ID HM566147; SV 1; linear; genomic RNA; STD; VRL; 6414 BP. XX AC HM566147; XX DT 03-MAY-2012 (Rel. 112, Created) DT 03-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Chagres virus segment L, complete sequence. XX KW . XX OS Chagres virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Phenuiviridae; Phlebovirus; unclassified Phlebovirus. XX RN [1] RP 1-6414 RA Palacios G., Savji N., Sze W., Hutchinson S., Tesh R., RA Travassos da Rosa A., Lipkin W.; RT "Genetic diversity of the Phlebovirus genus"; RL Unpublished. XX RN [2] RP 1-6414 RA Palacios G., Savji N., Sze W., Hutchinson S., Tesh R., RA Travassos da Rosa A., Lipkin W.; RT ; RL Submitted (19-JUN-2010) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 West 168th RL Street, New York City, NY 10032, USA XX DR MD5; 5e91c0971ff1a431383f6c4103ba0ac7. XX CC GenBank Accession Numbers HM566146-HM566148 represent the complete CC genome of Chagres virus. XX FH Key Location/Qualifiers FH FT source 1..6414 FT /organism="Chagres virus" FT /segment="L" FT /mol_type="genomic RNA" FT /db_xref="taxon:629727" FT CDS 19..6300 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:I1T325" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR022531" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:I1T325" FT /protein_id="AEL29642.1" FT /translation="MNDIIEIQPTLNFGYNCRQLVHYDCSLYNLELPVFEIERCRGYVK FT VDLDPAAHSAVSTIGSTLKKTMTIQDVNLSNLVHDVTVGHLTPFTDRQFCSVFPVTGDG FT FDGHSPDLIIDCGNSNYYVVEFTTNRAGENAARGAALAKIAKYEIACQNRSVTNSLCLG FT VISVHRDGVWSNLNLTEDDVNELSYRYRFALDLFSEVLKRCPEISSEDTEMSKQTKEIN FT GILSLIDMDWKVTESSFPMFKEKVFNDFQSKGTDEQYISRIISKSLDECHKDLLKSSFL FT GDELNHEQRVQKNREECEEKIDNFIKSYQSQTFLRGTTDHKSTVQIPPWVTLPGEKGKG FT LGCLQSLNVEGNHPMAKIWLKVVRSAILEEIERMYDDPEAELEYAMSGSTSRPDERNKY FT HRLRLDLDHDEELYAACLGVNGKSHRNDGMVNDARERSKKLFSIEHDTTPLETFLSERS FT RDIFSDDNYLYNPLSADRELRVAAMSIHQPRLISNEGSNEFLENHDHYLRSPIGSWSQM FT VSLIGAELSASVKQHVKPRSFIVKRLLDSGIFLLIKPTSSKSHIFVSFAMDKSLWHSNL FT NMETVFKGYINAGDLMVTDFVSFKLSKLTNLCKTNSLLYTAICFWTEVYGFTPWNSMSL FT LCNERSSVAQEICYMTKLSLLTLLEDKATTEELQTITRYIVMEGFVSQPELPKPHKMIQ FT KLPYALRSELQVLLVSKLFMSMRRIAAQPFTLSKKGGQISWSHLFNPFTQSAIREIQPM FT INCCYNGYFKNKEEETEPSVLSKMYKKIIELEHMCPEDDKYLGADDPEEPKMHEFSRSY FT LMECIQHGKQLLARMHGHNFMDLIDEQIVREVSQLTIERLATLKATSNFNENWYVYKDV FT KDKNYTRDKLLVKMSNYASEGNSIALQKFEDCMTTIEKRGSMHICLFKKQQHGGLREIY FT VMGAEERIVQSLVESIAKSIGRFFPSDTLCNPANKTKIPESHGVRARKHCEGSVWTCST FT SDDARKWNQGHFVTKFALMLREFTHPKWWPIIIRGCSMFTEKKMMMNLNFIRILDCHKE FT LKTSDEFANTLFKAYHGEIEVPWAKPGRTYLTTKTGMMQGILHFTSSLLHTLHQEFIRS FT LTFKVFNSKVHPEMSHKMVCDMMQGSDDSSMMLSFPSRDESTIAKCKVAASLCFRLKKK FT LGIYIGIYPSEKSTSNTDFVMEYNSEFYFHSQHVRPTIRWISASCSLPEVETLVARQEE FT AANLLTAITEGGGSFSLASCVQHAQCTLHYMLIGMGVSELFYEYKKAINRWKDPGIGFF FT LMDNPYSAGLGGFRYNLYRAITGTNLQKIYAFFLKKVRGEKDDEDLDNLEPDSCSVSPG FT GALILSSSLKWGSRQKFYRLRDRLNIPSDWLEKINENPAVLYRAPQNGEEIQLRIAEKV