyme" FT /db_xref="GOA:F2WJK6" FT /db_xref="InterPro:IPR010311" FT /db_xref="UniProtKB/TrEMBL:F2WJK6" FT /protein_id="ADZ31976.1" FT /translation="MATVYGIQLTDRLNTATVRRPLRLRRYDSYITTFTTPNGISQLYR FT ALDFQPTQFSASVLQTFPPLNAWNPAPQFLPDDLDLSQWKEWITDRMRSLATVLQRAYP FT LVANSRREVNPIVIGLVTSAFLNQRPIERFLPLLFLRPGNRDPIAPLVTVDATFSDDTY FT VSNRVLYTPAGLKYLTLRSYDSTKSSAICTFGKHVPFYAIAAFYPDEHARLTILHRYNG FT GPPLIEHFDQPTYGPHVLIPALGSPEGYDTAKPTFADLLLTEGLLDSFRLNASAGPSTA FT VARIDQTYHIVMNGNPSDHTQLATRLSNLSLLAVQGCQMTVQVVDHPSMSDVCGFLVRL FT LGPGDPQRLLNYQTDQILIWQASPFPFGNNPRYIRRQGRVPFTVGNTTYVPDTKTPLPF FT LPQYRRAVVNKNNALASYQENLLPSLPIYHGFALTGGAFFQSRDITGDPANVWPVNTMP FT TLPQDYFSIRSRQRRELLSRLRSPSDRSYIKDLHNISFAATVLNPVNNQIVLSEGFSMA FT YLGAASTHGASDQPLIIDALKNGTVPGVPVPSKVAQFGYDVANGSIMDATLSPPTGTFS FT FVYSDVDQVEDAGLSIVAANRAAAAVTTVALSMTTAGGLTIVKINFPTPAFWTHLFRQH FT AMHARAMYILKPLIVNSVEVFLLFVSRASDGNLVSSPALRQFLVQLFDRSAYLTDLMAH FT VPLLGDVDDGATSLGFNACRLYSPDLPSTNVTPEIQTLAYQLATIVPSTSFIAREDYDG FT ATAVTFYGKRTFLSQNRLDRLVDVPVPATNAINHQTRFTGSPVYQLFPANPAPVTQLLA FT GAYNRLVHSQLARVQPQALVDCGTGPECRVLSLIPPTTAITMIDARPPAELLAAFNPAM FT NQYIEDDFLNPALWVAHPYDALTAIFSLGAAFAGANLDLVVGLTAFLRLVQPGNLQHLW FT LQLNTPLTSNTSLPGLLEIDTRTNQYIFNGGQRTEPYALPNDILTAVRQVFPAATTSWL FT TASPSMDWAEYVIALGSSMSLDDVNTMITYSGLAPILHIDQTQRPMDVPVPLVVGVQAN FT IHVAAPVQQTTVIGTIAGVQVFTADGVTAPSTLGPLAAVWDAALSRWNLTLTPNQAGVL FT DVVVDHAGVMLNRGSTTIALPPATINVTFPQAANRDYTNAGNDAAIVCDPFYRLGVFVS FT VNGTFQPVNPERAAIITAANVRSLHYVYDLSDNHVLMYICDITDNNVGRNIAFPLADIF FT QTVFPNNTPLLASPPYPSASGRLLLNGQPFLDLDPLPPVLPPGVQIQALSTAVEPARQT FT VEVPAGVYVYVVV" XX SQ Sequence 3947 BP; 799 A; 1307 C; 837 G; 1004 T; 0 other; gttttatcac gacatggcga ccgtatacgg cattcaactc actgaccgac tgaacaccgc 60 aactgtccga cgccccctta gacttcgacg ctacgactca tacattacca cttttaccac 120 tcctaatggc atctcccaac tgtaccgcgc tctggatttc caaccaactc agtttagcgc 180 ttctgtttta caaactttcc ctccacttaa cgcctggaat cccgctcctc aattccttcc 240 cgatgatcta gacctatccc agtggaaaga atggattact gatcgaatgc gatcccttgc 300 caccgtactt caacgtgctt acccactagt agccaactca cgtcgggagg tgaaccccat 360 cgttatcggt ctggtcacat cagcgttcct caaccaacgc ccaattgagc gatttcttcc 420 attgctattc cttcgaccag gaaaccgcga tcctatcgcg cccttggtaa cggtggatgc 480 cactttctct gacgatacct acgtctcaaa ccgtgttctg tacacgcctg ccggtctcaa 540 gtatctaacc ttaaggtcgt atgattccac gaaatcatcc gctatctgta ccttcggtaa 600 acacgttcca ttctacgcca tcgctgcttt ctatcccgac gagcacgccc gactgaccat 660 cctccatcgt tacaacggcg gaccacctct aatagagcat tttgatcaac caacgtacgg 720 accccacgta ctcattcccg cacttggctc ccctgagggt tatgatacgg ccaagccgac 780 gttcgccgat ctcctcttga ctgagggact tctcgattca ttccgcctaa acgcctcagc 840 cggcccctca actgccgtgg ctcgtatcga ccagacttat catattgtca tgaatggcaa 900 cccaagtgat cacacccagt tggccactcg cctgtccaat ctgtcactac tcgctgtcca 960 aggttgtcag atgacggttc aggttgttga ccatccatcc atgtcggacg tctgtggctt 1020 tctagtgcgc cttctcggcc ccggtgaccc tcaacggttg ctcaactatc aaaccgatca 1080 gattctaatc tggcaggcta gccccttccc ctttggtaac aaccctcgtt atatcagacg 1140 tcaaggtcgc gtaccgttca ccgtcggtaa cacgacgtac gtgccagaca ccaagacccc 1200 actaccattc cttccccagt atcggcgtgc tgttgtgaat aagaacaacg ctctggcgtc 1260 ataccaagag aatctcttgc ctagtttacc aatctaccac ggtttcgctc