ID   HM346944; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   HM346944;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Shirazi7-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1678
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1678
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the INSDC.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
DR   MD5; 45f04d81a420a0638f464794e3d8f630.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1678
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Shirazi7-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Shirazi"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1..1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E9KZD2"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:E9KZD2"
FT                   /protein_id="ADW23656.1"
FT                   /translation="GPYIKWFLKELGLDGVVKMLSAFGDKSAYALCTFAYVHNELSDPI
FT                   VFKGVVNGEIVPPRGSNGFGWDPIFKPDGCSCTFAEMPSSIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQRLKDEGLQTKKRPCGEPDDGEVVDDDSDGGNNQRSGKEVVDESQNDQQV
FT                   DPRKPKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VVQNFLAYIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDGNVDKERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376..1476
FT                   /product="coat protein"
XX
SQ   Sequence 1678 BP; 543 A; 255 C; 416 G; 464 T; 0 other;
     gggccataca tcaagtggtt tttaaaagaa ttgggtcttg atggtgttgt caaaatgctg        60
     tcagcatttg gagataaatc agcgtacgca ttatgcacat tcgcatatgt gcacaatgag       120
     ttatctgatc caattgtgtt caaaggagtt gtgaatggtg aaattgtgcc accacgaggt       180
     agtaatggtt ttggctggga tcctatcttt aagcctgatg gatgtagttg tacgttcgca       240
     gaaatgccaa gcagcattaa gaatgatttt tctcacagaa gaagagcttt agagaaagtc       300
     aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaagcaag agtggctcta       360
     acgattgatg ttcaggcctt aaatcaggag gaaatagaag cagagattac tgctttaaag       420
     aagctgtgga aagataatgg gccgacaaga acgcgtagtc catttgaggc taggagattg       480
     agagccccac aagttgagcg tgtaaatgag ttgcttcaga gactgaaaga tgaaggactg       540
     caaacaaaga agaggccatg tggagaacca gatgatgggg aagtggtaga tgatgacagc       600
     gatggtggta acaatcagag atctggaaag gaagttgttg atgagagcca gaatgatcag       660
     caagttgatc caagaaagcc aaaattcaaa attaggggag atggaagtgc tattagacgg       720
     gatgacattg acaaaattcc aactaatgct cttgagatca agaagacgtt taagcctcca       780
     aaggtatcac agtcagctta catttggatt ccacgctctc aaagggataa tctaacccct       840
     gatgttgttc agaatttcct ggcatatata cctccatctc atgctataga taaccaactt       900
     gcttcaggaa ttgaagttga aaattgggca attgaggttg ctaaagcata tggagttaat       960
     atacaggaat tttatcgcac aattttgcca gcttggatag tgaactgtat agtgaacggc      1020
     actagcgatg aaaggaaaaa cgagaagtca tggcgagcag tcgagttgaa ttctcagggg      1080
     gaggatgttg atgattttga gtatccaatg gagccaatgt acaaatttgc attgccaact      1140
     atgaggaagg ttatgagaaa cttttctagc caagctatcc tcatgtatca gaatagtgtc      1200
     gctgcaggaa aggcgtttgt gataaaagct gctagaaatg ctggatacac aagtattgaa      1260
     aacaaatggc taggtataga ttttctcgcc gaagctcaat tgtctcaaag tcaacttgat      1320
     atcaagcatc agattctggc agcaaatgtt ggtaggacaa agacaaggct gtttgcatta      1380
     gcagctcctg gggatgatgg caatgtagat aaagaaaggc acacgacaca cgatgtcagt      1440
     gcaaataggc acagttatag tggtgccgca attgaataaa taaaatatta gtgtttctaa      1500
     ttaggtttaa gtgagattac agcttagttg gaaagctaag ctatatttca aatttgaatt      1560
     taattactta aatatcgtat tttattttca agtttggtgg agttttggat agccaattat      1620
     attttggttg ggtaagccaa aatgtatttt ggagatcttt ctccatatcc ttctgtta        1678
//