ID HM851186; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC HM851186; XX DT 23-DEC-2010 (Rel. 107, Created) DT 23-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tomato leaf curl Karnataka virus clone IKB3 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl Karnataka virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RA Haq Q.M.I., Ali A., Malathi V.G.; RT "Tomato leaf curl Karnataka virus: isolated and characterized from Northern RT India (New Delhi)"; RL Unpublished. XX RN [2] RP 1-2760 RA Haq Q.M.I., Ali A., Malathi V.G.; RT ; RL Submitted (22-JUL-2010) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Campus, New Delhi, Delhi 110012, India XX DR MD5; e6a17e6d002b4d30a4034f516b8befc7. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Tomato leaf curl Karnataka virus" FT /segment="DNA-A" FT /host="tomato" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /collection_date="27-Jun-2009" FT /clone="IKB3" FT /db_xref="taxon:220932" FT gene 144..500 FT /gene="AV2" FT CDS 144..500 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7CYG6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7CYG6" FT /protein_id="ADT80801.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVHDVQKSRCP" FT gene complement(295..852) FT /gene="AC5" FT CDS complement(295..852) FT /codon_start=1 FT /gene="AC5" FT /product="unknown" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:E7CYG7" FT /protein_id="ADT80806.1" FT /translation="MPLPQHLITISVHILNSSSARLVVKHIEHLSKVLWLVNRTTVTNK FT KKHDTVRVVLGLDVLIHPYLPQNVNRLNTKPFTHSMGQPSSTSDITNTHDLAYMDYIVS FT GLKRLDLTWAFTSSRDIWTSVHHVHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVE FT TATYLRSGSGNDYICWSLRHNF" FT gene 304..1074 FT /gene="AV1" FT CDS 304..1074 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7CYG8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7CYG8" FT /protein_id="ADT80800.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYMMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1071..1475) FT /gene="AC3" FT CDS complement(1071..1475) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:E7CY76" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7CY76" FT /protein_id="ADT80804.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKIIEHHNRPFLMNQDI FT ITVQVQFNHNLRKVLGIHKCFLVFRIWMTSQPPTGRFLRVFKTQVIKYLNNLGVISINN FT VIRAVDHVLWNVLHHVVYVDQTYSIKFNIY" FT gene complement(1216..1620) FT /gene="AC2" FT CDS complement(1216..1620) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7CY77" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7CY77" FT /protein_id="ADT80803.1" FT /translation="MRSSSPSKAHSTQVPIKVTHRLAKKGNRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGI" FT gene complement(1523..2608) FT /gene="AC1" FT CDS complement(1523..2608) FT /codon_start=1 FT /gene="AC1" FT /product="replication intiation protein" FT /db_xref="GOA:E7CYH1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7CYH1" FT /protein_id="ADT80802.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDVVDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKGSQDYVLQFH FT NLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPIRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLNLSQKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNIKYQKPVQIKGGIPTIFLCNPGPDSSYKEFLDEEKNSKLKNWAVKNAIFVTLEGPL FT YSGSNQSDAQASQEGEQASSC" FT gene complement(2158..2451) FT /gene="AC4" FT CDS complement(2158..2451) FT /codon_start=1 FT /gene="AC4" FT /product="PTGS suppressor protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7CYH2" FT /protein_id="ADT80805.1" FT /translation="MGLLTCMCSSSSKESSSAKTIDSSTSHPQPGQHISIRTFRELRAQ FT AMSNPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2760 BP; 744 A; 549 C; 633 G; 834 T; 0 other; accggatggc cgcgaatttt tttgtgggcc cctcaacgca ctaactgaca aggacatgct 60 aaccaatcac atgacgcgct caaagcttaa ttgttttgtg gtcccctatt taaacttcgg 120 caccaagtat tgtattttgc actatgtggg atccattgtt aaacgagttt cctgaaaccg 180 ttcacggttt tagatgtatg ttagcagtta aatatctgca gttagtagaa aagacctatt 240 ctcccgacac attaggttac gatttaatta gggatttaat ttcagttatt agggctagaa 300 attatgtcga agcgaccagc agatataatc atttccactc ccgcttcgaa ggtacgtcgc 360 cgtctcaact tcgacagccc atatgtgagc cgtgctgctg cccccattgt ccgcgtcacc 420 aaagcaaaag catgggcgaa caggcccatg aacagaaagc ccaggatgta catgatgtac 480 agaagtccag atgtccctag aggatgtgaa ggcccatgta aggtccagtc gtttgagtcc 540 agacacgatg tagtccatat aggcaaggtc atgtgtatta gtgatgtcac tcgtggaact 600 gggctgaccc atcgagtggg taaaaggttt tgtgttaagt ctgtttacgt tttggggaag 660 atatggatgg atgagaacat caagaccaag aaccacacga acagtgtcat gttttttctt 720 gttcgtgacc gtcgtcctgt tgacaagcca caagactttg gagaggtgtt caatatgttt 780 gacaacgagc ctagcactgc tactgttaag aatatgcaca gagatcgtta tcaggtgttg 840 aggaagtggc atgcaactgt caccggtgga cagtatgctt caaaggaaca ggcattagtg 900 aagaagtttg ttagggttaa taattatgtt gtttataacc agcaagaggc tgggaaatat 960 gagaatcatt cggagaatgc attgatgttg tatatggcgt gtactcacgc ctctaaccct 1020 gtgtatgcta ctttgaagat acggatctat ttctatgatt cagtatcgaa ttaataaata 1080 ttgaatttta ttgaatatgt ttggtctaca tatacaacgt ggtgtaatac attccataat 1140 acatgatcaa cggctctaat tacattgtta atactgataa ctcctaaatt atttaaatac 1200 ttaatcactt gggtcttaaa tacccttaag aaacgaccag tcggaggctg tgaggtcatc 1260 cagattcgga agactaggaa acatttgtgt atccccaaca ctttcctcag gttgtgattg 1320 aactgtactt ggacggtgat gatgtcttgg ttcatcagga atggccggtt gtgatgctct 1380 attatcttga aatatagggg attttgaatc tcccagataa acacgccatt ctctgcttga 1440 gctgcagtga tgagttcccc tgtgcgtgaa tccatggtcg tggcaggcta atgctatgaa 1500 gtaagaacag ccgcacggta gatcaacacg acgacgcctg ttccccttct tggctagcct 1560 gtgcgtcact ttgattggaa cctgagtaga gtgggccttc gagggtgacg aagatcgcat 1620 tctttacagc ccagttttta agtttagaat tcttttcttc atccaagaat tctttatagc 1680 tggagtcggg tcctggattg cagaggaaga tagtgggaat tccgccttta atttgaactg 1740 gcttctggta ctttatattt gattgccagt ccctttgggc ccccatgaat tccttaaagt 1800 gctttaggta gtgggggtct acgtcatcaa ttacgttata ccaggcatca ttactgtaga 1860 ccttttggct aaggtttaga tgaccacaca gataattatg tggtccaagt gatctggccc 1920 acatcgtctt cccagttcta ctgtcaccct caatcactat acttatgggc cttataggcc 1980 gcgcagcggc actgacgacg ttctcggcag cccactcctc aagttcttct ggaacttgat 2040 caaaggaaga agaagaaaaa ggagaaacat aaacctccat tggaggtgta aaaatcctat 2100 ctaaattaga atttaaattg tgaaattgta aaacataatc ttgggagcct ttttccctta 2160 atatattgag ggcctcaatt ttggaccctg cgttgattgc ctcggcatat gcgtcgttgg 2220 cagattggca acctcctcta gctgatcttc catcgacttg gaaaactcca tgatcaacga 2280 cgtctccgtc tttctccatg taggatttga catcgcttga gctcttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctggttgggg atgtgaggtc gaagaatcta ttgtttttgc 2400 actggaactt tccttcgaac tggatgagca catgcaagtg aggagtccca tcttcgtgaa 2460 gctctctgca gattctaata aattttttgg aagtgggtgt ttggagattt aataattggg 2520 aaagtgcttc ttctttagtg agagagcact tgggataagt gagaaaataa tttttggcat 2580 ttattttaaa ccgattgggg gctgccatat tgacttggtc aatcggtgtc tctcaactat 2640 ctctatgtat cggtgtactg gagtcctata tatatggaga ctctaatggc ataattgtaa 2700 taaaagaact ttaatttgaa attcaaaatg aaaggctaaa gcggccatcc gtataatatt 2760 //