tcaccggtgg 1320 tgccttcttc caatctcgtg acattactgg tgatcccgct aatgtatggc cggtgaatac 1380 tatgcctact ctgcctcaag actattttag catccgttcc aggcagcgtc gcgagctact 1440 ctcccggctg cgatcaccgt cagatcgttc gtacatcaag gaccttcata acatctcgtt 1500 cgctgctacc gttctcaacc ccgtgaataa tcagatcgtc ctctctgaag gtttctccat 1560 ggcttacctt ggcgccgcct ccacccacgg tgcatcggat caaccactca tcatcgacgc 1620 gctcaagaat ggaactgtcc caggagtccc cgtgccatcc aaagtggctc aatttggtta 1680 tgacgtcgcc aatggtagca tcatggacgc gactctctcg ccaccaactg gaacgttctc 1740 ctttgtttac tcagacgtcg accaagtgga ggacgctggc ctatccatcg ttgccgctaa 1800 ccgggctgca gctgctgtga cgaccgtcgc attatccatg actacggcag gtggtctaac 1860 gatcgtgaag attaacttcc cgactcccgc tttctggact cacttgttcc ggcagcacgc 1920 catgcatgcg cgcgcgatgt acatcctaaa accgttgatc gtgaactcag tggaggtctt 1980 cctcctgttc gtcagccgcg cttccgacgg taacctggtc tcctcccccg ccttgcggca 2040 attcctagtc cagctttttg acaggtcagc gtatctaact gacttgatgg ctcacgtccc 2100 tttgctcggt gatgtagatg atggcgcgac ctccctcggc tttaacgctt gtcgactgta 2160 tagccctgac ctcccctcta ctaacgtcac gcccgagata cagactcttg cctaccaact 2220 ggctacgatc gtgccgtcca cctcgttcat cgcccgtgag gattatgatg gggctacagc 2280 cgtcacgttc tacggtaaac gtacattcct gtcccaaaac cgccttgacc gtttggtaga 2340 cgtcccagtt cccgcaacca atgccatcaa tcatcagacg cgcttcactg gctccccggt 2400 gtaccagctg tttcctgcca atcccgctcc tgtcacccaa cttctcgctg gcgcgtataa 2460 ccgtttagtt cactctcagc tcgctcgtgt ccagccccaa gctctagtgg actgtggaac 2520 gggtccggaa tgccgcgtcc tctcgctcat acctcccacg actgctatca ccatgattga 2580 cgcgcggccc ccggctgaat tgcttgcagc cttcaatccg gctatgaacc agtacattga 2640 ggatgacttc cttaacccgg ctctttgggt cgcgcatccg tatgacgcct taaccgctat 2700 cttctcttta ggagctgcct tcgcaggtgc caacttagat cttgtcgtcg gtctgacagc 2760 cttcctgcgc cttgttcaac caggtaacct ccagcacctt tggctgcagc ttaacacacc 2820 cctcacatcc aacacttctc tccccggcct attggagatt gacaccagga ctaatcaata 2880 catcttcaac ggaggacagc gcaccgagcc ctacgcttta cccaatgaca ttttgactgc 2940 agtgcgtcag gtattccccg cggccaccac ctcctggctg actgcttccc catcgatgga 3000 ttgggctgag tacgttatcg ctctgggctc ctcaatgtcg ttagatgacg tcaacacgat 3060 gatcacttac tcaggcctgg ctcccattct tcacattgat caaactcagc ggcccatgga 3120 cgttcctgta cctttggttg ttggagtcca agctaatatc catgtcgctg cccccgtcca 3180 acagaccacc gtaattggca cgatcgccgg cgttcaagtc tttaccgctg atggcgtgac 3240 cgccccctcg accttgggcc ccttagctgc cgtttgggac gctgcgctat cccgttggaa 3300 ccttactctc acgcccaatc aggccggagt cttggacgtt gttgtggacc atgctggtgt 3360 tatgctcaac cgtggctcaa ccactatcgc attaccaccc gctaccatca atgtcacctt 3420 ccctcaagcg gctaaccgag actacactaa cgctggtaac gacgcggcca tcgtatgcga 3480 ccctttttat cgtctcgggg tcttcgttag tgtgaacggt actttccagc ccgttaaccc 3540 agaacgtgcc gccatcatta ctgctgccaa cgtcagatct ctccactatg tatatgacct 3600 ctctgacaat cacgttctga tgtacatatg tgacatcact gacaacaacg tgggccgcaa 3660 cattgccttc ccgctcgccg acatcttcca aactgtgttc ccaaacaata ctccactcct 3720 cgcctccccc ccctacccct ctgcctcggg tcgactactg ctgaatggcc agccgttcct 3780 agacctggac cccctcccac cggtattacc tccaggtgtt cagatccagg ccttatctac 3840 cgcggtcgaa ccagcgcgcc agacggttga ggtgccagcg ggtgtctacg tgtatgtggt 3900 tgtttagtct tggtgagcgc cccgcggttc gcgtcgtgct attcatc 3947 //