ID HM581942; SV 1; linear; genomic RNA; STD; VRL; 3013 BP. XX AC HM581942; XX DT 17-APR-2011 (Rel. 108, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate Pepper2 CY-CN segment S, complete DE sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-3013 RX DOI; 10.1007/s00705-011-0935-x. RX PUBMED; 21327785. RA Lee J.S., Cho W.K., Kim M.K., Kwak H.R., Choi H.S., Kim K.H.; RT "Complete genome sequences of three tomato spotted wilt virus isolates from RT tomato and pepper plants in Korea and their phylogenetic relationship to RT other TSWV isolates"; RL Arch. Virol. 156(4):725-728(2011). XX RN [2] RP 1-3013 RA Lee J.-S., Choi H.-S., Kim M.-K., Kim K.-H.; RT ; RL Submitted (21-JUN-2010) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 90c11e2e33cd65f77fc2877a420db601. XX CC GenBank Accession Numbers HM581940-HM581942 represent the complete CC genome of Tomato spotted wilt virus isolate Pepper2 CY-CN. XX FH Key Location/Qualifiers FH FT source 1..3013 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="pepper" FT /isolate="Pepper2 CY-CN" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:F4ZD13" FT /protein_id="AEB33904.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHPLPIRKCRTPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNSELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSEIKKKESKI FT SEAYASGSK" FT gene complement(2086..2862) FT /gene="N" FT CDS complement(2086..2862) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:F4ZD19" FT /db_xref="InterPro:IPR002517" FT /db_xref="PDB:5IP1" FT /db_xref="PDB:5IP2" FT /db_xref="PDB:5IP3" FT /db_xref="UniProtKB/TrEMBL:F4ZD19" FT /protein_id="AEB33905.1" FT /translation="MSKVKLTKENIVALLTQGKDLEFEENQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 3013 BP; 976 A; 549 C; 462 G; 1026 T; 0 other; agagcaattg tgtcataatt ttattcataa tcaaacctca cttagcaaat cacaaaactg 60 taataagaac acaataccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gcagttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaact cagctgtatt ctgattcaag 240 aagcaaaagc agctttggct atactgcaaa ggtagggaat cttccctgcg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaggacataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gtactatccc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gcttatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagagttcca aaggttttga agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatccgctc ccaatccgta aatgtagaac 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat cctcagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actctgagct 1200 aactccagga aagttagacc taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttagac agcatccaaa tcccttcctg gaaaatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcgaa atctttgtta aagcttgatt taagcgagat 1440 caaaaagaaa gaatctaaga tttcagaagc atatgcttca ggatcaaaat aatcttgctg 1500 tgtccagctt tttctaatta tgttatgttt gtttctttct ttacttataa ttatttttct 1560 gttttgtcat ttcttttgaa tttctcctgt ttaatagaaa ctataaaaca aaagtaaaaa 1620 taaaaataaa ataaaaatca aaatgaaaca gaaatcaaaa aatgaaacaa aaatcaaaaa 1680 ataaaataaa aacaacaaaa aaaataaaaa acaaaaaacc acaaaaaaat taaaaaacaa 1740 aaaaccaaaa aagatcccga aagggacaat tttggccaaa tttgggtttt gtttttgttt 1800 tttgtttttt tgttttttgt tttttatttt tatttttatt ttattttatt tattttattt 1860 tatttttatt tttatttttt attttttatt ttttattttt tatttttatt ttatgttttt 1920 gttgtttttg ttattttgtt tatttattaa gcacaacaca cagaaagcaa actttaatta 1980 aacacactta ttttaaattt aacacactaa gcaagcacaa acaataaaga taaagaaagc 2040 tttatatatt tataggttct tttataattt aacttacagc tgcttttaag caagttctgc 2100 aagttttgcc tgttttttaa ccccgaacat ttcatagaac ttgttaagag tttcactgta 2160 atgttccata gcaacacttc ctttagcatt aggattgctg gaactaagta tagcagcata 2220 ctctttccct ttcttaacct gatcttcatt catttcaaat gctttgcttt tcagcacagt 2280 gcaaactttt cctaaggctt cctttgtgtc atacttcttt ggatcgatcc cgaggtcttt 2340 gtattttgca tcctgatata tagccaagac aacactgatc atttcaaagc tatcaactga 2400 agcaataaga ggtaagctac ctcccagcat tatggcaagc ctcacagact tcgcatcatc 2460 aagaggtaat ccataagctt gaatcaaagg gtgagaagca atcttagatt tgatagtatt 2520 gagattctca gaatttccag tttcctcgac aagcctgacc ctgattaagc tatcaagcct 2580 tctgaaggtc atgtcagtgg ctccaatcct gtctgaagtt ttctttatgg taattttacc 2640 aaaagtaaaa tcactttgct taatgacctt cattatactc tgacgattct tcagaaatgt 2700 cagacatgaa ataatgctca tcttcttgat ctggtcaagg ttttctagac aaaaagtctt 2760 gaagttgaat gctaccagat tctgattttc ctcaaattca aggtctttgc cttgtgtcaa 2820 caaagcaaca atgttttcct tagtgagctt aaccttagac atgatgatcg tagaagttgt 2880 tatatgcttt gaccgtattt aactcgaggt gcaaaagtac aactctgtat tccgcagtcg 2940 tttcttaggg ttttaatgtg atgatttgta aggctgagtt ttaaggtttg aataaaattg 3000 acacaattgc tct 3013 //