ID HM468428; SV 1; circular; genomic DNA; STD; VRL; 2790 BP. XX AC HM468428; XX DT 02-JAN-2012 (Rel. 111, Created) DT 29-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE African cassava mosaic virus strain Pakistan/Multan/Tomentosum/08, complete DE genome. XX KW . XX OS African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2790 RX PUBMED; 22899988. RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT "A melting pot of old world begomoviruses and their satellites infecting a RT collection of gossypium species in pakistan"; RL PLoS One 7(8):E40050-E40050(2012). XX RN [2] RP 1-2790 RA Nawaz-ul-Rehman M.S., Fauquet C.M.; RT ; RL Submitted (08-JUN-2010) to the INSDC. RL ILTAB, Danforth Plant Science Center, 975 N Warson Rd., St. Louis, MO RL 63132, USA XX DR MD5; b728992136047404e11abe49002e0efe. XX FH Key Location/Qualifiers FH FT source 1..2790 FT /organism="African cassava mosaic virus" FT /host="Gossypium tomentosum" FT /strain="Pakistan/Multan/Tomentosum/08" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /collected_by="M S Nawaz-ul-Rehman" FT /collection_date="Apr-2008" FT /db_xref="taxon:10817" FT gene 136..477 FT /gene="AV2" FT CDS 136..477 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:G9B5D8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G9B5D8" FT /protein_id="AEI17656.1" FT /translation="MWDPLVNESPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV FT QKAHDVQDV" FT gene 296..1075 FT /gene="AV1" FT CDS 296..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G9B5D9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G9B5D9" FT /protein_id="AEI17657.1" FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW FT MNRPMYRKPMMYRMYRSPDIPRGCERPMSRSSRLSRGMMLSTLVSVSDYVMCTRGPRLT FT RRVGKRFCIKSVYILGKIWMDENIKKQNHTNNVMFYLLRERRPYGNTPQDFGQIFNMTD FT NEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKY FT ENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" FT gene complement(1072..1476) FT /gene="REn" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer protein" FT /db_xref="GOA:F6J0Y2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6J0Y2" FT /protein_id="AEI17658.1" FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI FT ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH FT VIRAADHVLFNVIEKTIACQLTHEIKFNIY" FT gene complement(1217..1624) FT /gene="TrAP" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:G9B5E1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G9B5E1" FT /protein_id="AEI17659.1" FT /translation="MQSSSPPQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ FT PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" FT gene complement(1533..2615) FT /gene="AC1" FT CDS complement(1533..2615) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:G9B5E2" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR002488" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G9B5E2" FT /protein_id="AEI17660.1" FT /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLDSLSHLTLSSL FT KSVESCIRMGNLTCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSHT FT WIRTATPSNGDNFRSMDDLLEAVNSPQMMLTPKRLTAAVSQKLLMSLGNYSQRTLYFSF FT IISNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVIEG FT DSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDGVDPHYLKHFKEFMGSQRD FT WQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITPTEP FT LYSGSNQSQSQTIQEASHPA" XX SQ Sequence 2790 BP; 747 A; 563 C; 688 G; 792 T; 0 other; accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg tcggccaatc 60 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt 120 cgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ctcctgactc ggtgcatggg 180 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 240 actctgggcc acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc 300 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa 360 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 420 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 480 cccagacata cccaggggct gtgaaaggcc catgtcaagg tccagtcgtt tgagcagagg 540 gatgatgtta agcaccttgg tatctgtaag tgattacgtg atgtgcacac gtgggcctag 600 gctgacacgc agggtcggaa agaggttttg tatcaagtcc gtttacattc ttggtaagat 660 ctggatggat gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct 720 tagggaaaga aggccttatg gcaatacgcc ccaagacttt gggcagatat ttaacatgac 780 tgataatgag cccagtactg caacaattaa gaacgatttg agggataggt ttcaggtgtt 840 gaggaaattt catgccactg ttattggtgg tccatctggc atgaaggagc aggctttggt 900 gaaaaggttt tacaggttga atcatcacgt gacatataat catcaggagg cagggaagta 960 tgagaatcac acagagaatg cgttgctttt gtacatggca tgtactcatg cctccaatcc 1020 tgtatatgct acgttgaaaa tacgtatata tttctatgac agtattggca attaataaat 1080 attgaatttt atttcatgag tcaactgaca cgcaatagtt ttttcaatta cattgaacaa 1140 aacatgatca gcagctctaa ttacatggtt aattgagata acacctatat tatccaagta 1200 tttaagtact tggtatctaa agacccttaa gaaaagacca gtctgaggct gtaaggtcgt 1260 ccagatcctg aagttgagaa aacatttgtg aatccccagc tccttccgca ggttgtgatt 1320 gaatcgaacc tggactgtta tgatgtcctg gttcagcagg aatggtcgtt gttggtgcct 1380 ggttattgtg aaatacaggg gattgtttat ttcccaggta tacacgccat tcattgcttg 1440 aggagcagtg atgagttccc ctgtgcgtaa atccatgatt ggagcagttg atatggaggt 1500 aatatgaaca gccacagaca agatccactc tcctacgccg gatggctcgc ttcttgaatt 1560 gtctgtgact gactttgatt ggaacctgag tagagtggtt ctgtgggggt gatgaagatt 1620 gcattcttta atgcccaggc ctttagcgct tcttgctttt cctcgtctag gaactcttta 1680 taggacgagg ttggtcctgg attgcagagg aagatagtgg gaatgccacc tttaatttga 1740 acgggtttcc cgtattttgt gttggactgc cagtcccgct gggaccccat gaattcctta 1800 aagtgcttta ggtagtgtgg atcgacgcca tcaatgacgt tgtaccaagc agcattattg 1860 aagacctttg gactaaggtc caggtgtcca cacaggtaat tgtgtgggcc taaagatctg 1920 gcccatatcg tcttccctgt tctgctatca ccttctatga caatactatt gggtctccat 1980 ggccgcgcag cggaagccct aacattatca gcgacccatt cttcaagttc atcaggaact 2040 tggtcaaagg aagaacatgg gaagggagaa atataaggag ctggtggctc ctggaaaatc 2100 ctttctaaat tactatttga gattatgaaa ctgaagtaca aagtcctttg ggagtaattc 2160 cctaatgaca ttaagagctt ctgacttact gccgctgtta agcgctttgg cgtaagcatc 2220 atttgcggac tgttgaccgc ctctagcaga tcgtccatcg atctgaaatt gtccccattc 2280 gacggtgtcg ccgtccttat ccaggtatga cttgacatct gagcttgatt tggcaccttg 2340 aatgttgggg tggaaactgg tgctacagct tgggtgtaga caatcgaaga gacgattgtt 2400 cgtaatcgtg attttgccct cgaattggat gagggcatgc aagtgaggtt ccccattctg 2460 atgcagctct ctacagattt taatgaactt agggttagat gggagagaga gtctagagtt 2520 tgaatgaatg acagcaggtg ttctttgggg atagaacact ttgggtatgt gagaaagaca 2580 ttcttggctt gaactctaaa acgaggagtc ctcattttga ccaagtcaat tggagacact 2640 caactagaga cactcttgag catctcctcc tgttaattgg agacattata taggtgtctc 2700 taaatggcat tcttgtaata agttaaactt taatttgaat gaaaagcctc aaaaggcgca 2760 taacacccaa ggggccaacc gtataatatt 2790 //