ID   HM591198; SV 1; linear; genomic RNA; STD; VRL; 2176 BP.
XX
AC   HM591198;
XX
DT   03-OCT-2010 (Rel. 106, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 4)
XX
DE   Strawberry latent ringspot virus isolate Blackberry-NZ polyprotein gene,
DE   partial cds.
XX
KW   .
XX
OS   Strawberry latent ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae.
XX
RN   [1]
RP   1-2176
RX   DOI; .1094/PDIS-07-12-0703-RE.
RX   PUBMED; 30722200.
RA   Tang J., Ward L.I., Clover G.R.G.;
RT   "The Diversity of Strawberry latent ringspot virus in New Zealand";
RL   Plant Dis. 97(5):662-667(2013).
XX
RN   [2]
RP   1-2176
RA   Tang J., Clover G.R.G.;
RT   ;
RL   Submitted (28-JUN-2010) to the INSDC.
RL   Ministry of Agriculture and Forestry, Investigation and Diagnostic Centre,
RL   231 Morrin Road, St Johns, Auckland 1140, New Zealand
XX
DR   MD5; 1c22ef9252ffdf6c2b5351612887926e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2176
FT                   /organism="Strawberry latent ringspot virus"
FT                   /host="Rubus sp. (blackberry)"
FT                   /isolate="Blackberry-NZ"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collection_date="Jan-2005"
FT                   /db_xref="taxon:28351"
FT   CDS             <1..2139
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains large and small coat proteins"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:E2IQI6"
FT                   /protein_id="ADN88405.1"
FT                   /translation="PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARAS
FT                   FSFSGVSYGQHDRAALPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLHEELVPASSGGTE
FT                   AIFFSPKSIPVPGSAKFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTF
FT                   MRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLT
FT                   IDELATPSGYSIMNSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGIGPELP
FT                   LTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWK
FT                   GTLVLEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLY
FT                   GYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEY
FT                   IQPTTSLGRLNPATTLVASGAPVVQVGTFDWVEPPSLRLPLGLLQKKFRLLTISKWPKS
FT                   GFLFLPMTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQG
FT                   VLPLRPVCFGATVLDNILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRR
FT                   WVNTHFGATESYGVRTCPAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILK
FT                   PTPPPAIDYYYENTFPVG"
XX
SQ   Sequence 2176 BP; 486 A; 529 C; 515 G; 646 T; 0 other;
     cctctccaac ctgctagact tactaggagt gcctcttaca tgcctatcca gcgctcagga        60
     gctaagacag tcctcacttt tgaggataac caagcatctc tgaaggagca gcagcccttg       120
     caagctcgtg cttccttttc attttctgga gtctcttatg gacaacacga ccgtgctgct       180
     cttccttcag cgccccccca aaagtgttcc tttcacaata gagttgggtg tccgtgtacg       240
     cagcatactg gtgaggcgga accaagcgga ttgcatgagg aacttgttcc tgcatcatct       300
     ggtggtactg aagccatctt tttctcaccg aagagcattc ctgttcctgg tagcgccaag       360
     tttgttggct cccacccctt ttcatttcct ataaacagca atgtcggcac tactgtctac       420
     tctcttcctc tgattagcac ctccttaaaa gacacagagt gggggaggta ttataggagt       480
     tacactttca tgcgctttaa gccaactgtt agattggtct cttctgcacc tatacaggct       540
     aaagggctct tgtggctgtg ttatgatccc tgcgaaactc ttgcaaaata tcctagcagg       600
     gagagagctc taatgctgca aggtgtttgg ttcatgcctg gtagacatga ttctgtcact       660
     ctgacaattg atgaacttgc aacaccctct gggtattcta taatgaatag tgaccacaat       720
     ggagctttca aagtggttat tattaaggac ctagagaatt tcgaggtggc tgaccttggg       780
     atggaattat ccctcttttt agatgtgcag gatataggca tgggaattgg ccctgaactg       840
     cctttgacag atagcttctt gcctcttcgt caagtggtgg ttgactttga tttgtctacc       900
     acaactccta agggtaaggc gcttgtggtg cccctgaatc ctttgcttcc tggctttgac       960
     ggagctcaat ggtatcctag ctgctcctcc tctattttgg agaaccatcg ttactggaag      1020
     ggaactcttg tgctggaggt tattttcaat ttgccagcta tgggtggtgg tactgtggaa      1080
     atgggttttg caaataactc ctattctgga tgggagagtg atgcttatcg ttacttcggt      1140
     tcaacagttg tggatctgcg agcgcacaga ttgctacgtg ccaaggtccc cttgtatggc      1200
     tatggtgggt atctgatggg gggcagtgga tctttatttg ctgtgccgcc acttacagac      1260
     tatggacaat ctttgcggtt tgtcctactt tttacagcgc cactccatat tagtgatgca      1320
     actaagaagg gctctgttat gatccgttat cttgggctag aggattgtga gtatatccag      1380
     cccacaactt ctctgggtag gctgaaccca gcaacgactt tggtggcttc tggggcacct      1440
     gtcgttcagg ttggaacatt cgattgggtg gaaccaccat ccctacggct tcctcttgga      1500
     ctccttcaaa agaagttccg acttctaaca atttccaaat ggcctaagag tggcttcctt      1560
     ttcctcccaa tgacaccaag ctcccacatt ccaaaattgg caggcacttt tgagggcgaa      1620
     gtggaacagc acagtccctt aatgcacagg agtcaagaga atgctcagtg gtgtggttct      1680
     ctcacatact atctttccat ccgctactca ggggccacac ctcagggagt tctccccttg      1740
     agacctgttt gctttggtgc tacagtcctg gataatatat tgggaaaacc ctgttttgta      1800
     gagaaggata catttatcca ggttatgcca atggccgatc ccggggaaac tgtctatctt      1860
     ccaaccactg agagtatcgc tttctatgaa acaccaccta ggcgttgggt gaatactcac      1920
     tttggagcca cagaatcata tggcgtccga acttgtcctg catgggttct cctccagttc      1980
     ccaaatgagg aagcctctca cttaggtgtt agggatgttt ccctgtgggt ggagccaaac      2040
     atcagttatc ggcacgctgt tggtgggttc ccaattctga aaccaactcc tcctcctgct      2100
     atcgactact actacgagaa tacttttccc gtaggctagt ttccgttagc gtttttctta      2160
     ggcatttctc aaggag                                                      2176
//