FT HSPGVVSSLSSGNAVAKVMASSVYFLSAAIFQDAGKPEFRFLEPSKYSLLHKLAMYESF FT YGHDDLSDDEMLFLFPNIEELRQLDLIVFNKGKIEFVPRSSQREATQTRVVIFDQHNTL FT KVEAEKMVSDKWFGTQKSRIGSTGFNQEWTKLKTIVNWLTDTPKDTLSSSPFTNHVQIR FT NFFARMESKPRAVKITGAPVKKRSGISKISLVIRDNFARCGFLKGIEDSEAIDRSNSSE FT IMKHFMFTILHGPYTEETKKTYVEKVMRDLPDIGIRESDRKTKSNLLGIVQNWVNNPDG FT TAQLIEEVGAGIIGGFVAPQKSALLNGKVIYYGHGSWRGFMDGNQVQIDIYNDKGFPPH FT IESVTICEKTSIWDICGSIRSWADDIGIVNNVDCSRKASRSRLRYWLFEFRACGIDKPF FT GSPVYVVRNNMIRIDPIKESNIRLKVRKSTLNLYVKQNDRDVHILSYTAGDNDLNPVAV FT TRSSDPGVLSAISLFSKEPSSSWLRCDSLPTAYMGMILDLAEGVRVREHIDSPRLMQII FT KTCTESSLRSKVGSVFQIVPGSHDAPQVFDIDSMIDIMIEDMNIESFTSITKDIAENLE FT EAYTTELFDFTDIDLFGPAHHKEISDLAMVSHPLMDEFVEALINRATRKDIRKVLEQGV FT CLKKNEMHFKQLFRCIGRDPSSIKIETGILDIEDETDFDVIG" XX SQ Sequence 6414 BP; 2083 A; 1200 C; 1497 G; 1634 T; 0 other; acacaaagat gcccaataat gaatgatata atagagatac agccaactct gaacttcggg 60 tataactgta ggcagttagt gcactatgac tgctctctat acaacctaga gttaccagtg 120 tttgagatag agagatgtag aggctatgtg aaggtggatt tggatccagc agcccattct 180 gcagtctcaa ctattggatc cacactcaag aagactatga ctatacagga tgtcaatcta 240 tccaatttag tccatgatgt gacagtagga catctcacac cctttacaga caggcagttc 300 tgctctgttt tccctgtgac tggagatggg tttgatggcc actcacctga cctaatcatc 360 gattgtggaa actcaaatta ctatgtggtt gaattcacaa caaacagggc tggagagaat 420 gctgcaaggg gtgcagcact tgccaagata gcaaagtatg agattgcttg ccaaaataga 480 tctgtgacca actcattatg tcttggtgtg atcagtgtgc acagggacgg agtctggtca 540 aacttaaact taactgagga tgatgtgaat gagctatcat acagatacag atttgcttta 600 gatctttttt ctgaggtgct gaagaggtgt ccagaaatta gctcagagga taccgagatg 660 tcaaagcaaa ccaaagagat taatggcata ttatctctta ttgacatgga ctggaaggta 720 actgagagtt catttccaat gttcaaagag aaggtattta atgactttca atctaagggg 780 acagatgagc agtacatatc tagaatcata tcaaagtcac ttgatgagtg tcataaggat 840 ctactaaaat cctcatttct tggggatgag cttaatcatg aacagagggt gcagaagaac 900 agagaggaat gtgaggagaa aatagataat ttcataaagt catatcagtc acaaacattc 960 ctcagaggaa caacagatca caaatctact gtacagattc caccatgggt gacactgcct 1020 ggtgaaaagg gaaaaggact ggggtgcctc cagtctctga atgtagaggg aaaccatcca 1080 atggcaaaga tttggcttaa ggtggttagg tcagcaatac ttgaggaaat agaaagaatg 1140 tatgatgatc cagaagcaga attagagtat gcgatgtctg gctcaacctc acgacctgat 1200 gagagaaaca agtatcacag gctcagattg gatctagacc atgatgagga gctatatgca 1260 gcatgcctag gagtaaatgg gaagtcgcat aggaatgatg gaatggtaaa tgatgcaaga 1320 gagaggagta agaaattgtt ctctatagag catgacacaa cacctttaga aactttcttg 1380 tcagagagaa gtagagacat cttctctgat gacaactact tgtacaatcc cttatctgct 1440 gacagagagc taagagttgc agccatgagc atacatcagc ccaggttgat atcaaatgaa 1500 gggtcgaatg aatttctaga aaaccacgat cattatttaa gaagtccaat tggatcctgg 1560 tcacaaatgg ttagtctaat aggggctgaa ctatcagcct ctgtgaagca gcatgtcaag 1620 ccaagatcgt tcatagtcaa gaggctgcta gactcaggga tattcctgct cataaagcca 1680 acatcctcta agagtcacat atttgtatcc tttgcaatgg acaaatcact atggcactca 1740 aaccttaaca tggaaacagt attcaaaggc tatatcaatg ctggtgacct gatggtcact 1800 gactttgtat ccttcaagct cagcaagttg acaaatctct gcaaaaccaa ttctctacta 1860 tacacagcaa tatgtttctg gacagaagtt tatgggttta caccttggaa ctccatgtct 1920 ctattgtgca atgaaagaag ctccgtggca caggagattt gttatatgac caaactgtca 1980 ttgctaacat tgctggagga caaggcaacc acagaagaac tacagacaat aacacgatat 2040 attgtgatgg aaggattcgt ctcccagcct gaattgccaa aaccacataa gatgattcaa 2100 aagctccctt atgctctgcg tagtgaactt caagtgctct tagtgagtaa gttgttcatg 2160 tcaatgagaa ggatagcagc acagccattc accctaagta agaagggagg acaaatatca 2220 tggagccatc tattcaaccc cttcacacaa agtgccataa gggagattca gccgatgatt 2280 aattgctgct ataatgggta ctttaaaaac aaagaagaag agacagaacc ctctgtccta 2340 tccaagatgt acaagaagat aatagagctt gagcacatgt gtcctgaaga tgacaaatat 2400 cttggagcag acgacccaga agaaccaaaa atgcatgagt ttagcagaag ctacctaatg 2460 gagtgcatac agcatggcaa acaacttctg gcaagaatgc acggacacaa cttcatggat 2520 ctaatagatg agcagattgt cagagaggtc tcacagttga ctattgagcg cttggccact 2580 ctgaaagcaa ccagcaactt taatgagaac tggtatgtct acaaagatgt gaaggataag 2640 aactacacaa gagataagct tttggtcaaa atgtccaatt atgcatctga gggtaactca 2700 attgcattac agaagttcga agactgcatg accaccatcg aaaaaagagg ctcaatgcat 2760 atctgcctct tcaaaaaaca acagcatggc ggtttaagag agatctatgt gatgggagca 2820 gaagaaagga tagtccaaag tctagttgag tccatcgcaa agagtatagg aagattcttc 2880 ccatctgata cattgtgcaa ccctgctaat aagacaaaga tccctgaaag ccatggagtg 2940 cgagccagga agcactgtga gggatctgtc tggacatgct caacatctga tgatgcaagg 3000 aagtggaatc aggggcactt tgtgactaaa ttcgcattga tgctcagaga attcacacat 3060 cccaagtggt ggcccattat tataaggggc tgttcaatgt tcactgagaa aaagatgatg 3120 atgaacctga actttatcag gatattggac tgtcacaagg agctcaagac aagtgatgag 3180 tttgcaaaca ccctgtttaa ggcatatcat ggtgagatag aggtcccatg ggcgaaacct 3240 ggaaggacat atttgacaac aaagacaggg atgatgcaag gaattctaca tttcacatca 3300 tcattgctgc acaccctgca tcaagagttc atcaggtccc tcacatttaa agtgttcaac 3360 agtaaggtac acccggaaat gtctcacaaa atggtgtgtg atatgatgca gggatcagat 3420 gacagtagta tgatgctgag ttttccctca agagatgaga gtacaatagc aaaatgtaag 3480 gttgctgctt ccctgtgttt taggttgaag aaaaaacttg ggatctacat aggaatttat 3540 ccatcagaga agtcaacatc aaacactgat tttgtgatgg agtacaactc tgagttctat 3600 ttccactcac aacacgttag gccgacaatt agatggatat ctgccagttg cagtctccca 3660 gaagttgaga cactagtagc cagacaggaa gaggcagcga acctcctcac agccatcact 3720 gaaggcggtg gttcattctc tctggcatcg tgcgtgcagc atgctcaatg cactctgcac 3780 tacatgctta ttggaatggg agtgtcagag ctgttctatg agtacaagaa ggcaattaat 3840 agatggaagg atccaggtat agggttcttc ctgatggata atccgtattc tgctggactt 3900 ggaggattca gatacaactt atacagggct ataacaggga caaaccttca gaagatttac 3960 gcatttttct tgaagaaggt aagaggagag aaggatgatg aagatttgga caaccttgag 4020 cctgactcat gcagtgttag tccaggagga gcattgattt tgagctcttc tctcaaatgg 4080 ggttcaaggc agaaattcta caggctcaga gacaggctca acattccttc tgattggctt 4140 gaaaagataa atgagaatcc agctgtgctg tatagagcac cgcagaatgg agaagagata 4200 cagttgagaa tagcagagaa agtgcatagc ccgggagttg tatcctctct ctcatcagga 4260 aacgcggttg caaaagttat ggcctcttca gtatatttcc tttccgctgc tatattccag 4320 gatgcgggga agcctgagtt tagattcctt gagccatcta agtacagctt actgcacaag 4380 ctagctatgt atgagagctt ctatggccat gatgacctta gcgatgatga gatgctattc 4440 ttattcccaa atattgaaga gctcagacaa ttagatttaa ttgtattcaa taagggaaag 4500 atagagtttg ttccaagatc tagtcagaga gaggcaacac aaaccagagt ggtcatattt 4560 gatcaacaca atacacttaa agtggaggct gagaagatgg tatcggacaa gtggtttggg 4620 acacagaaga gcagaattgg gtctactggt ttcaatcagg agtggactaa gctgaagact 4680 attgtaaatt ggctaacaga cacaccaaag gacacactga gcagctcacc ttttactaat 4740 catgtccaga tacgaaattt ctttgccaga atggaatcca aaccaagagc agtgaagatt 4800 actggtgcac ctgtcaagaa gaggtctgga atcagcaaga tatctcttgt cataagggac 4860 aatttcgcaa gatgtggttt tttgaaaggc attgaggact ctgaagcaat tgataggtca 4920 aactcatctg agataatgaa gcacttcatg tttaccatac ttcatggacc ttatactgag 4980 gagaccaaga aaacttatgt tgaaaaagtc atgcgtgacc taccagatat aggaattaga 5040 gagtcagata gaaagacgaa gtcaaatctg ctagggattg tgcagaattg ggtgaacaat 5100 cctgatggaa cagcacagtt aatagaagag gttggtgcag gtataattgg aggttttgtt 5160 gctcctcaaa agagtgcatt attgaatgga aaagtcatat actatggaca tggctcatgg 5220 cgtgggttta tggatggaaa ccaagttcag attgatatat acaatgacaa aggatttcct 5280 ccccatattg agtctgtgac aatctgtgag aaaacatcaa tatgggacat atgtgggtca 5340 atcagatcct gggcagatga tataggaata gtcaataatg ttgactgctc tcgcaaagca 5400 tcaagatcaa gactaaggta ttggctattt gaattcagag cttgtggaat cgataaaccc 5460 tttggatccc ctgtatacgt tgtgagaaac aacatgataa ggatagaccc aatcaaggaa 5520 tccaacataa ggctaaaggt gagaaagagc actttgaatc tttatgtcaa acagaatgat 5580 agggatgtgc atattctttc gtacactgca ggtgataatg acctgaaccc agtagctgtt 5640 actcggagtt ctgatccagg agtactctca gcaatttcct tattctcaaa agaaccaagc 5700 tcaagctggc ttaggtgtga ttcactgccc actgcataca tggggatgat tttagattta 5760 gcagagggtg tgagagtgag ggaacacatt gatagcccaa ggctgatgca gataatcaag 5820 acgtgcacag agtcatccct tagatctaag gtaggcagtg ttttccagat tgtaccggga 5880 tcacatgatg caccacaagt atttgacata gactcaatga ttgacataat gattgaagat 5940 atgaacattg agagcttcac tagcatcacg aaggatatag ctgaaaatct agaagaagca 6000 tacacaactg aattatttga tttcactgac atcgacctgt ttggtccagc tcatcacaag 6060 gaaatatctg atctggcaat ggtatcccat ccactgatgg atgagttcgt tgaggcactg 6120 ataaatagag caacaaggaa ggacataagg aaggtgcttg agcaaggtgt gtgtctgaag 6180 aagaacgaga tgcacttcaa gcagctcttc aggtgtatag gtcgagaccc atcatcaatt 6240 aagatcgaaa ctggaattct tgacattgag gatgaaacag acttcgatgt cataggatga 6300 tcaaatcatg gacagagtga taatacatgg aaacagggac gcaacgtccc tctcatggcg 6360 atgaagtgtg atattcaatt attttaatcc atgagatttg ggcggtcttt gtgt 6414 //